Wall clock time and date at job start Mon Mar 30 2020 18:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 110.88762 * 2 1 4 4 F 1.39901 * 109.47234 * 60.70101 * 3 2 1 5 5 C 1.55160 * 111.00398 * 236.11447 * 2 1 3 6 6 C 1.54324 * 102.94339 * 277.39358 * 5 2 1 7 7 N 1.47028 * 107.27241 * 337.80660 * 6 5 2 8 8 S 1.65597 * 125.64974 * 178.97275 * 7 6 5 9 9 O 1.42101 * 106.40272 * 203.51702 * 8 7 6 10 10 O 1.42100 * 106.40275 * 336.43895 * 8 7 6 11 11 C 1.76201 * 107.21636 * 89.97882 * 8 7 6 12 12 H 1.08003 * 120.00145 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00100 * 180.02562 * 11 8 7 14 14 N 1.31515 * 119.99526 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 119.99797 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47027 * 90.00107 * 15 13 11 17 17 H 1.48504 * 109.46857 * 209.99557 * 15 13 11 18 18 H 1.48500 * 109.47456 * 329.99879 * 15 13 11 19 19 C 1.47470 * 108.72211 * 358.97657 * 7 6 5 20 20 H 1.09007 * 109.46910 * 59.30144 * 1 2 3 21 21 H 1.09001 * 109.47155 * 179.29726 * 1 2 3 22 22 H 1.08995 * 109.47147 * 299.30276 * 1 2 3 23 23 H 1.09002 * 109.47153 * 300.69678 * 3 2 1 24 24 H 1.09001 * 109.46832 * 180.69869 * 3 2 1 25 25 H 1.09000 * 110.71735 * 35.75815 * 5 2 1 26 26 H 1.08999 * 110.71401 * 158.85139 * 5 2 1 27 27 H 1.08993 * 109.88404 * 97.22426 * 6 5 2 28 28 H 1.08994 * 109.88154 * 218.39079 * 6 5 2 29 29 H 0.97000 * 119.99118 * 180.02562 * 14 13 11 30 30 H 1.09002 * 110.35026 * 265.25126 * 19 7 6 31 31 H 1.09000 * 110.40677 * 142.91358 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 9 1.6387 2.0953 1.1503 5 6 2.0862 -0.8076 -1.2025 6 6 2.0294 -2.2644 -0.6964 7 7 2.0152 -2.2158 0.7730 8 16 1.9340 -3.5269 1.7813 9 8 1.4003 -3.0551 3.0109 10 8 1.3411 -4.5761 1.0283 11 6 3.5890 -4.0296 2.1175 12 1 4.4164 -3.4913 1.6793 13 6 3.8276 -5.1108 2.9392 14 7 2.8200 -5.7665 3.4723 15 14 5.5822 -5.6440 3.2950 16 1 6.0806 -4.9338 4.5001 17 1 5.6152 -7.1092 3.5350 18 1 6.4455 -5.3132 2.1329 19 6 2.0852 -0.8062 1.2007 20 1 -0.3633 0.5247 -0.8837 21 1 -0.3633 -1.0276 -0.0126 22 1 -0.3633 0.5029 0.8961 23 1 1.7149 1.9559 -0.8837 24 1 3.1651 1.4025 -0.0125 25 1 1.4520 -0.6790 -2.0797 26 1 3.1120 -0.5129 -1.4234 27 1 1.1229 -2.7481 -1.0600 28 1 2.9073 -2.8109 -1.0407 29 1 2.9880 -6.5269 4.0507 30 1 3.1179 -0.5224 1.4032 31 1 1.4667 -0.6458 2.0838 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951793.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:45 Heat of formation + Delta-G solvation = -150.982256 kcal Electronic energy + Delta-G solvation = -17451.484563 eV Core-core repulsion = 14387.233451 eV Total energy + Delta-G solvation = -3064.251112 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.54116 -38.66731 -35.22474 -33.94958 -33.11414 -32.48385 -29.14497 -27.07860 -26.12318 -25.34334 -21.78311 -19.25152 -18.73693 -17.48380 -16.32943 -16.03291 -15.64399 -15.54985 -14.90841 -14.31960 -14.09154 -13.83550 -13.52082 -13.03541 -12.74516 -12.14661 -12.08878 -11.85785 -11.76402 -11.23758 -11.20385 -11.10029 -10.65180 -10.60708 -10.58827 -10.49214 -10.27899 -10.22739 -10.11529 -9.24622 -8.91755 -8.13819 -6.69281 -5.31481 2.23874 3.06749 3.13203 3.19594 4.05717 4.32308 4.47351 4.65211 4.66718 4.83959 4.95600 5.18783 5.26833 5.47927 5.54458 5.68250 5.74491 5.85681 5.98271 6.04161 6.10514 6.15178 6.22068 6.32047 6.36603 6.46728 6.89550 7.33618 7.48048 7.98286 8.89237 10.24335 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.007219 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.541125 B = 3877.471966 C = 4049.050253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.079 3.921 4 F -0.216 7.216 5 C -0.116 4.116 6 C 0.126 3.874 7 N -1.020 6.020 8 S 2.728 3.272 9 O -1.000 7.000 10 O -1.001 7.001 11 C -1.020 5.020 12 H 0.102 0.898 13 C 0.132 3.868 14 N -0.846 5.846 15 Si 0.921 3.079 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.263 1.263 19 C 0.134 3.866 20 H 0.056 0.944 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.291 0.709 30 H 0.061 0.939 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 11.291 -8.833 14.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 C 0.024 3.976 4 F -0.197 7.197 5 C -0.155 4.155 6 C 0.000 4.000 7 N -0.856 5.856 8 S 2.830 3.170 9 O -0.991 6.991 10 O -0.992 6.992 11 C -1.154 5.154 12 H 0.120 0.880 13 C -0.086 4.086 14 N -0.476 5.476 15 Si 0.745 3.255 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.187 1.187 19 C 0.007 3.993 20 H 0.075 0.925 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.354 10.695 -8.329 13.561 hybrid contribution 1.602 -0.284 0.200 1.639 sum 1.248 10.411 -8.129 13.268 Atomic orbital electron populations 1.21718 0.92801 1.02904 1.01917 1.22425 0.97395 0.94012 0.97435 1.21944 0.99735 0.90959 0.84963 1.92763 1.91677 1.82107 1.53118 1.22662 1.01333 0.94763 0.96721 1.21471 1.01544 0.96003 0.80980 1.59162 1.91579 1.19201 1.15638 1.00135 0.76312 0.69662 0.70917 1.93358 1.81187 1.80948 1.43612 1.93354 1.79314 1.53730 1.72777 1.30628 1.17432 1.25172 1.42140 0.88020 1.24766 0.99957 0.92889 0.90966 1.69898 1.32477 1.18460 1.26792 0.86158 0.81722 0.78116 0.79523 1.19162 1.19924 1.18687 1.21848 1.00269 0.80807 0.96341 0.92545 0.91563 0.91825 0.90731 0.90533 0.90287 0.90590 0.91784 0.91816 0.89864 0.92086 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.47 37.16 0.31 -1.44 16 2 C -0.11 -1.44 0.77 -152.35 -0.12 -1.56 16 3 C 0.08 0.84 6.44 37.16 0.24 1.08 16 4 F -0.22 -2.90 16.83 2.25 0.04 -2.86 16 5 C -0.12 -1.37 5.92 -24.89 -0.15 -1.51 16 6 C 0.13 2.08 6.62 -3.06 -0.02 2.06 16 7 N -1.02 -20.98 3.69 -111.38 -0.41 -21.39 16 8 S 2.73 73.99 5.22 -107.50 -0.56 73.43 16 9 O -1.00 -29.83 17.34 -57.17 -0.99 -30.82 16 10 O -1.00 -29.61 17.60 -57.17 -1.01 -30.62 16 11 C -1.02 -28.58 9.75 30.60 0.30 -28.29 16 12 H 0.10 2.62 7.81 -52.48 -0.41 2.21 16 13 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 14 N -0.85 -25.24 13.19 55.43 0.73 -24.51 16 15 Si 0.92 20.80 29.54 -169.99 -5.02 15.78 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 19 C 0.13 2.33 5.90 -2.50 -0.01 2.32 16 20 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 21 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16 22 H 0.06 0.84 7.93 -51.93 -0.41 0.43 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 26 H 0.08 0.76 8.03 -51.93 -0.42 0.34 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.29 7.77 8.31 -40.82 -0.34 7.43 16 30 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 31 H 0.08 1.55 7.69 -51.93 -0.40 1.15 16 LS Contribution 278.47 15.07 4.20 4.20 Total: -1.00 -35.19 278.47 -6.70 -41.89 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.13 Total: -1.41 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 0.45 Total: -23.70 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.32 Total: -45.90 kcal Atomic # 8 Polarization: -59.44 SS G_CDS: -2.00 Total: -61.44 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 73.99 SS G_CDS: -0.56 Total: 73.43 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -35.19 -6.70 -41.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951793.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.089 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds