Wall clock time and date at job start Mon Mar 30 2020 18:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30831 * 125.96281 * 2 1 4 4 C 1.33244 * 109.82798 * 180.11988 * 3 2 1 5 5 C 1.50700 * 125.52317 * 179.85198 * 4 3 2 6 6 H 1.08997 * 110.29016 * 0.38428 * 5 4 3 7 7 C 1.54257 * 110.32263 * 238.25953 * 5 4 3 8 8 C 1.54379 * 105.06256 * 241.00435 * 7 5 4 9 9 N 1.48562 * 104.69842 * 336.08765 * 8 7 5 10 10 C 1.46894 * 111.00344 * 159.09785 * 9 8 7 11 11 C 1.53003 * 109.47052 * 69.87193 * 10 9 8 12 12 C 1.50701 * 109.47171 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00110 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99601 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00347 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99532 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46983 * 60.00099 * 16 14 12 18 18 H 1.48494 * 109.46790 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47163 * 300.00036 * 16 14 12 20 20 C 1.48856 * 104.07618 * 39.46842 * 9 8 7 21 21 N 1.30713 * 108.94499 * 359.58293 * 4 3 2 22 22 N 1.34433 * 125.95968 * 179.65467 * 2 1 3 23 23 H 0.96993 * 126.82369 * 0.08273 * 22 2 1 24 24 H 1.08998 * 109.47608 * 270.31547 * 1 2 3 25 25 H 1.09003 * 109.46931 * 30.31305 * 1 2 3 26 26 H 1.08998 * 109.47168 * 150.31154 * 1 2 3 27 27 H 1.08998 * 110.32238 * 122.10808 * 7 5 4 28 28 H 1.09002 * 110.32308 * 359.90354 * 7 5 4 29 29 H 1.09002 * 110.41258 * 94.92615 * 8 7 5 30 30 H 1.09002 * 110.41328 * 217.24846 * 8 7 5 31 31 H 1.09001 * 109.47519 * 189.87201 * 10 9 8 32 32 H 1.09003 * 109.46928 * 309.87844 * 10 9 8 33 33 H 1.08998 * 109.47110 * 300.00865 * 11 10 9 34 34 H 1.09003 * 109.46723 * 60.00525 * 11 10 9 35 35 H 0.97002 * 120.00097 * 179.97438 * 15 14 12 36 36 H 1.09003 * 110.39541 * 201.75499 * 20 9 8 37 37 H 1.09004 * 110.49212 * 79.38626 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6887 -0.0026 5 6 4.7372 1.6235 -0.0066 6 1 4.3995 2.6598 -0.0003 7 6 5.6265 1.3575 -1.2387 8 6 6.9975 0.9436 -0.6620 9 7 7.0299 1.5402 0.6982 10 6 8.0102 0.8544 1.5506 11 6 9.4243 1.1820 1.0668 12 6 10.4300 0.4790 1.9416 13 1 10.0942 -0.1398 2.7606 14 6 11.7789 0.6260 1.6965 15 7 12.1877 1.3800 0.6996 16 14 13.0255 -0.2460 2.7805 17 1 12.8052 -1.7127 2.7070 18 1 14.3979 0.0731 2.3117 19 1 12.8644 0.2091 4.1849 20 6 5.6457 1.3481 1.2108 21 7 3.6194 -0.6169 0.0047 22 7 2.2964 -1.0881 0.0066 23 1 2.0093 -2.0146 0.0110 24 1 -0.3634 0.0057 1.0276 25 1 -0.3633 0.8872 -0.5187 26 1 -0.3633 -0.8927 -0.5090 27 1 5.7253 2.2632 -1.8369 28 1 5.2090 0.5496 -1.8396 29 1 7.0729 -0.1422 -0.6028 30 1 7.8046 1.3472 -1.2734 31 1 7.8923 1.1888 2.5814 32 1 7.8482 -0.2221 1.4970 33 1 9.5421 0.8478 0.0360 34 1 9.5863 2.2586 1.1204 35 1 13.1367 1.4837 0.5274 36 1 5.4349 2.0579 2.0108 37 1 5.5080 0.3262 1.5644 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595549566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:24:04 Heat of formation + Delta-G solvation = 77.601495 kcal Electronic energy + Delta-G solvation = -17821.689746 eV Core-core repulsion = 15021.211630 eV Total energy + Delta-G solvation = -2800.478116 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.31687 -38.52193 -34.24029 -32.97692 -32.53809 -31.52942 -28.83291 -28.70979 -27.75512 -24.51670 -22.67995 -21.58817 -21.12527 -20.00170 -19.21831 -18.10012 -16.36973 -15.88966 -15.46450 -15.14069 -14.44414 -14.34473 -13.87576 -13.51976 -13.35786 -13.18684 -12.58501 -12.40880 -12.03695 -11.90425 -11.63460 -11.46350 -10.99547 -10.89698 -10.77803 -10.54326 -10.49198 -10.14793 -10.11104 -9.76716 -9.54677 -9.29211 -9.08433 -8.28402 -7.82754 -5.94287 -3.96546 1.42600 2.45583 2.72624 3.36974 3.40977 3.43582 3.72344 4.34819 4.47244 4.52765 4.83707 4.90619 4.97172 5.02573 5.18657 5.36260 5.39945 5.41461 5.66249 5.80657 6.01849 6.07529 6.10392 6.17628 6.23093 6.31902 6.40608 6.53713 6.56239 6.86019 7.01971 7.43142 7.53364 7.81135 7.95455 7.97476 8.14001 8.49296 9.10548 9.66620 11.17113 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.051907 B = 0.003724 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.301775 B = 7517.737912 C = 7752.994766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.276 3.724 3 N -0.538 5.538 4 C 0.244 3.756 5 C -0.002 4.002 6 H 0.106 0.894 7 C -0.111 4.111 8 C 0.038 3.962 9 N -0.507 5.507 10 C 0.053 3.947 11 C 0.030 3.970 12 C -0.522 4.522 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.042 3.958 21 N -0.307 5.307 22 N -0.487 5.487 23 H 0.438 0.562 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.023 0.977 33 H 0.016 0.984 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.081 0.919 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.631 -3.354 -3.140 24.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.003 4.003 3 N -0.267 5.267 4 C -0.038 4.038 5 C -0.024 4.024 6 H 0.124 0.876 7 C -0.150 4.150 8 C -0.090 4.090 9 N -0.230 5.230 10 C -0.074 4.074 11 C -0.007 4.007 12 C -0.561 4.561 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.088 4.088 21 N -0.135 5.135 22 N -0.205 5.205 23 H 0.283 0.717 24 H 0.109 0.891 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.721 -2.747 -3.217 23.111 hybrid contribution 0.141 -2.122 0.659 2.226 sum -22.580 -4.869 -2.558 23.240 Atomic orbital electron populations 1.20372 0.83761 1.04880 1.04507 1.24409 0.96589 0.83053 0.96202 1.70383 1.01511 1.29469 1.25360 1.24236 0.92910 0.90064 0.96613 1.20338 0.88244 0.96597 0.97202 0.87588 1.22370 0.94812 1.01811 0.95976 1.23057 0.96516 0.97707 0.91719 1.65600 1.02474 1.52594 1.02378 1.22496 0.94365 0.94573 0.96010 1.19038 0.87687 0.97625 0.96359 1.21175 0.91185 1.29279 1.14477 0.92893 1.24988 0.98511 0.95419 0.95373 1.69962 1.15136 1.38764 1.29392 0.86664 0.80409 0.80035 0.80907 1.20339 1.21283 1.20244 1.23162 0.89555 1.00290 0.95746 1.78088 0.96033 1.12573 1.26811 1.48035 1.04528 1.09938 1.57986 0.71652 0.89057 0.88375 0.89994 0.90339 0.91612 0.93873 0.89541 0.92061 0.95905 0.96547 0.95657 0.92971 0.90104 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.28 2.76 8.24 -155.69 -1.28 1.47 16 3 N -0.54 -7.31 11.19 -8.16 -0.09 -7.40 16 4 C 0.24 3.61 6.45 -156.85 -1.01 2.60 16 5 C 0.00 -0.03 3.59 -90.39 -0.32 -0.36 16 6 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 7 C -0.11 -1.62 6.64 -25.35 -0.17 -1.79 16 8 C 0.04 0.68 5.73 -2.18 -0.01 0.67 16 9 N -0.51 -9.84 5.38 -229.70 -1.24 -11.07 16 10 C 0.05 1.18 4.76 -3.83 -0.02 1.16 16 11 C 0.03 0.82 5.03 -27.88 -0.14 0.68 16 12 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 16 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.04 0.69 6.04 -2.01 -0.01 0.68 16 21 N -0.31 -4.48 12.53 32.42 0.41 -4.07 16 22 N -0.49 -4.99 7.45 32.62 0.24 -4.74 16 23 H 0.44 2.78 8.96 -182.35 -1.63 1.14 16 24 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 29 H 0.04 0.81 7.82 -51.93 -0.41 0.40 16 30 H 0.09 1.61 7.76 -51.93 -0.40 1.21 16 31 H 0.06 1.35 8.13 -51.93 -0.42 0.93 16 32 H 0.02 0.51 7.88 -51.93 -0.41 0.10 16 33 H 0.02 0.46 7.25 -51.93 -0.38 0.08 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.04 0.79 7.53 -51.93 -0.39 0.40 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -34.50 308.30 -10.26 -44.76 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -6.94 Total: -3.74 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -3.00 Total: -8.78 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.06 Total: -53.97 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.50 -10.26 -44.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595549566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.360 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds