Wall clock time and date at job start Mon Mar 30 2020 18:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47121 * 119.99710 * 2 1 4 4 C 1.32866 * 120.00077 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00288 * 180.27538 * 4 3 2 6 6 C 1.52997 * 109.47174 * 124.72457 * 5 4 3 7 7 N 1.46901 * 109.47242 * 180.02562 * 6 5 4 8 8 C 1.46959 * 110.99919 * 293.80054 * 7 6 5 9 9 C 1.53046 * 109.36572 * 176.80905 * 8 7 6 10 10 N 1.46964 * 109.36454 * 58.40198 * 9 8 7 11 11 C 1.46901 * 110.99944 * 176.81100 * 10 9 8 12 12 C 1.50698 * 109.47124 * 58.97827 * 11 10 9 13 13 H 1.08002 * 119.99834 * 5.00896 * 12 11 10 14 14 C 1.37874 * 119.99916 * 185.00600 * 12 11 10 15 15 N 1.31513 * 119.99963 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99934 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47209 * 90.00277 * 16 14 12 18 18 H 1.48500 * 109.47130 * 210.00155 * 16 14 12 19 19 H 1.48500 * 109.47140 * 330.00024 * 16 14 12 20 20 C 1.46959 * 110.87912 * 300.68020 * 10 9 8 21 21 C 1.46951 * 111.00159 * 170.00002 * 7 6 5 22 22 H 1.07997 * 119.99903 * 0.02562 * 1 2 3 23 23 H 1.07996 * 119.99372 * 179.97438 * 1 2 3 24 24 H 1.07996 * 120.00432 * 179.97438 * 2 1 3 25 25 H 1.08006 * 119.99855 * 359.97438 * 3 2 1 26 26 H 1.08006 * 120.00068 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.47402 * 244.72829 * 5 4 3 28 28 H 1.09002 * 109.47147 * 4.72563 * 5 4 3 29 29 H 1.09002 * 109.47102 * 299.99957 * 6 5 4 30 30 H 1.08994 * 109.47321 * 60.00560 * 6 5 4 31 31 H 1.09007 * 109.48886 * 296.77723 * 8 7 6 32 32 H 1.09001 * 109.48871 * 56.84213 * 8 7 6 33 33 H 1.09000 * 109.49078 * 298.43651 * 9 8 7 34 34 H 1.08997 * 109.48979 * 178.36686 * 9 8 7 35 35 H 1.09001 * 109.46863 * 178.97397 * 11 10 9 36 36 H 1.08995 * 109.46950 * 298.97548 * 11 10 9 37 37 H 0.97007 * 119.99833 * 179.97438 * 15 14 12 38 38 H 1.09007 * 109.48886 * 299.35231 * 20 10 9 39 39 H 1.09001 * 109.48871 * 179.28742 * 20 10 9 40 40 H 1.09003 * 109.49192 * 303.15569 * 21 7 6 41 41 H 1.08993 * 109.49272 * 63.21900 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 3.3929 1.2742 0.0005 5 6 4.1464 2.5793 0.0068 6 6 5.1125 2.6048 1.1928 7 7 5.8466 3.8772 1.1993 8 6 6.7307 3.9811 0.0300 9 6 7.4154 5.3499 0.0315 10 7 8.1752 5.5133 1.2788 11 6 8.9092 6.7858 1.2852 12 6 7.9370 7.9273 1.1346 13 1 6.8745 7.7339 1.1245 14 6 8.4039 9.2185 1.0096 15 7 9.6978 9.4539 1.0214 16 14 7.1988 10.6335 0.8221 17 1 6.8386 11.1580 2.1638 18 1 7.8257 11.7146 0.0200 19 1 5.9742 10.1527 0.1333 20 6 7.2911 5.4094 2.4481 21 6 6.6063 4.0406 2.4466 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5399 -0.9353 -0.0004 24 1 1.8688 -0.9352 0.0004 25 1 1.5242 2.2095 -0.0004 26 1 3.9330 0.3389 0.0014 27 1 4.7084 2.6789 -0.9218 28 1 3.4411 3.4057 0.0950 29 1 4.5505 2.5052 2.1215 30 1 5.8179 1.7785 1.1047 31 1 7.4862 3.1966 0.0744 32 1 6.1431 3.8694 -0.8812 33 1 6.6614 6.1338 -0.0403 34 1 8.0936 5.4182 -0.8190 35 1 9.4482 6.8895 2.2270 36 1 9.6180 6.8005 0.4573 37 1 10.0263 10.3624 0.9330 38 1 6.5356 6.1940 2.4037 39 1 7.8787 5.5211 3.3594 40 1 5.9281 3.9723 3.2972 41 1 7.3603 3.2568 2.5185 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878311986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:10 Heat of formation + Delta-G solvation = 17.468998 kcal Electronic energy + Delta-G solvation = -18002.997615 eV Core-core repulsion = 15303.452302 eV Total energy + Delta-G solvation = -2699.545313 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.23710 -37.59104 -36.33079 -34.59935 -33.30429 -31.77229 -30.33278 -28.45245 -26.54048 -24.52912 -23.90396 -22.80172 -21.12324 -20.72084 -20.42522 -18.46722 -17.23090 -16.52479 -16.49497 -15.87896 -15.77037 -15.57772 -15.38432 -15.05339 -14.61051 -14.30684 -13.74424 -13.51851 -13.26481 -13.06136 -12.81743 -12.80362 -12.72098 -12.30516 -12.21621 -12.10116 -11.96633 -11.85426 -11.77946 -11.74699 -11.42795 -11.26081 -10.61535 -9.30239 -9.14012 -9.01355 -8.16167 -6.35736 0.51598 1.36476 1.36689 1.47987 2.23695 2.36997 2.97621 3.08329 3.38498 3.90686 4.04487 4.07561 4.18646 4.25036 4.28558 4.49667 4.52994 4.54839 4.56672 4.64939 4.71286 4.77309 4.88842 4.93586 5.04965 5.09328 5.12915 5.21171 5.24262 5.27854 5.32627 5.47995 5.70332 5.72786 5.83560 6.02536 6.04537 6.12966 6.15008 6.31882 6.52176 6.84996 7.35630 8.86307 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.031461 B = 0.003771 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.763501 B = 7423.936251 C = 7934.589018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C -0.148 4.148 4 C -0.134 4.134 5 C -0.085 4.085 6 C 0.066 3.934 7 N -0.553 5.553 8 C 0.069 3.931 9 C 0.066 3.934 10 N -0.545 5.545 11 C 0.200 3.800 12 C -0.555 4.555 13 H 0.055 0.945 14 C 0.011 3.989 15 N -0.927 5.927 16 Si 0.958 3.042 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.269 1.269 20 C 0.064 3.936 21 C 0.071 3.929 22 H 0.099 0.901 23 H 0.114 0.886 24 H 0.120 0.880 25 H 0.110 0.890 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.092 0.908 33 H 0.023 0.977 34 H 0.061 0.939 35 H 0.003 0.997 36 H 0.007 0.993 37 H 0.265 0.735 38 H 0.022 0.978 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.347 -17.813 -1.271 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.160 4.160 3 C -0.166 4.166 4 C -0.153 4.153 5 C -0.123 4.123 6 C -0.061 4.061 7 N -0.278 5.278 8 C -0.059 4.059 9 C -0.063 4.063 10 N -0.269 5.269 11 C 0.073 3.927 12 C -0.593 4.593 13 H 0.073 0.927 14 C -0.188 4.188 15 N -0.567 5.567 16 Si 0.783 3.217 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.194 1.194 20 C -0.065 4.065 21 C -0.058 4.058 22 H 0.117 0.883 23 H 0.133 0.867 24 H 0.138 0.862 25 H 0.128 0.872 26 H 0.139 0.861 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.021 0.979 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.203 -17.684 -1.275 22.717 hybrid contribution -0.029 1.282 -0.067 1.284 sum -14.232 -16.402 -1.342 21.757 Atomic orbital electron populations 1.24556 0.95555 1.02768 0.98943 1.22131 0.95921 0.96722 1.01257 1.22076 0.94929 0.97161 1.02409 1.23375 0.94916 0.98402 0.98580 1.20650 0.97943 0.95451 0.98240 1.22028 0.95699 0.88922 0.99490 1.62098 1.28304 1.34867 1.02511 1.22143 0.94182 0.95473 0.94144 1.21934 0.95585 0.96319 0.92439 1.62632 1.26965 1.34586 1.02681 1.19394 0.93019 0.85017 0.95266 1.21953 0.93637 0.93298 1.50457 0.92714 1.25824 0.96772 1.01627 0.94615 1.70066 1.14116 1.21552 1.50916 0.85550 0.79027 0.78718 0.78369 1.19862 1.20482 1.19382 1.21972 0.94481 0.96422 0.93622 1.22087 0.95744 0.95524 0.92398 0.88270 0.86730 0.86166 0.87196 0.86106 0.90666 0.91546 0.90263 0.94139 0.94299 0.88959 0.95867 0.92069 0.97881 0.97504 0.92572 0.96006 0.91698 0.89027 0.94162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 14.43 66.64 0.96 -1.39 16 2 C -0.14 -2.13 9.83 23.43 0.23 -1.90 16 3 C -0.15 -2.54 9.44 23.43 0.22 -2.32 16 4 C -0.13 -2.28 9.22 24.51 0.23 -2.06 16 5 C -0.09 -1.70 5.60 29.85 0.17 -1.53 16 6 C 0.07 1.45 4.94 86.30 0.43 1.88 16 7 N -0.55 -16.19 4.71 -895.73 -4.22 -20.41 16 8 C 0.07 2.11 5.41 86.31 0.47 2.58 16 9 C 0.07 2.67 5.24 86.31 0.45 3.12 16 10 N -0.54 -24.37 4.92 -900.26 -4.43 -28.80 16 11 C 0.20 10.85 5.14 85.56 0.44 11.29 16 12 C -0.55 -31.56 7.66 25.60 0.20 -31.36 16 13 H 0.05 3.12 5.82 -2.91 -0.02 3.10 16 14 C 0.01 0.63 5.46 84.65 0.46 1.09 16 15 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 16 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 C 0.06 2.54 5.32 86.31 0.46 3.00 16 21 C 0.07 2.15 5.61 86.31 0.48 2.64 16 22 H 0.10 1.24 8.05 -2.91 -0.02 1.21 16 23 H 0.11 1.10 8.06 -2.91 -0.02 1.07 16 24 H 0.12 1.51 8.06 -2.91 -0.02 1.48 16 25 H 0.11 1.91 7.87 -2.91 -0.02 1.89 16 26 H 0.12 1.76 8.05 -2.91 -0.02 1.74 16 27 H 0.08 1.50 6.49 -2.39 -0.02 1.48 16 28 H 0.07 1.46 7.82 -2.39 -0.02 1.44 16 29 H 0.08 1.64 8.03 -2.39 -0.02 1.62 16 30 H 0.04 0.84 8.12 -2.39 -0.02 0.82 16 31 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.09 2.45 6.34 -2.39 -0.02 2.43 16 33 H 0.02 1.05 6.62 -2.39 -0.02 1.04 16 34 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.00 0.18 8.12 -2.39 -0.02 0.16 16 36 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.27 15.06 8.31 -92.70 -0.77 14.28 16 38 H 0.02 0.97 6.78 -2.38 -0.02 0.96 16 39 H 0.06 2.57 8.12 -2.39 -0.02 2.55 16 40 H 0.09 2.39 8.07 -2.39 -0.02 2.37 16 41 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -63.27 328.35 -0.18 -63.45 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.96 Total: 9.61 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 5.19 Total: -14.96 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -8.36 Total: -104.91 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -63.27 -0.18 -63.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878311986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.922 kcal (2) G-P(sol) polarization free energy of solvation -63.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds