Wall clock time and date at job start Mon Mar 30 2020 18:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48720 * 111.00096 * 2 1 4 4 H 1.08997 * 112.23377 * 44.16469 * 3 2 1 5 5 C 1.54604 * 104.22327 * 282.48759 * 3 2 1 6 6 C 1.54287 * 104.84435 * 334.82049 * 5 3 2 7 7 C 1.48716 * 110.99923 * 245.53067 * 2 1 3 8 8 H 1.08996 * 112.75160 * 315.56315 * 7 2 1 9 9 C 1.53708 * 107.24030 * 191.65523 * 7 2 1 10 10 C 1.53131 * 108.89229 * 295.91398 * 9 7 2 11 11 H 1.08998 * 109.43617 * 174.09680 * 10 9 7 12 12 N 1.46901 * 109.42758 * 293.93663 * 10 9 7 13 13 C 1.47478 * 111.00224 * 194.31740 * 12 10 9 14 14 C 1.53512 * 87.93382 * 138.70119 * 13 12 10 15 15 C 1.50703 * 114.17142 * 220.32912 * 14 13 12 16 16 H 1.08002 * 119.99480 * 93.84112 * 15 14 13 17 17 C 1.37875 * 119.99966 * 273.84010 * 15 14 13 18 18 N 1.31510 * 120.00195 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99806 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47206 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46790 * 120.00211 * 19 17 15 22 22 H 1.48493 * 109.46986 * 240.00251 * 19 17 15 23 23 C 1.47476 * 111.00146 * 290.28939 * 12 10 9 24 24 C 1.53134 * 109.72733 * 54.01004 * 10 9 7 25 25 H 1.08996 * 109.47312 * 174.47097 * 1 2 3 26 26 H 1.09000 * 109.47141 * 294.46372 * 1 2 3 27 27 H 1.09000 * 109.47261 * 54.46411 * 1 2 3 28 28 H 1.08992 * 110.36634 * 215.97837 * 5 3 2 29 29 H 1.09008 * 110.36038 * 93.66055 * 5 3 2 30 30 H 1.08998 * 110.36533 * 241.15771 * 6 5 3 31 31 H 1.09004 * 110.45452 * 118.88633 * 6 5 3 32 32 H 1.09007 * 109.56986 * 176.08772 * 9 7 2 33 33 H 1.08999 * 109.66576 * 55.79714 * 9 7 2 34 34 H 1.08994 * 113.48039 * 253.47139 * 13 12 10 35 35 H 1.09006 * 113.47659 * 23.93578 * 13 12 10 36 36 H 1.08998 * 114.16804 * 87.62762 * 14 13 12 37 37 H 0.96999 * 119.99878 * 179.97438 * 18 17 15 38 38 H 1.09008 * 113.47455 * 336.06446 * 23 12 10 39 39 H 1.09001 * 113.47928 * 106.52614 * 23 12 10 40 40 H 1.09007 * 109.56667 * 65.81381 * 24 10 9 41 41 H 1.09004 * 109.57129 * 186.16514 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0019 1.3884 0.0000 4 1 1.4741 2.0328 0.7029 5 6 1.8355 1.8592 -1.4632 6 6 1.8355 0.5618 -2.2983 7 6 2.0019 -0.5751 -1.2637 8 1 1.4829 -1.4851 -1.5645 9 6 3.5074 -0.8078 -1.0590 10 6 4.1937 0.5445 -0.8463 11 1 5.2424 0.3837 -0.5963 12 7 4.1025 1.3380 -2.0791 13 6 5.0276 2.4859 -2.0385 14 6 5.3633 2.1963 -3.5082 15 6 6.8232 2.3490 -3.8493 16 1 7.4770 1.4898 -3.8213 17 6 7.3242 3.5855 -4.1972 18 7 6.5282 4.6318 -4.2309 19 14 9.1340 3.7749 -4.6194 20 1 9.8092 2.4571 -4.5066 21 1 9.2677 4.2818 -6.0088 22 1 9.7637 4.7362 -3.6790 23 6 4.9500 0.7642 -3.1409 24 6 3.5075 1.2983 0.2965 25 1 -0.3634 -1.0228 -0.0990 26 1 -0.3633 0.4256 0.9354 27 1 -0.3634 0.5973 -0.8363 28 1 2.6701 2.4972 -1.7536 29 1 0.8910 2.3893 -1.5860 30 1 2.6702 0.5619 -2.9993 31 1 0.8919 0.4530 -2.8330 32 1 3.9248 -1.2944 -1.9406 33 1 3.6655 -1.4390 -0.1845 34 1 4.5267 3.4422 -1.8878 35 1 5.8711 2.3402 -1.3636 36 1 4.6990 2.6833 -4.2220 37 1 6.8807 5.5017 -4.4753 38 1 5.7728 0.1589 -2.7602 39 1 4.3834 0.2612 -3.9245 40 1 3.6638 0.7626 1.2329 41 1 3.9249 2.3023 0.3742 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169125882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:19 Heat of formation + Delta-G solvation = 60.541396 kcal Electronic energy + Delta-G solvation = -19981.251931 eV Core-core repulsion = 17283.574377 eV Total energy + Delta-G solvation = -2697.677554 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.44639 -39.63126 -35.03051 -33.79554 -32.28624 -31.55810 -29.49534 -26.89851 -26.58476 -25.30160 -24.90336 -22.48454 -21.06885 -20.55906 -19.71682 -18.35146 -17.65862 -17.10441 -16.43241 -15.61159 -15.20462 -15.15448 -14.98319 -14.77123 -13.98352 -13.84026 -13.64784 -13.40869 -13.32045 -13.09468 -12.88789 -12.87210 -12.73924 -12.47993 -12.28397 -11.86943 -11.82713 -11.55867 -11.15388 -11.04519 -10.96318 -10.86931 -10.71555 -10.45828 -9.36825 -9.23008 -8.14402 -6.24846 1.40503 1.42909 1.53866 2.42463 3.10902 3.15384 3.34486 3.77403 3.84676 4.10417 4.16800 4.29301 4.29953 4.35535 4.49819 4.52215 4.58427 4.62464 4.63900 4.73072 4.74246 4.85188 4.93706 4.96988 5.03649 5.06520 5.10776 5.21933 5.25717 5.28125 5.29588 5.34993 5.57181 5.63627 5.71589 5.82603 5.89803 6.09866 6.26952 6.33384 6.46545 6.84813 7.43531 8.95137 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.047669 B = 0.005710 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.237289 B = 4902.363663 C = 4991.436856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.514 5.514 3 C 0.070 3.930 4 H 0.091 0.909 5 C -0.138 4.138 6 C -0.137 4.137 7 C 0.069 3.931 8 H 0.098 0.902 9 C -0.092 4.092 10 C 0.046 3.954 11 H 0.035 0.965 12 N -0.440 5.440 13 C 0.014 3.986 14 C 0.023 3.977 15 C -0.528 4.528 16 H 0.056 0.944 17 C 0.016 3.984 18 N -0.922 5.922 19 Si 0.954 3.046 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.005 3.995 24 C -0.092 4.092 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.023 0.977 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.029 0.971 37 H 0.262 0.738 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.332 -9.269 8.056 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.236 5.236 3 C -0.039 4.039 4 H 0.109 0.891 5 C -0.177 4.177 6 C -0.176 4.176 7 C -0.039 4.039 8 H 0.116 0.884 9 C -0.130 4.130 10 C -0.063 4.063 11 H 0.053 0.947 12 N -0.163 5.163 13 C -0.115 4.115 14 C 0.004 3.996 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.183 4.183 18 N -0.561 5.561 19 Si 0.780 3.220 20 H -0.189 1.189 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.123 4.123 24 C -0.130 4.130 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.042 0.958 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.108 0.892 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.907 -9.338 8.460 16.029 hybrid contribution 1.504 0.977 -0.886 2.000 sum -8.403 -8.361 7.574 14.067 Atomic orbital electron populations 1.22456 0.87810 1.02098 1.00981 1.65458 1.08519 1.15367 1.34292 1.22920 0.94989 0.89762 0.96211 0.89059 1.22986 1.00398 0.98954 0.95330 1.23000 1.00785 0.94380 0.99396 1.22963 0.95143 0.97376 0.88460 0.88439 1.21657 0.94397 0.95027 1.01911 1.22267 0.97444 0.94858 0.91773 0.94732 1.69799 1.36122 1.05237 1.05162 1.23727 0.93193 0.94433 1.00148 1.20008 0.94951 0.92146 0.92511 1.21414 0.94788 0.94217 1.46166 0.92591 1.25774 1.01781 0.95807 0.94938 1.70090 1.36796 1.00074 1.49107 0.85570 0.80462 0.78268 0.77744 1.18933 1.20636 1.20731 1.23834 0.94884 0.97934 0.95658 1.21613 0.94490 0.99568 0.97359 0.90636 0.90907 0.95810 0.89720 0.94537 0.89168 0.94186 0.91682 0.90400 0.93660 0.93927 0.95286 0.92954 0.92703 0.90983 0.90394 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.45 127.69 1.21 1.52 16 2 N -0.51 -12.84 5.29 -853.46 -4.51 -17.35 16 3 C 0.07 1.91 3.68 45.35 0.17 2.08 16 4 H 0.09 2.31 8.10 -2.39 -0.02 2.29 16 5 C -0.14 -4.29 5.23 31.58 0.17 -4.13 16 6 C -0.14 -4.06 5.27 31.58 0.17 -3.90 16 7 C 0.07 1.78 3.67 45.35 0.17 1.94 16 8 H 0.10 2.21 8.11 -2.39 -0.02 2.19 16 9 C -0.09 -2.47 5.30 30.88 0.16 -2.31 16 10 C 0.05 1.44 1.86 45.00 0.08 1.52 16 11 H 0.03 1.17 7.55 -2.39 -0.02 1.15 16 12 N -0.44 -16.11 0.89 -901.99 -0.80 -16.91 16 13 C 0.01 0.62 5.87 83.57 0.49 1.11 16 14 C 0.02 1.13 3.77 -11.20 -0.04 1.09 16 15 C -0.53 -28.61 8.82 25.60 0.23 -28.38 16 16 H 0.06 2.97 7.81 -2.91 -0.02 2.95 16 17 C 0.02 0.89 5.46 84.65 0.46 1.36 16 18 N -0.92 -53.79 13.26 21.45 0.28 -53.50 16 19 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 C 0.01 0.20 5.55 83.57 0.46 0.67 16 24 C -0.09 -2.68 5.34 30.88 0.16 -2.51 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.02 0.52 6.88 -2.39 -0.02 0.50 16 28 H 0.08 3.16 4.61 -2.39 -0.01 3.15 16 29 H 0.04 1.09 8.01 -2.38 -0.02 1.08 16 30 H 0.09 3.07 4.23 -2.39 -0.01 3.06 16 31 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 32 H 0.06 1.75 7.35 -2.38 -0.02 1.73 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 2.15 7.67 -2.39 -0.02 2.13 16 35 H 0.04 1.95 7.65 -2.38 -0.02 1.94 16 36 H 0.03 1.62 8.11 -2.39 -0.02 1.60 16 37 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.05 2.17 7.73 -2.38 -0.02 2.15 16 39 H 0.07 2.69 7.43 -2.39 -0.02 2.67 16 40 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.05 1.68 7.53 -2.38 -0.02 1.67 16 Total: -1.00 -57.17 297.34 1.87 -55.30 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.99 Total: 17.22 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 3.88 Total: -29.93 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -5.03 Total: -87.77 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -57.17 1.87 -55.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169125882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.840 kcal (2) G-P(sol) polarization free energy of solvation -57.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds