Wall clock time and date at job start Mon Mar 30 2020 18:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47130 * 2 1 4 4 H 1.09000 * 109.46777 * 305.94355 * 3 2 1 5 5 C 1.50699 * 109.46852 * 185.94685 * 3 2 1 6 6 H 1.07999 * 119.99830 * 245.07861 * 5 3 2 7 7 C 1.37879 * 120.00024 * 65.08635 * 5 3 2 8 8 N 1.31516 * 119.99643 * 192.38992 * 7 5 3 9 9 Si 1.86795 * 120.00065 * 12.38435 * 7 5 3 10 10 H 1.48501 * 109.47112 * 91.27626 * 9 7 5 11 11 H 1.48499 * 109.47006 * 211.27599 * 9 7 5 12 12 H 1.48505 * 109.47342 * 331.27745 * 9 7 5 13 13 N 1.46901 * 109.47124 * 65.94758 * 3 2 1 14 14 C 1.46904 * 110.99731 * 258.81370 * 13 3 2 15 15 C 1.52995 * 109.47058 * 185.16522 * 14 13 3 16 16 H 1.09004 * 115.55045 * 29.33080 * 15 14 13 17 17 C 1.53003 * 117.50227 * 175.00142 * 15 14 13 18 18 C 1.52994 * 60.00256 * 107.49169 * 17 15 14 19 19 Cl 1.80298 * 117.49991 * 252.51535 * 18 17 15 20 20 Cl 1.80301 * 117.49937 * 107.48962 * 18 17 15 21 21 H 1.09001 * 109.47231 * 186.22624 * 1 2 3 22 22 H 1.09003 * 109.47360 * 306.23079 * 1 2 3 23 23 H 1.09001 * 109.46968 * 66.22742 * 1 2 3 24 24 H 1.08998 * 109.47160 * 239.99844 * 2 1 3 25 25 H 1.09004 * 109.47180 * 119.99715 * 2 1 3 26 26 H 0.97003 * 119.99578 * 179.97438 * 8 7 5 27 27 H 1.00900 * 111.00015 * 134.86023 * 13 3 2 28 28 H 1.08994 * 109.47200 * 305.16889 * 14 13 3 29 29 H 1.09000 * 109.47118 * 65.16921 * 14 13 3 30 30 H 1.09001 * 117.49833 * 214.98840 * 17 15 14 31 31 H 1.08997 * 117.49395 * 359.97243 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5924 1.9861 -0.8320 5 6 3.5398 1.4450 -0.1472 6 1 4.1607 1.8105 0.6573 7 6 4.1192 0.9808 -1.3090 8 7 5.4137 0.7528 -1.3526 9 14 3.0656 0.6758 -2.8210 10 1 3.0298 1.9038 -3.6553 11 1 3.6436 -0.4418 -3.6098 12 1 1.6859 0.3230 -2.4001 13 7 1.6710 2.0924 1.2647 14 6 0.4982 2.9592 1.0886 15 6 0.2228 3.7153 2.3899 16 1 1.0963 3.9188 3.0092 17 6 -0.8929 4.7623 2.3761 18 6 -1.1003 3.4330 3.1046 19 17 -2.2155 2.2346 2.3489 20 17 -1.0953 3.4619 4.9074 21 1 -0.3634 -1.0216 0.1115 22 1 -0.3634 0.6074 0.8290 23 1 -0.3633 0.4143 -0.9405 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.8213 0.4258 -2.1699 27 1 2.4490 2.6096 1.6459 28 1 0.6908 3.6728 0.2875 29 1 -0.3686 2.3501 0.8319 30 1 -0.7533 5.6544 2.9867 31 1 -1.4303 4.9127 1.4399 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846993186.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:46 Heat of formation + Delta-G solvation = 10.336550 kcal Electronic energy + Delta-G solvation = -14683.022202 eV Core-core repulsion = 12052.059067 eV Total energy + Delta-G solvation = -2630.963135 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 251.054 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.39578 -36.43309 -36.00764 -35.25687 -32.30879 -31.19139 -27.89829 -24.66760 -22.39198 -22.35710 -20.76067 -19.53294 -17.11718 -16.38400 -15.69864 -14.78127 -14.23611 -14.02318 -13.19772 -13.04918 -12.80843 -12.65251 -12.16030 -12.08247 -11.83784 -11.49780 -11.40563 -11.13714 -10.85135 -10.81030 -10.66325 -10.32143 -10.22346 -9.88966 -9.67214 -9.29566 -9.11816 -8.50868 -7.49059 -6.15173 -4.12521 1.17619 2.19142 3.19218 3.24913 3.35104 3.38327 4.13833 4.24427 4.37872 4.98944 5.16226 5.26900 5.38986 5.43508 5.63927 5.97522 6.09390 6.10590 6.20616 6.33544 6.65625 6.81007 7.03334 7.07627 7.43821 7.62630 7.92183 8.30288 8.56554 8.91846 9.49711 10.97618 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.035165 B = 0.005930 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.061862 B = 4720.777402 C = 5043.959070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C 0.193 3.807 4 H 0.004 0.996 5 C -0.533 4.533 6 H 0.076 0.924 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.862 3.138 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.246 1.246 13 N -0.675 5.675 14 C 0.069 3.931 15 C -0.102 4.102 16 H 0.130 0.870 17 C -0.148 4.148 18 C 0.005 3.995 19 Cl -0.091 7.091 20 Cl -0.104 7.104 21 H 0.035 0.965 22 H 0.063 0.937 23 H 0.034 0.966 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.264 0.736 27 H 0.340 0.660 28 H 0.038 0.962 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.110 6.808 6.890 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C 0.084 3.916 4 H 0.022 0.978 5 C -0.570 4.570 6 H 0.094 0.906 7 C -0.126 4.126 8 N -0.529 5.529 9 Si 0.689 3.311 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.170 1.170 13 N -0.307 5.307 14 C -0.060 4.060 15 C -0.121 4.121 16 H 0.148 0.852 17 C -0.186 4.186 18 C -0.046 4.046 19 Cl -0.064 7.064 20 Cl -0.077 7.077 21 H 0.054 0.946 22 H 0.082 0.918 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.136 0.864 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.411 6.094 7.081 17.174 hybrid contribution -0.127 0.414 -1.235 1.309 sum -14.538 6.508 5.846 16.967 Atomic orbital electron populations 1.21977 0.98685 1.00003 1.00626 1.21890 0.92729 0.99289 1.00929 1.19451 0.95508 0.90929 0.85739 0.97826 1.21237 0.89393 1.43721 1.02692 0.90562 1.24906 0.94754 0.94184 0.98739 1.69959 1.10752 1.44428 1.27780 0.87254 0.82550 0.78037 0.83292 1.20822 1.21311 1.17033 1.60600 1.07256 1.32882 1.29920 1.21992 0.97614 0.94798 0.91644 1.23399 0.91739 0.97640 0.99339 0.85198 1.24023 1.00905 0.91814 1.01906 1.26850 0.99788 0.96692 0.81306 1.98734 1.65244 1.61210 1.81185 1.98735 1.98553 1.98413 1.11984 0.94632 0.91813 0.94644 0.93001 0.92254 0.92619 0.84198 0.94372 0.89394 0.86353 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.40 37.16 0.35 -2.56 16 2 C -0.11 -2.42 4.83 -26.73 -0.13 -2.55 16 3 C 0.19 4.37 1.75 -68.86 -0.12 4.25 16 4 H 0.00 0.10 6.29 -51.93 -0.33 -0.23 16 5 C -0.53 -14.37 9.03 -34.44 -0.31 -14.68 16 6 H 0.08 2.22 7.69 -52.49 -0.40 1.81 16 7 C 0.08 2.17 5.36 -17.82 -0.10 2.07 16 8 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 9 Si 0.86 20.78 25.76 -169.99 -4.38 16.40 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.25 -5.60 5.32 56.52 0.30 -5.30 16 13 N -0.68 -12.98 6.12 -107.95 -0.66 -13.64 16 14 C 0.07 1.08 5.34 -3.82 -0.02 1.06 16 15 C -0.10 -1.28 5.77 -90.62 -0.52 -1.80 16 16 H 0.13 1.58 8.05 -51.93 -0.42 1.17 16 17 C -0.15 -1.46 9.93 -26.73 -0.27 -1.72 16 18 C 0.01 0.06 3.62 -26.73 -0.10 -0.04 16 19 Cl -0.09 -1.20 27.03 -51.86 -1.40 -2.60 16 20 Cl -0.10 -1.25 29.29 -51.86 -1.52 -2.77 16 21 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 1.14 5.33 -51.93 -0.28 0.86 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 1.20 4.71 -51.93 -0.24 0.95 16 25 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.34 6.52 7.79 -39.29 -0.31 6.22 16 28 H 0.04 0.61 7.96 -51.93 -0.41 0.19 16 29 H 0.09 1.40 3.67 -51.93 -0.19 1.21 16 30 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 277.24 15.07 4.18 4.18 Total: -1.00 -28.64 277.24 -8.15 -36.79 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -3.93 Total: 3.50 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -1.21 Total: -15.96 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.11 Total: -39.54 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.38 Total: 16.40 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -2.92 Total: -5.37 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.64 -8.15 -36.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846993186.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.130 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds