Wall clock time and date at job start Mon Mar 30 2020 18:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46084 * 2 1 4 4 C 1.53046 * 109.44674 * 240.03255 * 2 1 3 5 5 C 1.53191 * 109.30817 * 178.62120 * 4 2 1 6 6 N 1.46921 * 108.77995 * 54.63707 * 5 4 2 7 7 S 1.65597 * 120.63143 * 126.40816 * 6 5 4 8 8 O 1.42093 * 106.40383 * 23.52084 * 7 6 5 9 9 O 1.42099 * 106.40404 * 156.44177 * 7 6 5 10 10 C 1.76208 * 107.21890 * 269.97822 * 7 6 5 11 11 H 1.07991 * 119.99738 * 0.02562 * 10 7 6 12 12 C 1.37877 * 119.99930 * 180.02562 * 10 7 6 13 13 N 1.31515 * 119.99999 * 180.02562 * 12 10 7 14 14 Si 1.86800 * 120.00051 * 359.97438 * 12 10 7 15 15 H 1.48503 * 109.47028 * 90.00273 * 14 12 10 16 16 H 1.48500 * 109.47453 * 210.00177 * 14 12 10 17 17 H 1.48500 * 109.47464 * 330.00324 * 14 12 10 18 18 C 1.46928 * 118.73681 * 306.39154 * 6 5 4 19 19 C 1.53046 * 109.45877 * 119.97312 * 2 1 3 20 20 H 1.08993 * 109.49507 * 61.42165 * 19 2 1 21 21 F 1.39897 * 109.49569 * 301.31798 * 19 2 1 22 22 H 1.08994 * 109.46608 * 299.99850 * 1 2 3 23 23 H 1.08995 * 109.46659 * 60.00108 * 1 2 3 24 24 H 1.09002 * 109.46537 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.49714 * 298.57106 * 4 2 1 26 26 H 1.09001 * 109.49646 * 58.67172 * 4 2 1 27 27 H 1.08995 * 109.59092 * 294.84342 * 5 4 2 28 28 H 1.09003 * 109.70005 * 174.49325 * 5 4 2 29 29 H 0.97004 * 119.99795 * 179.97438 * 13 12 10 30 30 H 1.09003 * 109.58359 * 293.81380 * 18 6 5 31 31 H 1.09000 * 109.70469 * 173.46454 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2502 5 6 3.5711 -0.6889 -1.2645 6 7 4.0677 -1.2493 -0.0004 7 16 5.1661 -2.4885 -0.0006 8 8 5.8394 -2.4278 -1.2504 9 8 5.8401 -2.4276 1.2489 10 6 4.2526 -3.9953 -0.0001 11 1 3.1729 -3.9721 -0.0002 12 6 4.9163 -5.2039 0.0003 13 7 4.2344 -6.3285 0.0002 14 14 6.7838 -5.2439 -0.0002 15 1 7.2792 -5.2538 1.3997 16 1 7.2526 -6.4670 -0.6998 17 1 7.3046 -4.0426 -0.7010 18 6 3.5714 -0.6890 1.2640 19 6 2.0399 -0.7209 1.2500 20 1 1.6977 -1.7557 1.2382 21 9 1.5491 -0.0790 2.3921 22 1 -0.3632 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 1.6974 -1.7557 -1.2384 26 1 1.6570 -0.2207 -2.1399 27 1 3.9143 0.3404 -1.3677 28 1 3.9433 -1.2835 -2.0989 29 1 4.7014 -7.1787 0.0001 30 1 3.9147 0.3404 1.3670 31 1 3.9417 -1.2830 2.0996 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192950746.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:28 Heat of formation + Delta-G solvation = -163.829943 kcal Electronic energy + Delta-G solvation = -17719.718608 eV Core-core repulsion = 14654.910378 eV Total energy + Delta-G solvation = -3064.808230 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.66183 -39.31255 -37.79154 -36.53380 -35.21885 -34.60685 -31.56198 -28.66297 -28.52329 -24.25657 -23.75717 -21.63891 -20.42337 -19.48210 -18.71273 -17.28972 -17.21027 -16.87038 -16.43395 -16.16924 -15.61162 -15.35688 -15.00595 -14.78669 -14.42071 -13.87307 -13.75395 -13.53155 -13.39320 -13.22540 -12.96045 -12.72389 -12.67262 -12.51203 -12.14092 -11.96930 -11.73866 -11.52510 -11.35395 -11.22865 -11.09066 -9.89270 -8.97844 -7.53510 0.03590 1.03587 1.12708 1.19737 1.87413 2.33581 2.41318 3.30852 3.46481 3.51706 3.64800 3.83864 3.98734 4.14418 4.21113 4.40585 4.48308 4.64379 4.68095 4.80343 4.84806 4.90444 5.01518 5.08798 5.22468 5.35894 5.40326 5.45803 5.76983 6.00588 6.52717 8.19668 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.032835 B = 0.008373 C = 0.008201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.550187 B = 3343.145879 C = 3413.202538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.099 0.901 4 C -0.124 4.124 5 C 0.109 3.891 6 N -0.995 5.995 7 S 2.694 3.306 8 O -1.020 7.020 9 O -1.027 7.027 10 C -1.035 5.035 11 H 0.106 0.894 12 C 0.109 3.891 13 N -0.853 5.853 14 Si 0.822 3.178 15 H -0.241 1.241 16 H -0.219 1.219 17 H -0.227 1.227 18 C 0.098 3.902 19 C 0.079 3.921 20 H 0.077 0.923 21 F -0.213 7.213 22 H 0.059 0.941 23 H 0.081 0.919 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.114 0.886 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.291 0.709 30 H 0.100 0.900 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 12.201 -1.758 13.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.118 0.882 4 C -0.163 4.163 5 C -0.015 4.015 6 N -0.833 5.833 7 S 2.796 3.204 8 O -1.010 7.010 9 O -1.017 7.017 10 C -1.167 5.167 11 H 0.124 0.876 12 C -0.108 4.108 13 N -0.483 5.483 14 Si 0.639 3.361 15 H -0.165 1.165 16 H -0.142 1.142 17 H -0.150 1.150 18 C -0.029 4.029 19 C 0.041 3.959 20 H 0.095 0.905 21 F -0.194 7.194 22 H 0.078 0.922 23 H 0.100 0.900 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.132 0.868 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.760 12.131 -1.746 13.147 hybrid contribution 0.010 -1.105 0.319 1.151 sum -4.750 11.025 -1.426 12.089 Atomic orbital electron populations 1.21801 0.93070 1.02205 1.03137 1.21659 0.97629 1.00692 0.92653 0.88241 1.21994 0.94118 1.01480 0.98745 1.21730 0.95237 1.00629 0.83916 1.57336 1.62537 1.51485 1.11960 1.00717 0.73246 0.74121 0.72359 1.93426 1.73916 1.88016 1.45635 1.93370 1.74324 1.87939 1.46116 1.31029 1.08220 1.11290 1.66201 0.87625 1.25153 1.02210 0.94764 0.88655 1.70012 1.38876 0.98987 1.40414 0.87531 0.81504 0.84512 0.82520 1.16481 1.14156 1.14969 1.21933 0.93510 1.01669 0.85742 1.22030 0.93706 0.97132 0.83040 0.90540 1.92765 1.89066 1.84138 1.53445 0.92185 0.90017 0.93160 0.92354 0.86789 0.88614 0.89792 0.89864 0.88141 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.06 71.98 0.65 -2.11 16 2 C -0.11 -2.39 2.49 -10.76 -0.03 -2.42 16 3 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 4 C -0.12 -2.92 5.36 30.67 0.16 -2.76 16 5 C 0.11 3.16 6.38 86.36 0.55 3.71 16 6 N -0.99 -36.71 3.29 -513.07 -1.69 -38.40 16 7 S 2.69 131.96 4.19 -56.49 -0.24 131.72 16 8 O -1.02 -52.74 14.73 -128.00 -1.89 -54.63 16 9 O -1.03 -53.96 15.55 -128.00 -1.99 -55.95 16 10 C -1.03 -57.48 10.29 67.73 0.70 -56.78 16 11 H 0.11 5.99 8.06 -2.92 -0.02 5.97 16 12 C 0.11 6.23 5.47 84.65 0.46 6.69 16 13 N -0.85 -49.12 13.96 21.45 0.30 -48.82 16 14 Si 0.82 40.89 26.54 68.60 1.82 42.71 16 15 H -0.24 -11.72 7.11 99.48 0.71 -11.02 16 16 H -0.22 -9.61 7.11 99.48 0.71 -8.90 16 17 H -0.23 -11.55 5.61 99.48 0.56 -10.99 16 18 C 0.10 3.16 6.11 86.36 0.53 3.69 16 19 C 0.08 2.27 3.45 30.67 0.11 2.37 16 20 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 21 F -0.21 -6.19 16.52 44.97 0.74 -5.45 16 22 H 0.06 1.14 7.77 -2.39 -0.02 1.13 16 23 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.66 7.12 -2.39 -0.02 2.65 16 29 H 0.29 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.08 3.01 7.13 -2.39 -0.02 2.99 16 Total: -1.00 -66.70 266.72 1.17 -65.54 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.97 Total: 10.88 kcal Atomic # 6 Polarization: -50.74 SS G_CDS: 3.13 Total: -47.60 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -1.39 Total: -87.21 kcal Atomic # 8 Polarization: -106.70 SS G_CDS: -3.88 Total: -110.58 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.74 Total: -5.45 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.82 Total: 42.71 kcal Atomic # 16 Polarization: 131.96 SS G_CDS: -0.24 Total: 131.72 kcal Total: -66.70 1.17 -65.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192950746.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.294 kcal (2) G-P(sol) polarization free energy of solvation -66.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds