Wall clock time and date at job start Mon Mar 30 2020 18:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.88559 * 2 1 4 4 C 1.55157 * 111.03596 * 123.90552 * 2 1 3 5 5 C 1.54323 * 102.94202 * 153.58729 * 4 2 1 6 6 H 1.09003 * 110.00985 * 97.29751 * 5 4 2 7 7 C 1.52997 * 109.88623 * 218.39173 * 5 4 2 8 8 F 1.39901 * 109.47234 * 179.26694 * 7 5 4 9 9 N 1.47024 * 107.27380 * 337.81213 * 5 4 2 10 10 S 1.65595 * 125.65335 * 178.90260 * 9 5 4 11 11 O 1.42095 * 106.40610 * 203.54013 * 10 9 5 12 12 O 1.42103 * 106.40198 * 336.45914 * 10 9 5 13 13 C 1.76202 * 107.21825 * 89.99557 * 10 9 5 14 14 H 1.07999 * 119.99765 * 0.02562 * 13 10 9 15 15 C 1.37873 * 119.99802 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00301 * 359.97438 * 15 13 10 17 17 Si 1.86807 * 119.99875 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.46881 * 89.99690 * 17 15 13 19 19 H 1.48494 * 109.47003 * 209.99726 * 17 15 13 20 20 H 1.48500 * 109.46895 * 329.99699 * 17 15 13 21 21 C 1.47429 * 108.70036 * 358.93440 * 9 5 4 22 22 H 1.08991 * 109.47395 * 182.42327 * 1 2 3 23 23 H 1.09004 * 109.46964 * 302.42531 * 1 2 3 24 24 H 1.09001 * 109.46943 * 62.42193 * 1 2 3 25 25 H 1.09004 * 110.71849 * 35.22814 * 4 2 1 26 26 H 1.08994 * 110.72284 * 271.95585 * 4 2 1 27 27 H 1.09002 * 109.47153 * 59.26271 * 7 5 4 28 28 H 1.09001 * 109.46832 * 299.26462 * 7 5 4 29 29 H 0.96998 * 120.00306 * 180.02562 * 16 15 13 30 30 H 1.09003 * 110.36245 * 142.96680 * 21 9 5 31 31 H 1.08992 * 110.36760 * 265.29336 * 21 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0869 -0.8078 1.2019 5 6 3.4683 -1.2733 0.6951 6 1 4.2451 -0.6007 1.0588 7 6 3.7465 -2.6983 1.1777 8 9 4.9927 -3.1175 0.6998 9 7 3.4275 -1.2420 -0.7742 10 16 4.6817 -1.6309 -1.7831 11 8 4.4301 -0.9634 -3.0120 12 8 5.8732 -1.4500 -1.0302 13 6 4.5637 -3.3563 -2.1207 14 1 3.7663 -3.9387 -1.6835 15 6 5.4895 -3.9626 -2.9431 16 7 6.4602 -3.2532 -3.4759 17 14 5.3640 -5.7917 -3.3016 18 1 4.5230 -6.0032 -4.5071 19 1 6.7216 -6.3432 -3.5421 20 1 4.7476 -6.4825 -2.1406 21 6 2.0852 -0.8062 -1.2006 22 1 -0.3634 -1.0266 0.0434 23 1 -0.3633 0.5511 0.8675 24 1 -0.3633 0.4758 -0.9109 25 1 1.4480 -1.6635 1.4207 26 1 2.1929 -0.1700 2.0794 27 1 2.9705 -3.3665 0.8041 28 1 3.7497 -2.7187 2.2675 29 1 7.1113 -3.6797 -4.0548 30 1 2.1554 -0.1713 -2.0839 31 1 1.4522 -1.6702 -1.4027 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951728.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:41 Heat of formation + Delta-G solvation = -145.484721 kcal Electronic energy + Delta-G solvation = -17928.339571 eV Core-core repulsion = 14864.326850 eV Total energy + Delta-G solvation = -3064.012721 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.74999 -38.45564 -35.10422 -33.82778 -32.98145 -32.33576 -30.34458 -26.35344 -25.96218 -24.71311 -20.94242 -20.16574 -18.51541 -17.63227 -16.16080 -16.06444 -15.13160 -14.92885 -14.77921 -14.29861 -13.77218 -13.65426 -13.22623 -13.01661 -12.65446 -12.36196 -12.02959 -11.87676 -11.37054 -11.14601 -11.10458 -10.78401 -10.57784 -10.52376 -10.38218 -10.27829 -10.19853 -10.13217 -9.97855 -9.13196 -8.80991 -8.14335 -6.58016 -5.15759 2.31964 3.13236 3.19155 3.26356 4.13924 4.46800 4.64123 4.76275 4.82337 4.98978 5.26858 5.36819 5.42330 5.50845 5.63044 5.65965 5.75622 5.85218 5.98205 6.00210 6.07419 6.15741 6.25336 6.34044 6.46768 6.53047 6.92443 7.44243 7.55642 8.09076 9.01364 10.36284 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.029018 B = 0.009251 C = 0.008793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.674268 B = 3026.048425 C = 3183.734260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 H 0.082 0.918 4 C -0.118 4.118 5 C 0.123 3.877 6 H 0.082 0.918 7 C 0.042 3.958 8 F -0.187 7.187 9 N -1.017 6.017 10 S 2.724 3.276 11 O -1.007 7.007 12 O -0.989 6.989 13 C -1.003 5.003 14 H 0.098 0.902 15 C 0.134 3.866 16 N -0.850 5.850 17 Si 0.919 3.081 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.263 1.263 21 C 0.123 3.877 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.289 0.711 30 H 0.078 0.922 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.925 2.488 8.943 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 H 0.101 0.899 4 C -0.156 4.156 5 C 0.015 3.985 6 H 0.100 0.900 7 C -0.015 4.015 8 F -0.168 7.168 9 N -0.851 5.851 10 S 2.826 3.174 11 O -0.998 6.998 12 O -0.980 6.980 13 C -1.137 5.137 14 H 0.116 0.884 15 C -0.083 4.083 16 N -0.481 5.481 17 Si 0.743 3.257 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.187 1.187 21 C -0.003 4.003 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.007 3.116 8.441 13.458 hybrid contribution -0.222 -1.636 -0.168 1.659 sum -10.229 1.481 8.273 13.239 Atomic orbital electron populations 1.21695 0.94265 1.02017 1.01758 1.22380 0.95565 0.99572 0.95000 0.89928 1.22671 0.94934 1.00047 0.97979 1.21768 0.98483 0.96008 0.82228 0.89970 1.22502 0.83942 0.96196 0.98862 1.92985 1.42918 1.91165 1.89760 1.59361 1.26860 1.84217 1.14647 1.00271 0.69998 0.76288 0.70809 1.93346 1.84871 1.77605 1.43949 1.93367 1.43892 1.88431 1.72302 1.30494 1.22030 1.19808 1.41359 0.88372 1.24702 0.91818 1.00746 0.91053 1.69894 1.12745 1.38204 1.27230 0.86199 0.78296 0.81926 0.79285 1.19393 1.20052 1.18738 1.21925 0.83716 0.97601 0.97082 0.92385 0.92585 0.92304 0.90506 0.90397 0.90847 0.90894 0.90084 0.90355 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.30 37.16 0.35 -0.99 16 2 C -0.11 -1.32 3.64 -88.47 -0.32 -1.64 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.12 -1.40 5.95 -24.90 -0.15 -1.54 16 5 C 0.12 2.09 3.28 -66.95 -0.22 1.87 16 6 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 7 C 0.04 0.70 7.03 37.16 0.26 0.96 16 8 F -0.19 -4.34 13.56 2.25 0.03 -4.31 16 9 N -1.02 -21.30 3.40 -104.42 -0.35 -21.65 16 10 S 2.72 75.96 4.45 -107.50 -0.48 75.48 16 11 O -1.01 -30.66 17.34 -57.17 -0.99 -31.65 16 12 O -0.99 -30.16 16.05 -57.17 -0.92 -31.08 16 13 C -1.00 -28.65 8.54 30.60 0.26 -28.39 16 14 H 0.10 2.59 7.81 -52.49 -0.41 2.18 16 15 C 0.13 3.88 5.46 -17.82 -0.10 3.78 16 16 N -0.85 -25.97 13.19 55.43 0.73 -25.24 16 17 Si 0.92 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 21 C 0.12 2.08 6.57 -2.53 -0.02 2.06 16 22 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.79 7.72 -51.93 -0.40 0.39 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.29 7.94 8.31 -40.82 -0.34 7.60 16 30 H 0.08 1.39 7.78 -51.93 -0.40 0.98 16 31 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 LS Contribution 273.37 15.07 4.12 4.12 Total: -1.00 -36.72 273.37 -6.96 -43.68 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.15 Total: -1.88 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 0.06 Total: -23.89 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.38 Total: -46.89 kcal Atomic # 8 Polarization: -60.82 SS G_CDS: -1.91 Total: -62.73 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.03 Total: -4.31 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 75.96 SS G_CDS: -0.48 Total: 75.48 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -36.72 -6.96 -43.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951728.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.804 kcal (2) G-P(sol) polarization free energy of solvation -36.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds