Wall clock time and date at job start Mon Mar 30 2020 18:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.88559 * 2 1 4 4 C 1.55157 * 111.03596 * 123.90552 * 2 1 3 5 5 C 1.54323 * 102.94202 * 153.58729 * 4 2 1 6 6 H 1.09003 * 110.00985 * 97.29751 * 5 4 2 7 7 C 1.52997 * 109.88623 * 218.39173 * 5 4 2 8 8 F 1.39901 * 109.47234 * 179.26694 * 7 5 4 9 9 N 1.47024 * 107.27380 * 337.81213 * 5 4 2 10 10 S 1.65595 * 125.65335 * 178.90260 * 9 5 4 11 11 O 1.42095 * 106.40610 * 203.54013 * 10 9 5 12 12 O 1.42103 * 106.40198 * 336.45914 * 10 9 5 13 13 C 1.76202 * 107.21825 * 89.99557 * 10 9 5 14 14 H 1.07999 * 119.99765 * 0.02562 * 13 10 9 15 15 C 1.37873 * 119.99802 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00301 * 359.97438 * 15 13 10 17 17 Si 1.86807 * 119.99875 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.46881 * 89.99690 * 17 15 13 19 19 H 1.48494 * 109.47003 * 209.99726 * 17 15 13 20 20 H 1.48500 * 109.46895 * 329.99699 * 17 15 13 21 21 C 1.47429 * 108.70036 * 358.93440 * 9 5 4 22 22 H 1.08991 * 109.47395 * 182.42327 * 1 2 3 23 23 H 1.09004 * 109.46964 * 302.42531 * 1 2 3 24 24 H 1.09001 * 109.46943 * 62.42193 * 1 2 3 25 25 H 1.09004 * 110.71849 * 35.22814 * 4 2 1 26 26 H 1.08994 * 110.72284 * 271.95585 * 4 2 1 27 27 H 1.09002 * 109.47153 * 59.26271 * 7 5 4 28 28 H 1.09001 * 109.46832 * 299.26462 * 7 5 4 29 29 H 0.96998 * 120.00306 * 180.02562 * 16 15 13 30 30 H 1.09003 * 110.36245 * 142.96680 * 21 9 5 31 31 H 1.08992 * 110.36760 * 265.29336 * 21 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0869 -0.8078 1.2019 5 6 3.4683 -1.2733 0.6951 6 1 4.2451 -0.6007 1.0588 7 6 3.7465 -2.6983 1.1777 8 9 4.9927 -3.1175 0.6998 9 7 3.4275 -1.2420 -0.7742 10 16 4.6817 -1.6309 -1.7831 11 8 4.4301 -0.9634 -3.0120 12 8 5.8732 -1.4500 -1.0302 13 6 4.5637 -3.3563 -2.1207 14 1 3.7663 -3.9387 -1.6835 15 6 5.4895 -3.9626 -2.9431 16 7 6.4602 -3.2532 -3.4759 17 14 5.3640 -5.7917 -3.3016 18 1 4.5230 -6.0032 -4.5071 19 1 6.7216 -6.3432 -3.5421 20 1 4.7476 -6.4825 -2.1406 21 6 2.0852 -0.8062 -1.2006 22 1 -0.3634 -1.0266 0.0434 23 1 -0.3633 0.5511 0.8675 24 1 -0.3633 0.4758 -0.9109 25 1 1.4480 -1.6635 1.4207 26 1 2.1929 -0.1700 2.0794 27 1 2.9705 -3.3665 0.8041 28 1 3.7497 -2.7187 2.2675 29 1 7.1113 -3.6797 -4.0548 30 1 2.1554 -0.1713 -2.0839 31 1 1.4522 -1.6702 -1.4027 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951728.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:40 Heat of formation + Delta-G solvation = -174.278485 kcal Electronic energy + Delta-G solvation = -17929.588162 eV Core-core repulsion = 14864.326850 eV Total energy + Delta-G solvation = -3065.261313 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.32454 -39.70976 -37.37885 -36.10848 -35.15539 -33.49185 -31.70731 -28.24717 -27.27305 -26.03348 -22.37229 -21.21034 -20.58040 -19.35600 -18.26032 -17.48926 -17.06068 -16.48908 -16.12973 -16.00996 -15.71710 -15.46496 -14.42374 -14.31169 -14.06517 -13.81972 -13.49868 -13.25092 -13.15750 -13.00421 -12.58385 -12.47073 -12.37381 -12.32106 -12.04660 -11.88954 -11.59653 -11.47672 -11.40617 -11.22730 -10.94200 -9.78837 -8.71658 -7.41013 0.29438 1.30633 1.32827 1.48126 2.20635 2.60498 2.86367 3.50460 3.62334 3.68228 3.92817 4.12206 4.14624 4.24393 4.44512 4.52537 4.59056 4.67019 4.76583 4.82990 4.94366 5.08927 5.11554 5.22072 5.23789 5.40307 5.41341 5.56613 5.86489 5.93132 6.81150 8.24385 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.029018 B = 0.009251 C = 0.008793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.674268 B = 3026.048425 C = 3183.734260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 H 0.082 0.918 4 C -0.101 4.101 5 C 0.109 3.891 6 H 0.069 0.931 7 C 0.025 3.975 8 F -0.228 7.228 9 N -1.021 6.021 10 S 2.727 3.273 11 O -1.050 7.050 12 O -1.030 7.030 13 C -1.018 5.018 14 H 0.114 0.886 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.989 3.011 18 H -0.252 1.252 19 H -0.264 1.264 20 H -0.249 1.249 21 C 0.107 3.893 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.122 0.878 29 H 0.297 0.703 30 H 0.057 0.943 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.477 1.349 10.749 17.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 H 0.100 0.900 4 C -0.140 4.140 5 C 0.002 3.998 6 H 0.087 0.913 7 C -0.031 4.031 8 F -0.210 7.210 9 N -0.859 5.859 10 S 2.831 3.169 11 O -1.040 7.040 12 O -1.020 7.020 13 C -1.152 5.152 14 H 0.132 0.868 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.807 3.193 18 H -0.176 1.176 19 H -0.188 1.188 20 H -0.172 1.172 21 C -0.017 4.017 22 H 0.085 0.915 23 H 0.099 0.901 24 H 0.077 0.923 25 H 0.122 0.878 26 H 0.130 0.870 27 H 0.106 0.894 28 H 0.140 0.860 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.565 2.001 10.252 16.340 hybrid contribution 0.508 -1.192 -0.665 1.456 sum -12.057 0.810 9.588 15.426 Atomic orbital electron populations 1.21677 0.91396 1.03057 1.02979 1.22386 0.97658 0.98771 0.92805 0.89984 1.22730 0.91536 1.01347 0.98361 1.22193 1.01615 0.96376 0.79602 0.91311 1.22998 0.82170 0.96061 1.01869 1.92896 1.45890 1.91634 1.90551 1.58756 1.26937 1.83989 1.16260 0.99661 0.70483 0.76297 0.70501 1.93278 1.85779 1.78342 1.46612 1.93301 1.47019 1.88824 1.72886 1.30795 1.22537 1.20381 1.41461 0.86825 1.26015 0.91115 1.06727 0.90539 1.70000 1.14048 1.40825 1.28470 0.85153 0.79257 0.74780 0.80072 1.17631 1.18805 1.17183 1.22317 0.82070 0.98633 0.98719 0.91547 0.90132 0.92283 0.87850 0.87026 0.89419 0.86026 0.89335 0.92423 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.30 71.98 0.67 -1.33 16 2 C -0.10 -2.12 3.64 -9.40 -0.03 -2.16 16 3 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 4 C -0.10 -1.98 5.95 31.78 0.19 -1.79 16 5 C 0.11 3.53 3.28 45.34 0.15 3.68 16 6 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 7 C 0.02 0.78 7.03 71.98 0.51 1.29 16 8 F -0.23 -10.64 13.56 44.97 0.61 -10.03 16 9 N -1.02 -42.95 3.40 -484.26 -1.65 -44.60 16 10 S 2.73 157.58 4.45 -56.49 -0.25 157.33 16 11 O -1.05 -67.04 17.34 -128.00 -2.22 -69.26 16 12 O -1.03 -65.74 16.05 -128.00 -2.05 -67.80 16 13 C -1.02 -59.04 8.54 67.73 0.58 -58.46 16 14 H 0.11 5.97 7.81 -2.91 -0.02 5.95 16 15 C 0.07 3.96 5.46 84.65 0.46 4.42 16 16 N -0.90 -56.74 13.19 21.45 0.28 -56.46 16 17 Si 0.99 43.50 29.54 68.60 2.03 45.52 16 18 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 20 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 21 C 0.11 3.56 6.57 86.85 0.57 4.13 16 22 H 0.07 0.91 8.11 -2.39 -0.02 0.89 16 23 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.10 1.54 7.72 -2.39 -0.02 1.52 16 26 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.30 16.78 8.31 -92.71 -0.77 16.01 16 30 H 0.06 2.10 7.78 -2.39 -0.02 2.08 16 31 H 0.07 2.20 8.04 -2.39 -0.02 2.18 16 Total: -1.00 -84.77 273.37 0.96 -83.81 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.12 Total: 11.69 kcal Atomic # 6 Polarization: -53.31 SS G_CDS: 3.09 Total: -50.22 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -1.36 Total: -101.06 kcal Atomic # 8 Polarization: -132.78 SS G_CDS: -4.27 Total: -137.06 kcal Atomic # 9 Polarization: -10.64 SS G_CDS: 0.61 Total: -10.03 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 157.58 SS G_CDS: -0.25 Total: 157.33 kcal Total: -84.77 0.96 -83.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951728.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.468 kcal (2) G-P(sol) polarization free energy of solvation -84.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds