Wall clock time and date at job start Mon Mar 30 2020 18:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37099 * 120.00144 * 2 1 4 4 H 1.08003 * 119.99704 * 202.40211 * 3 2 1 5 5 C 1.38949 * 120.00134 * 22.40366 * 3 2 1 6 6 N 1.31411 * 119.99868 * 11.60297 * 5 3 2 7 7 Si 1.86798 * 119.99844 * 191.61093 * 5 3 2 8 8 H 1.48495 * 109.47352 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.46930 * 119.99706 * 7 5 3 10 10 H 1.48500 * 109.46985 * 239.99750 * 7 5 3 11 11 C 1.34776 * 119.99465 * 179.97438 * 2 1 3 12 12 O 1.21298 * 119.99703 * 179.97438 * 11 2 1 13 13 C 1.50693 * 120.00647 * 0.02562 * 11 2 1 14 14 C 1.50698 * 109.47827 * 179.97438 * 13 11 2 15 15 C 1.38305 * 119.91644 * 89.99809 * 14 13 11 16 16 C 1.38080 * 120.07740 * 179.97438 * 15 14 13 17 17 C 1.38970 * 119.92189 * 0.02579 * 16 15 14 18 18 S 1.76199 * 120.08199 * 180.02562 * 17 16 15 19 19 C 1.38978 * 119.84059 * 0.27252 * 17 16 15 20 20 C 1.38080 * 119.91591 * 359.44887 * 19 17 16 21 21 H 1.08992 * 109.47109 * 272.15798 * 1 2 3 22 22 H 1.09000 * 109.46826 * 32.15591 * 1 2 3 23 23 H 1.08996 * 109.47330 * 152.15177 * 1 2 3 24 24 H 0.97003 * 119.99825 * 180.02562 * 6 5 3 25 25 H 1.09007 * 109.47167 * 59.99293 * 13 11 2 26 26 H 1.09000 * 109.47293 * 300.00332 * 13 11 2 27 27 H 1.07997 * 119.95762 * 0.02562 * 15 14 13 28 28 H 1.08007 * 120.03832 * 180.02562 * 16 15 14 29 29 H 1.34506 * 103.00084 * 89.99718 * 18 17 16 30 30 H 1.07999 * 120.04033 * 179.72781 * 19 17 16 31 31 H 1.08002 * 119.95978 * 180.27217 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1695 1.2225 -0.3565 5 6 1.5345 2.3452 0.4586 6 7 0.3897 2.2708 1.0996 7 14 2.3336 4.0078 0.1639 8 1 3.6081 3.8205 -0.5748 9 1 1.4187 4.8619 -0.6353 10 1 2.6094 4.6625 1.4679 11 6 2.1388 -1.1673 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3854 -2.4723 0.0005 14 6 2.3645 -3.6178 0.0005 15 6 2.8128 -4.1421 1.1993 16 6 3.7095 -5.1921 1.2032 17 6 4.1621 -5.7216 0.0006 18 16 5.3059 -7.0619 0.0007 19 6 3.7143 -5.1881 -1.2020 20 6 2.8131 -4.1420 -1.1982 21 1 -0.3633 0.0387 1.0269 22 1 -0.3633 0.8700 -0.5470 23 1 -0.3634 -0.9086 -0.4800 24 1 -0.0405 3.0792 1.4194 25 1 0.7589 -2.5302 -0.8897 26 1 0.7583 -2.5299 0.8902 27 1 2.4603 -3.7304 2.1334 28 1 4.0588 -5.6013 2.1397 29 1 4.5055 -8.1428 0.0002 30 1 4.0673 -5.5943 -2.1384 31 1 2.4613 -3.7298 -2.1324 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183190348.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:20 Heat of formation + Delta-G solvation = -18.526022 kcal Electronic energy + Delta-G solvation = -15690.411281 eV Core-core repulsion = 13062.673127 eV Total energy + Delta-G solvation = -2627.738154 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 251.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81308 -39.57261 -36.63988 -34.01298 -33.34616 -31.97416 -29.20476 -27.84020 -26.09315 -23.70061 -23.01107 -20.61727 -19.12310 -18.86678 -17.87581 -17.14082 -16.74012 -16.45011 -16.21052 -15.72553 -15.61473 -14.62137 -14.40235 -14.15067 -13.87198 -13.70864 -13.30996 -13.06121 -12.86395 -12.70385 -12.53429 -12.21731 -12.11732 -12.00152 -11.64070 -11.01365 -10.40744 -9.91093 -9.67261 -9.63695 -9.17912 -8.31865 -5.97123 -0.04528 0.44167 0.69975 1.36058 1.41428 1.54888 1.83439 2.05099 2.28534 2.68904 3.10564 3.22918 3.79512 3.84783 4.05412 4.20240 4.33051 4.44331 4.60180 4.65122 4.71528 4.86413 5.06297 5.09137 5.28773 5.30335 5.42643 5.46007 5.63587 5.90918 6.11628 6.50079 7.18991 7.49702 8.05730 8.69592 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.047355 B = 0.004467 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.138523 B = 6266.562935 C = 6498.640704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.466 5.466 3 C -0.342 4.342 4 H 0.069 0.931 5 C -0.002 4.002 6 N -0.897 5.897 7 Si 0.987 3.013 8 H -0.275 1.275 9 H -0.265 1.265 10 H -0.276 1.276 11 C 0.442 3.558 12 O -0.628 6.628 13 C -0.089 4.089 14 C -0.037 4.037 15 C -0.128 4.128 16 C -0.076 4.076 17 C -0.129 4.129 18 S -0.133 6.133 19 C -0.075 4.075 20 C -0.125 4.125 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.273 0.727 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.131 0.869 28 H 0.149 0.851 29 H 0.085 0.915 30 H 0.151 0.849 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.011 -13.907 -2.294 14.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.185 5.185 3 C -0.470 4.470 4 H 0.087 0.913 5 C -0.203 4.203 6 N -0.536 5.536 7 Si 0.810 3.190 8 H -0.200 1.200 9 H -0.190 1.190 10 H -0.202 1.202 11 C 0.231 3.769 12 O -0.515 6.515 13 C -0.128 4.128 14 C -0.037 4.037 15 C -0.147 4.147 16 C -0.096 4.096 17 C -0.241 4.241 18 S 0.024 5.976 19 C -0.095 4.095 20 C -0.145 4.145 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.136 0.864 26 H 0.128 0.872 27 H 0.149 0.851 28 H 0.166 0.834 29 H 0.049 0.951 30 H 0.169 0.831 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.176 -14.312 -2.210 14.482 hybrid contribution -1.063 1.178 0.103 1.590 sum -0.888 -13.133 -2.107 13.331 Atomic orbital electron populations 1.21486 0.79175 1.00347 1.01282 1.43879 1.06860 1.04593 1.63166 1.19626 0.99127 0.85908 1.42387 0.91316 1.26030 0.97003 1.02684 0.94610 1.70069 1.17845 1.30254 1.35426 0.84977 0.78301 0.77484 0.78193 1.20020 1.18974 1.20169 1.20857 0.87908 0.85889 0.82210 1.90515 1.16127 1.87967 1.56911 1.20652 0.97176 0.88849 1.06149 1.19795 0.96019 0.93797 0.94130 1.21231 0.98476 0.96901 0.98135 1.21701 0.94620 0.95287 0.98001 1.21303 1.04367 1.02289 0.96111 1.85925 1.12275 1.00705 1.98696 1.21722 0.94560 0.95284 0.97944 1.21245 0.98299 0.96846 0.98081 0.93489 0.93028 0.90857 0.91764 0.86429 0.87161 0.85061 0.83359 0.95073 0.83134 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.09 8.52 127.77 1.09 6.18 16 2 N -0.47 -23.69 3.02 -658.90 -1.99 -25.68 16 3 C -0.34 -19.50 9.29 84.04 0.78 -18.72 16 4 H 0.07 4.23 7.41 -2.91 -0.02 4.21 16 5 C 0.00 -0.09 5.11 84.93 0.43 0.34 16 6 N -0.90 -47.11 10.62 21.66 0.23 -46.88 16 7 Si 0.99 42.58 29.57 68.60 2.03 44.61 16 8 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 9 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 10 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 11 C 0.44 21.09 7.62 87.65 0.67 21.76 16 12 O -0.63 -35.48 15.73 -3.08 -0.05 -35.53 16 13 C -0.09 -2.96 4.35 29.10 0.13 -2.84 16 14 C -0.04 -1.19 4.38 -19.83 -0.09 -1.28 16 15 C -0.13 -3.91 9.69 22.25 0.22 -3.69 16 16 C -0.08 -2.07 9.79 22.41 0.22 -1.86 16 17 C -0.13 -3.47 6.11 22.62 0.14 -3.33 16 18 S -0.13 -3.01 25.78 -56.49 -1.46 -4.46 16 19 C -0.07 -1.99 9.79 22.41 0.22 -1.78 16 20 C -0.12 -3.69 9.69 22.25 0.22 -3.47 16 21 H 0.05 2.07 7.54 -2.39 -0.02 2.05 16 22 H 0.05 2.34 7.06 -2.39 -0.02 2.32 16 23 H 0.07 2.36 6.36 -2.39 -0.02 2.35 16 24 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 25 H 0.12 3.22 7.35 -2.38 -0.02 3.21 16 26 H 0.11 3.25 8.05 -2.39 -0.02 3.23 16 27 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 28 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.09 1.62 9.07 73.35 0.67 2.29 16 30 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -67.46 283.75 4.60 -62.86 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 1.81 Total: 13.78 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.02 Total: -8.69 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -1.76 Total: -72.56 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.05 Total: -35.53 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -1.46 Total: -4.46 kcal Total: -67.46 4.60 -62.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183190348.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.331 kcal (2) G-P(sol) polarization free energy of solvation -67.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds