Wall clock time and date at job start Mon Mar 30 2020 18:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47130 * 2 1 4 4 H 1.09000 * 109.46777 * 305.94355 * 3 2 1 5 5 C 1.50699 * 109.46852 * 185.94685 * 3 2 1 6 6 H 1.07999 * 119.99830 * 245.07861 * 5 3 2 7 7 C 1.37879 * 120.00024 * 65.08635 * 5 3 2 8 8 N 1.31516 * 119.99643 * 192.38992 * 7 5 3 9 9 Si 1.86795 * 120.00065 * 12.38435 * 7 5 3 10 10 H 1.48501 * 109.47112 * 91.27626 * 9 7 5 11 11 H 1.48499 * 109.47006 * 211.27599 * 9 7 5 12 12 H 1.48505 * 109.47342 * 331.27745 * 9 7 5 13 13 N 1.46901 * 109.47124 * 65.94758 * 3 2 1 14 14 C 1.46904 * 110.99731 * 258.81370 * 13 3 2 15 15 C 1.52995 * 109.47058 * 185.16522 * 14 13 3 16 16 H 1.09004 * 115.55045 * 29.33080 * 15 14 13 17 17 C 1.53003 * 117.50227 * 175.00142 * 15 14 13 18 18 C 1.52994 * 60.00256 * 107.49169 * 17 15 14 19 19 Cl 1.80298 * 117.49991 * 252.51535 * 18 17 15 20 20 Cl 1.80301 * 117.49937 * 107.48962 * 18 17 15 21 21 H 1.09001 * 109.47231 * 186.22624 * 1 2 3 22 22 H 1.09003 * 109.47360 * 306.23079 * 1 2 3 23 23 H 1.09001 * 109.46968 * 66.22742 * 1 2 3 24 24 H 1.08998 * 109.47160 * 239.99844 * 2 1 3 25 25 H 1.09004 * 109.47180 * 119.99715 * 2 1 3 26 26 H 0.97003 * 119.99578 * 179.97438 * 8 7 5 27 27 H 1.00900 * 111.00015 * 134.86023 * 13 3 2 28 28 H 1.08994 * 109.47200 * 305.16889 * 14 13 3 29 29 H 1.09000 * 109.47118 * 65.16921 * 14 13 3 30 30 H 1.09001 * 117.49833 * 214.98840 * 17 15 14 31 31 H 1.08997 * 117.49395 * 359.97243 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5924 1.9861 -0.8320 5 6 3.5398 1.4450 -0.1472 6 1 4.1607 1.8105 0.6573 7 6 4.1192 0.9808 -1.3090 8 7 5.4137 0.7528 -1.3526 9 14 3.0656 0.6758 -2.8210 10 1 3.0298 1.9038 -3.6553 11 1 3.6436 -0.4418 -3.6098 12 1 1.6859 0.3230 -2.4001 13 7 1.6710 2.0924 1.2647 14 6 0.4982 2.9592 1.0886 15 6 0.2228 3.7153 2.3899 16 1 1.0963 3.9188 3.0092 17 6 -0.8929 4.7623 2.3761 18 6 -1.1003 3.4330 3.1046 19 17 -2.2155 2.2346 2.3489 20 17 -1.0953 3.4619 4.9074 21 1 -0.3634 -1.0216 0.1115 22 1 -0.3634 0.6074 0.8290 23 1 -0.3633 0.4143 -0.9405 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.8213 0.4258 -2.1699 27 1 2.4490 2.6096 1.6459 28 1 0.6908 3.6728 0.2875 29 1 -0.3686 2.3501 0.8319 30 1 -0.7533 5.6544 2.9867 31 1 -1.4303 4.9127 1.4399 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846993186.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:46 Heat of formation + Delta-G solvation = -7.772975 kcal Electronic energy + Delta-G solvation = -14683.807490 eV Core-core repulsion = 12052.059067 eV Total energy + Delta-G solvation = -2631.748423 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 251.054 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.47628 -37.87779 -36.96652 -36.36214 -34.32177 -32.74665 -29.62759 -26.22229 -24.10403 -23.22802 -21.92878 -21.22420 -19.00106 -17.51343 -17.26471 -16.08357 -15.71215 -15.66377 -14.81921 -14.61564 -14.15656 -13.72001 -13.66324 -13.57477 -13.07184 -12.89648 -12.75750 -12.63125 -12.36967 -12.12489 -11.91087 -11.67795 -11.65127 -11.41418 -11.09250 -11.02011 -10.69200 -10.57965 -9.05411 -8.31231 -6.32457 0.24858 1.24855 1.33955 1.38326 1.48211 2.28451 2.35128 3.03615 3.15567 3.28368 3.87907 4.07778 4.29674 4.47931 4.53624 4.61240 4.67744 4.71053 4.76723 4.92632 5.07645 5.22014 5.30370 5.45444 5.57741 5.82051 6.02475 6.50424 6.68354 6.89012 7.34273 8.84975 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.035165 B = 0.005930 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.061862 B = 4720.777402 C = 5043.959070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C 0.199 3.801 4 H 0.005 0.995 5 C -0.534 4.534 6 H 0.040 0.960 7 C 0.020 3.980 8 N -0.942 5.942 9 Si 0.923 3.077 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.222 1.222 13 N -0.678 5.678 14 C 0.070 3.930 15 C -0.115 4.115 16 H 0.132 0.868 17 C -0.117 4.117 18 C -0.004 4.004 19 Cl -0.102 7.102 20 Cl -0.105 7.105 21 H 0.052 0.948 22 H 0.070 0.930 23 H 0.043 0.957 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.265 0.735 27 H 0.337 0.663 28 H 0.039 0.961 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.563 7.599 6.609 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C 0.089 3.911 4 H 0.023 0.977 5 C -0.572 4.572 6 H 0.058 0.942 7 C -0.178 4.178 8 N -0.581 5.581 9 Si 0.747 3.253 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.145 1.145 13 N -0.309 5.309 14 C -0.059 4.059 15 C -0.134 4.134 16 H 0.149 0.851 17 C -0.155 4.155 18 C -0.056 4.056 19 Cl -0.075 7.075 20 Cl -0.078 7.078 21 H 0.071 0.929 22 H 0.089 0.911 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.155 0.845 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.161 0.839 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.894 6.897 6.821 19.480 hybrid contribution 0.690 0.205 -1.035 1.261 sum -16.204 7.101 5.785 18.614 Atomic orbital electron populations 1.21890 0.95741 1.01464 1.01425 1.21817 0.95333 0.98139 0.99678 1.19288 0.92422 0.92027 0.87340 0.97700 1.21564 0.91743 1.42393 1.01484 0.94215 1.25755 0.95836 0.94220 1.01993 1.70099 1.12866 1.46461 1.28723 0.86265 0.81946 0.77908 0.79170 1.20249 1.21526 1.14474 1.60551 1.08217 1.34152 1.27985 1.21992 0.95786 0.94561 0.93569 1.23241 0.92610 0.99445 0.98138 0.85062 1.24200 0.97757 0.91318 1.02242 1.27002 0.99226 0.98014 0.81324 1.98732 1.65483 1.61934 1.81338 1.98737 1.98535 1.98419 1.12146 0.92899 0.91112 0.93761 0.94220 0.93664 0.92609 0.84530 0.94250 0.89287 0.83883 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 9.40 71.98 0.68 -4.44 16 2 C -0.11 -4.73 4.83 30.60 0.15 -4.59 16 3 C 0.20 8.86 1.75 44.17 0.08 8.94 16 4 H 0.01 0.24 6.29 -2.39 -0.02 0.22 16 5 C -0.53 -29.35 9.03 25.60 0.23 -29.11 16 6 H 0.04 2.41 7.69 -2.91 -0.02 2.39 16 7 C 0.02 1.16 5.36 84.65 0.45 1.61 16 8 N -0.94 -57.89 13.96 21.45 0.30 -57.59 16 9 Si 0.92 42.64 25.76 68.60 1.77 44.41 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.22 -9.30 5.32 99.48 0.53 -8.77 16 13 N -0.68 -25.57 6.12 -495.45 -3.03 -28.60 16 14 C 0.07 2.06 5.34 86.30 0.46 2.52 16 15 C -0.11 -2.62 5.77 -10.79 -0.06 -2.68 16 16 H 0.13 2.97 8.05 -2.38 -0.02 2.95 16 17 C -0.12 -1.89 9.93 30.59 0.30 -1.59 16 18 C 0.00 -0.10 3.62 30.59 0.11 0.02 16 19 Cl -0.10 -2.45 27.03 -2.72 -0.07 -2.52 16 20 Cl -0.11 -2.34 29.29 -2.72 -0.08 -2.42 16 21 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.07 2.34 5.33 -2.39 -0.01 2.32 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.04 1.76 4.71 -2.39 -0.01 1.75 16 25 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.34 13.01 7.79 -89.69 -0.70 12.31 16 28 H 0.04 1.16 7.96 -2.39 -0.02 1.14 16 29 H 0.09 2.61 3.67 -2.39 -0.01 2.60 16 30 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -62.10 277.24 1.55 -60.55 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.27 Total: 15.51 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 2.40 Total: -29.33 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -2.73 Total: -86.19 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.77 Total: 44.41 kcal Atomic # 17 Polarization: -4.79 SS G_CDS: -0.15 Total: -4.94 kcal Total: -62.10 1.55 -60.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846993186.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.777 kcal (2) G-P(sol) polarization free energy of solvation -62.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds