Wall clock time and date at job start Mon Mar 30 2020 18:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48501 * 109.47065 * 239.99898 * 3 2 1 5 5 H 1.48491 * 109.47465 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46898 * 120.00258 * 3 2 1 7 7 C 1.37879 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99485 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46496 * 180.02562 * 9 7 2 11 11 C 1.46954 * 110.99752 * 169.99951 * 10 9 7 12 12 C 1.53056 * 109.36505 * 183.18536 * 11 10 9 13 13 N 1.46951 * 109.36472 * 301.60098 * 12 11 10 14 14 C 1.46902 * 110.99682 * 183.18701 * 13 12 11 15 15 C 1.50703 * 109.46870 * 169.99895 * 14 13 12 16 16 C 1.39875 * 126.04085 * 90.02443 * 15 14 13 17 17 N 1.30829 * 108.20298 * 179.73658 * 16 15 14 18 18 N 1.40087 * 108.20855 * 359.97438 * 17 16 15 19 19 H 0.96996 * 126.03795 * 179.97438 * 18 17 16 20 20 C 1.34946 * 107.92254 * 0.02562 * 18 17 16 21 21 C 1.46954 * 110.88177 * 59.31883 * 13 12 11 22 22 C 1.46958 * 110.99952 * 293.79571 * 10 9 7 23 23 H 0.96999 * 119.99827 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47205 * 60.00588 * 9 7 2 25 25 H 1.08995 * 109.47090 * 299.99344 * 9 7 2 26 26 H 1.08999 * 109.48942 * 63.21884 * 11 10 9 27 27 H 1.09005 * 109.49208 * 303.15163 * 11 10 9 28 28 H 1.08996 * 109.48968 * 181.62704 * 12 11 10 29 29 H 1.09004 * 109.48287 * 61.56815 * 12 11 10 30 30 H 1.08997 * 109.47529 * 50.00084 * 14 13 12 31 31 H 1.08999 * 109.47098 * 289.99307 * 14 13 12 32 32 H 1.08004 * 125.89555 * 359.71602 * 16 15 14 33 33 H 1.07999 * 126.12479 * 180.02562 * 20 18 17 34 34 H 1.08999 * 109.48942 * 60.64750 * 21 13 12 35 35 H 1.09006 * 109.48943 * 180.70989 * 21 13 12 36 36 H 1.08996 * 109.49179 * 296.78098 * 22 10 9 37 37 H 1.09000 * 109.48705 * 56.84828 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5208 -4.8940 0.2377 12 6 2.5562 -6.0188 0.3093 13 7 3.3192 -6.0593 -0.9460 14 6 4.2738 -7.1759 -0.9459 15 6 4.8578 -7.3375 -2.3258 16 6 6.0118 -6.7124 -2.8094 17 7 6.2017 -7.1032 -4.0434 18 7 5.1732 -7.9910 -4.3846 19 1 5.0633 -8.4355 -5.2397 20 6 4.3618 -8.1178 -3.3138 21 6 4.0040 -4.7811 -1.1842 22 6 2.9685 -3.6563 -1.2559 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 0.8251 -5.0914 -0.5779 27 1 0.9732 -4.8434 1.1789 28 1 2.0483 -6.9718 0.4571 29 1 3.2354 -5.8353 1.1420 30 1 3.7598 -8.0934 -0.6592 31 1 5.0737 -6.9701 -0.2347 32 1 6.6379 -6.0256 -2.2591 33 1 3.4758 -8.7326 -3.2556 34 1 4.6996 -4.5836 -0.3686 35 1 4.5516 -4.8318 -2.1254 36 1 2.2894 -3.8397 -2.0885 37 1 3.4764 -2.7033 -1.4036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595391687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:52 Heat of formation + Delta-G solvation = 63.662148 kcal Electronic energy + Delta-G solvation = -18244.476538 eV Core-core repulsion = 15443.393967 eV Total energy + Delta-G solvation = -2801.082571 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.05685 -39.96864 -36.70931 -34.61919 -32.56621 -31.83457 -31.67913 -29.58782 -27.23817 -24.98676 -24.44526 -23.19389 -22.72316 -20.88979 -20.49441 -18.60432 -18.46770 -17.22367 -16.43521 -15.95739 -15.78505 -15.51241 -15.38064 -15.28045 -15.05475 -14.68407 -14.07421 -13.85853 -13.54039 -13.33163 -12.98555 -12.71266 -12.67012 -12.40125 -12.20988 -12.05849 -11.94283 -11.55525 -11.31675 -11.16163 -10.60849 -10.52405 -9.49280 -9.15464 -8.97427 -8.20000 -6.30448 1.05887 1.41264 1.44749 1.52620 1.81788 2.14744 2.40895 3.12027 3.23013 3.34539 3.87565 4.08912 4.14006 4.27679 4.33712 4.42163 4.45538 4.58559 4.71481 4.74381 4.83180 4.91299 4.94627 5.02169 5.07931 5.10247 5.24181 5.29295 5.32578 5.64579 5.71600 6.04345 6.17794 6.21822 6.40389 6.51829 6.66169 6.77737 6.85319 7.39303 8.91137 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.031662 B = 0.004686 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.117496 B = 5974.122858 C = 6504.341592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.543 5.543 11 C 0.053 3.947 12 C 0.071 3.929 13 N -0.543 5.543 14 C 0.137 3.863 15 C -0.247 4.247 16 C 0.047 3.953 17 N -0.335 5.335 18 N -0.475 5.475 19 H 0.450 0.550 20 C 0.087 3.913 21 C 0.076 3.924 22 C 0.071 3.929 23 H 0.265 0.735 24 H -0.043 1.043 25 H 0.005 0.995 26 H 0.019 0.981 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.039 0.961 30 H 0.100 0.900 31 H 0.043 0.957 32 H 0.186 0.814 33 H 0.208 0.792 34 H 0.037 0.963 35 H 0.081 0.919 36 H 0.008 0.992 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.896 -18.561 -4.386 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.268 5.268 11 C -0.076 4.076 12 C -0.057 4.057 13 N -0.269 5.269 14 C 0.009 3.991 15 C -0.259 4.259 16 C -0.139 4.139 17 N -0.158 5.158 18 N -0.184 5.184 19 H 0.296 0.704 20 C -0.062 4.062 21 C -0.052 4.052 22 C -0.058 4.058 23 H 0.073 0.927 24 H -0.025 1.025 25 H 0.023 0.977 26 H 0.037 0.963 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.203 0.797 33 H 0.225 0.775 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.027 0.973 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.496 -18.359 -5.400 21.363 hybrid contribution -0.711 1.016 0.209 1.258 sum 8.785 -17.343 -5.191 20.122 Atomic orbital electron populations 1.70084 1.07774 1.27982 1.51731 1.25924 0.95743 1.03217 0.94719 0.85430 0.78169 0.77849 0.79142 1.19319 1.20739 1.19178 1.21428 0.93561 0.91098 1.50190 0.91976 1.19352 0.90123 0.89126 0.93222 1.62227 1.27217 1.03203 1.34191 1.22198 0.95915 0.89629 0.99861 1.22084 0.95249 0.98152 0.90194 1.62194 1.26842 1.03343 1.34498 1.20295 0.93292 0.94024 0.91449 1.20094 0.99825 1.06774 0.99207 1.24081 0.97818 0.99622 0.92368 1.77256 1.11576 1.10564 1.16447 1.46339 1.20393 1.37094 1.14580 0.70380 1.22879 0.96705 0.99960 0.86679 1.21985 0.94417 0.88047 1.00742 1.21947 0.95710 0.98459 0.89662 0.92660 1.02519 0.97691 0.96292 0.91060 0.87752 0.94268 0.88154 0.93861 0.79668 0.77533 0.94500 0.90056 0.97323 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.52 -30.58 8.47 25.60 0.22 -30.36 16 8 H 0.06 3.54 7.13 -2.91 -0.02 3.52 16 9 C 0.21 11.56 4.72 85.56 0.40 11.97 16 10 N -0.54 -24.53 4.70 -900.26 -4.23 -28.77 16 11 C 0.05 1.93 5.61 86.31 0.48 2.41 16 12 C 0.07 1.94 5.61 86.31 0.48 2.42 16 13 N -0.54 -14.60 4.70 -900.27 -4.23 -18.83 16 14 C 0.14 2.71 5.45 85.56 0.47 3.17 16 15 C -0.25 -4.99 4.96 -20.14 -0.10 -5.09 16 16 C 0.05 1.07 10.55 85.24 0.90 1.97 16 17 N -0.34 -8.05 12.70 -57.02 -0.72 -8.78 16 18 N -0.47 -8.20 7.36 -57.59 -0.42 -8.62 16 19 H 0.45 4.77 8.96 -213.33 -1.91 2.86 16 20 C 0.09 1.40 11.90 83.54 0.99 2.40 16 21 C 0.08 2.41 5.38 86.31 0.46 2.88 16 22 C 0.07 2.93 5.43 86.31 0.47 3.40 16 23 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 24 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 25 H 0.00 0.30 8.02 -2.39 -0.02 0.28 16 26 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 2.57 8.07 -2.38 -0.02 2.55 16 28 H 0.10 2.17 8.07 -2.39 -0.02 2.15 16 29 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.10 1.52 8.03 -2.39 -0.02 1.50 16 31 H 0.04 0.85 8.12 -2.39 -0.02 0.83 16 32 H 0.19 3.64 8.06 -2.91 -0.02 3.62 16 33 H 0.21 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 2.42 6.15 -2.38 -0.01 2.40 16 36 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.06 2.81 6.79 -2.39 -0.02 2.80 16 Total: -1.00 -71.54 301.59 -2.91 -74.45 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -0.85 Total: 4.92 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 5.24 Total: -4.26 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -9.33 Total: -122.15 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -71.54 -2.91 -74.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595391687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.108 kcal (2) G-P(sol) polarization free energy of solvation -71.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds