Wall clock time and date at job start Mon Mar 30 2020 18:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47338 * 2 1 4 4 C 1.52998 * 109.47338 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47412 * 181.60626 * 4 3 2 6 6 C 1.36937 * 120.00057 * 96.90571 * 5 4 3 7 7 H 1.08004 * 120.00134 * 162.64012 * 6 5 4 8 8 C 1.38813 * 120.00094 * 342.64694 * 6 5 4 9 9 N 1.31620 * 119.99861 * 355.46680 * 8 6 5 10 10 Si 1.86796 * 120.00065 * 175.47250 * 8 6 5 11 11 H 1.48501 * 109.47244 * 89.99859 * 10 8 6 12 12 H 1.48508 * 109.47160 * 209.99543 * 10 8 6 13 13 H 1.48498 * 109.47038 * 329.99380 * 10 8 6 14 14 C 1.46499 * 120.00078 * 276.90969 * 5 4 3 15 15 C 1.50691 * 109.47317 * 263.68522 * 14 5 4 16 16 N 1.36341 * 125.89497 * 263.05688 * 15 14 5 17 17 H 0.97003 * 125.62971 * 0.03460 * 16 15 14 18 18 C 1.36338 * 108.73441 * 179.97438 * 16 15 14 19 19 C 1.34852 * 108.21682 * 0.02562 * 18 16 15 20 20 C 1.50695 * 126.29359 * 180.02562 * 19 18 16 21 21 C 1.34863 * 125.89246 * 83.37724 * 15 14 5 22 22 C 1.50696 * 126.28543 * 0.02562 * 21 15 14 23 23 H 1.08997 * 109.47657 * 59.99612 * 1 2 3 24 24 H 1.09005 * 109.47012 * 180.02562 * 1 2 3 25 25 H 1.09011 * 109.46804 * 299.99374 * 1 2 3 26 26 H 1.08999 * 109.46897 * 239.99949 * 2 1 3 27 27 H 1.09007 * 109.47201 * 120.00634 * 2 1 3 28 28 H 1.09003 * 109.46476 * 60.00302 * 3 2 1 29 29 H 1.08997 * 109.47063 * 300.00751 * 3 2 1 30 30 H 1.09001 * 109.46979 * 61.60479 * 4 3 2 31 31 H 1.09000 * 109.47395 * 301.60792 * 4 3 2 32 32 H 0.96997 * 120.00159 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.47063 * 143.68098 * 14 5 4 34 34 H 1.09006 * 109.46911 * 23.68785 * 14 5 4 35 35 H 1.08001 * 125.89418 * 180.02562 * 18 16 15 36 36 H 1.09000 * 109.47518 * 90.01690 * 20 19 18 37 37 H 1.09003 * 109.47036 * 330.01753 * 20 19 18 38 38 H 1.09003 * 109.47490 * 210.01429 * 20 19 18 39 39 H 1.09000 * 109.47348 * 270.64482 * 22 21 15 40 40 H 1.09000 * 109.47744 * 30.64905 * 22 21 15 41 41 H 1.09004 * 109.46328 * 150.64845 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8231 0.0381 6 6 4.4216 3.3876 1.2316 7 1 5.0330 4.2779 1.2440 8 6 4.0041 2.8157 2.4255 9 7 3.1866 1.7843 2.4107 10 14 4.6024 3.5099 4.0532 11 1 3.6637 4.5630 4.5172 12 1 4.6641 2.4223 5.0625 13 1 5.9549 4.0963 3.8741 14 6 4.1582 3.5998 -1.2001 15 6 5.5680 3.5259 -1.7272 16 7 6.5451 4.4559 -1.5292 17 1 6.4486 5.2781 -1.0236 18 6 7.6805 4.0389 -2.1583 19 6 7.4238 2.8546 -2.7501 20 6 8.3951 2.0309 -3.5557 21 6 6.0791 2.5314 -2.4811 22 6 5.3474 1.2992 -2.9472 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 1.6767 1.9562 0.8901 29 1 1.6766 1.9563 -0.8899 30 1 3.9329 0.9539 -0.9049 31 1 3.9338 0.9037 0.8743 32 1 2.8946 1.3848 3.2449 33 1 3.8995 4.6393 -0.9987 34 1 3.4712 3.1915 -1.9414 35 1 8.6229 4.5659 -2.1792 36 1 8.9218 1.3417 -2.8957 37 1 9.1146 2.6899 -4.0417 38 1 7.8515 1.4652 -4.3125 39 1 5.4534 0.5103 -2.2026 40 1 4.2912 1.5327 -3.0812 41 1 5.7684 0.9634 -3.8949 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140861184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:49 Heat of formation + Delta-G solvation = 34.981190 kcal Electronic energy + Delta-G solvation = -19111.087167 eV Core-core repulsion = 16412.301240 eV Total energy + Delta-G solvation = -2698.785927 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.91190 -38.03579 -35.07118 -33.89693 -33.63106 -31.61362 -29.85771 -28.32169 -27.20485 -26.10547 -24.83990 -22.68072 -21.51320 -20.20028 -19.54951 -18.63617 -17.84717 -17.06432 -15.86106 -15.64572 -15.38747 -14.82481 -14.73879 -14.64815 -14.06896 -13.57381 -13.52095 -13.46005 -13.28517 -13.18984 -13.08415 -12.87214 -12.85151 -12.47496 -12.40281 -12.19474 -11.95013 -11.91163 -11.67752 -11.52625 -11.30998 -11.08755 -10.26128 -9.12200 -8.78691 -8.45707 -7.64122 -5.15222 1.45087 1.46942 1.53194 1.58115 2.15861 2.55426 2.71928 3.39796 3.88602 4.30442 4.39625 4.41708 4.45480 4.51414 4.56626 4.63391 4.70564 4.82266 4.83989 4.92913 4.94551 5.00583 5.11006 5.12996 5.17926 5.28820 5.32041 5.34876 5.38329 5.58489 5.60678 5.63053 5.69702 5.72465 6.01136 6.30369 6.39346 6.50748 6.52367 6.99422 7.30283 7.98855 8.40015 9.28265 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.015993 B = 0.008309 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.302422 B = 3369.106925 C = 4682.461622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C -0.100 4.100 4 C 0.173 3.827 5 N -0.600 5.600 6 C -0.247 4.247 7 H 0.061 0.939 8 C -0.051 4.051 9 N -0.913 5.913 10 Si 0.961 3.039 11 H -0.289 1.289 12 H -0.297 1.297 13 H -0.282 1.282 14 C 0.213 3.787 15 C 0.007 3.993 16 N -0.553 5.553 17 H 0.416 0.584 18 C -0.029 4.029 19 C -0.193 4.193 20 C -0.068 4.068 21 C -0.190 4.190 22 C -0.063 4.063 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.017 0.983 30 H 0.016 0.984 31 H 0.066 0.934 32 H 0.242 0.758 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.185 0.815 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 0.664 -9.955 10.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C -0.140 4.140 4 C 0.049 3.951 5 N -0.321 5.321 6 C -0.377 4.377 7 H 0.079 0.921 8 C -0.246 4.246 9 N -0.561 5.561 10 Si 0.791 3.209 11 H -0.217 1.217 12 H -0.224 1.224 13 H -0.208 1.208 14 C 0.085 3.915 15 C -0.109 4.109 16 N -0.147 5.147 17 H 0.253 0.747 18 C -0.160 4.160 19 C -0.200 4.200 20 C -0.125 4.125 21 C -0.197 4.197 22 C -0.120 4.120 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.202 0.798 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.686 0.722 -9.719 10.419 hybrid contribution 0.210 0.793 1.576 1.776 sum 3.896 1.515 -8.143 9.153 Atomic orbital electron populations 1.21672 0.95540 1.01368 1.00977 1.21301 0.95887 0.97249 1.00205 1.21918 0.97976 0.95418 0.98682 1.20877 0.92358 0.84290 0.97622 1.44201 1.75233 1.10940 1.01708 1.19359 1.24688 1.08971 0.84699 0.92129 1.25478 0.99470 0.99627 1.00022 1.70278 1.36464 1.24918 1.24406 0.85374 0.77588 0.76990 0.80951 1.21663 1.22367 1.20755 1.19207 0.88760 0.95401 0.88104 1.21583 0.94173 0.92402 1.02743 1.41919 1.10093 1.19936 1.42771 0.74747 1.21968 0.91916 0.98848 1.03244 1.19754 0.95296 0.97933 1.07052 1.20047 0.96481 0.98190 0.97815 1.19420 0.95449 0.98497 1.06334 1.20010 0.98481 0.93764 0.99794 0.92711 0.91880 0.94262 0.92721 0.93927 0.92618 0.96407 0.96548 0.91588 0.94787 0.93954 0.91306 0.79832 0.92756 0.90935 0.92007 0.93864 0.92942 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 9.91 71.98 0.71 -3.66 16 2 C -0.11 -4.08 5.93 30.59 0.18 -3.90 16 3 C -0.10 -4.48 4.94 30.59 0.15 -4.33 16 4 C 0.17 8.33 4.84 86.38 0.42 8.75 16 5 N -0.60 -29.36 2.53 -706.36 -1.79 -31.15 16 6 C -0.25 -13.20 9.73 84.03 0.82 -12.39 16 7 H 0.06 3.18 7.83 -2.91 -0.02 3.16 16 8 C -0.05 -2.80 5.27 84.86 0.45 -2.35 16 9 N -0.91 -50.74 7.94 21.65 0.17 -50.57 16 10 Si 0.96 45.03 29.56 68.60 2.03 47.06 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 C 0.21 8.79 5.95 85.63 0.51 9.30 16 15 C 0.01 0.27 6.70 41.08 0.28 0.55 16 16 N -0.55 -18.45 6.07 -182.77 -1.11 -19.56 16 17 H 0.42 12.18 8.96 -92.71 -0.83 11.35 16 18 C -0.03 -0.87 11.85 83.21 0.99 0.11 16 19 C -0.19 -6.26 6.14 -20.00 -0.12 -6.38 16 20 C -0.07 -1.69 10.22 71.23 0.73 -0.96 16 21 C -0.19 -6.99 6.14 -19.99 -0.12 -7.11 16 22 C -0.06 -2.10 8.80 71.23 0.63 -1.47 16 23 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.06 2.90 6.42 -2.39 -0.02 2.89 16 29 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.02 0.74 5.78 -2.39 -0.01 0.73 16 31 H 0.07 3.67 5.74 -2.39 -0.01 3.65 16 32 H 0.24 13.34 8.31 -92.71 -0.77 12.57 16 33 H 0.04 1.71 8.09 -2.39 -0.02 1.69 16 34 H 0.07 2.70 7.25 -2.38 -0.02 2.68 16 35 H 0.18 4.12 8.06 -2.91 -0.02 4.09 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.44 7.34 -2.39 -0.02 1.42 16 39 H 0.04 1.54 7.33 -2.39 -0.02 1.52 16 40 H 0.05 1.72 7.18 -2.39 -0.02 1.70 16 41 H 0.07 1.94 7.34 -2.39 -0.02 1.93 16 Total: -1.00 -60.55 324.63 5.08 -55.47 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.17 Total: 22.60 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 5.61 Total: -23.84 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -2.73 Total: -101.29 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -60.55 5.08 -55.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140861184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.451 kcal (2) G-P(sol) polarization free energy of solvation -60.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds