Wall clock time and date at job start Mon Mar 30 2020 18:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 110.88762 * 2 1 4 4 F 1.39901 * 109.47234 * 60.70101 * 3 2 1 5 5 C 1.55160 * 111.00398 * 236.11447 * 2 1 3 6 6 C 1.54324 * 102.94339 * 277.39358 * 5 2 1 7 7 N 1.47028 * 107.27241 * 337.80660 * 6 5 2 8 8 S 1.65597 * 125.64974 * 178.97275 * 7 6 5 9 9 O 1.42101 * 106.40272 * 203.51702 * 8 7 6 10 10 O 1.42100 * 106.40275 * 336.43895 * 8 7 6 11 11 C 1.76201 * 107.21636 * 89.97882 * 8 7 6 12 12 H 1.08003 * 120.00145 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00100 * 180.02562 * 11 8 7 14 14 N 1.31515 * 119.99526 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 119.99797 * 179.97438 * 13 11 8 16 16 H 1.48499 * 109.47027 * 90.00107 * 15 13 11 17 17 H 1.48504 * 109.46857 * 209.99557 * 15 13 11 18 18 H 1.48500 * 109.47456 * 329.99879 * 15 13 11 19 19 C 1.47470 * 108.72211 * 358.97657 * 7 6 5 20 20 H 1.09007 * 109.46910 * 59.30144 * 1 2 3 21 21 H 1.09001 * 109.47155 * 179.29726 * 1 2 3 22 22 H 1.08995 * 109.47147 * 299.30276 * 1 2 3 23 23 H 1.09002 * 109.47153 * 300.69678 * 3 2 1 24 24 H 1.09001 * 109.46832 * 180.69869 * 3 2 1 25 25 H 1.09000 * 110.71735 * 35.75815 * 5 2 1 26 26 H 1.08999 * 110.71401 * 158.85139 * 5 2 1 27 27 H 1.08993 * 109.88404 * 97.22426 * 6 5 2 28 28 H 1.08994 * 109.88154 * 218.39079 * 6 5 2 29 29 H 0.97000 * 119.99118 * 180.02562 * 14 13 11 30 30 H 1.09002 * 110.35026 * 265.25126 * 19 7 6 31 31 H 1.09000 * 110.40677 * 142.91358 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 9 1.6387 2.0953 1.1503 5 6 2.0862 -0.8076 -1.2025 6 6 2.0294 -2.2644 -0.6964 7 7 2.0152 -2.2158 0.7730 8 16 1.9340 -3.5269 1.7813 9 8 1.4003 -3.0551 3.0109 10 8 1.3411 -4.5761 1.0283 11 6 3.5890 -4.0296 2.1175 12 1 4.4164 -3.4913 1.6793 13 6 3.8276 -5.1108 2.9392 14 7 2.8200 -5.7665 3.4723 15 14 5.5822 -5.6440 3.2950 16 1 6.0806 -4.9338 4.5001 17 1 5.6152 -7.1092 3.5350 18 1 6.4455 -5.3132 2.1329 19 6 2.0852 -0.8062 1.2007 20 1 -0.3633 0.5247 -0.8837 21 1 -0.3633 -1.0276 -0.0126 22 1 -0.3633 0.5029 0.8961 23 1 1.7149 1.9559 -0.8837 24 1 3.1651 1.4025 -0.0125 25 1 1.4520 -0.6790 -2.0797 26 1 3.1120 -0.5129 -1.4234 27 1 1.1229 -2.7481 -1.0600 28 1 2.9073 -2.8109 -1.0407 29 1 2.9880 -6.5269 4.0507 30 1 3.1179 -0.5224 1.4032 31 1 1.4667 -0.6458 2.0838 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951793.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:44 Heat of formation + Delta-G solvation = -178.357131 kcal Electronic energy + Delta-G solvation = -17452.671627 eV Core-core repulsion = 14387.233451 eV Total energy + Delta-G solvation = -3065.438176 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.46398 -39.90001 -37.47349 -36.20016 -35.23750 -33.80431 -30.37103 -28.30705 -28.05010 -26.53821 -23.10663 -20.79259 -20.32520 -19.29716 -18.33739 -17.23374 -17.02145 -16.55511 -16.46182 -16.11788 -15.88809 -15.22983 -14.74306 -14.47815 -14.14896 -14.02494 -13.38681 -13.28453 -13.13886 -13.04432 -12.91483 -12.57970 -12.51504 -12.32411 -12.18443 -11.99317 -11.67181 -11.46050 -11.39005 -11.28750 -11.02372 -9.76725 -8.78245 -7.53679 0.22969 1.30817 1.32075 1.48379 2.17783 2.53335 2.83908 3.34975 3.52273 3.65021 3.80523 4.08628 4.19050 4.34338 4.36478 4.42142 4.56600 4.63658 4.76197 4.81496 4.89974 4.96786 5.07551 5.13034 5.17165 5.24293 5.34343 5.45242 5.81158 5.86741 6.73141 8.17127 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.007219 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.541125 B = 3877.471966 C = 4049.050253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C 0.078 3.922 4 F -0.235 7.235 5 C -0.098 4.098 6 C 0.109 3.891 7 N -1.022 6.022 8 S 2.730 3.270 9 O -1.043 7.043 10 O -1.039 7.039 11 C -1.041 5.041 12 H 0.119 0.881 13 C 0.067 3.933 14 N -0.896 5.896 15 Si 0.993 3.007 16 H -0.254 1.254 17 H -0.260 1.260 18 H -0.246 1.246 19 C 0.119 3.881 20 H 0.092 0.908 21 H 0.040 0.960 22 H 0.050 0.950 23 H 0.114 0.886 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.105 0.895 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.300 0.700 30 H 0.073 0.927 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 12.958 -10.777 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 C 0.023 3.977 4 F -0.216 7.216 5 C -0.136 4.136 6 C -0.016 4.016 7 N -0.861 5.861 8 S 2.834 3.166 9 O -1.033 7.033 10 O -1.029 7.029 11 C -1.175 5.175 12 H 0.137 0.863 13 C -0.146 4.146 14 N -0.528 5.528 15 Si 0.811 3.189 16 H -0.178 1.178 17 H -0.185 1.185 18 H -0.169 1.169 19 C -0.006 4.006 20 H 0.111 0.889 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.132 0.868 24 H 0.115 0.885 25 H 0.132 0.868 26 H 0.123 0.877 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.649 12.370 -10.281 16.169 hybrid contribution 0.903 -0.753 0.765 1.403 sum 2.552 11.616 -9.516 15.232 Atomic orbital electron populations 1.21758 0.93067 1.01656 1.03125 1.22441 0.97250 0.95356 0.95534 1.22184 1.01007 0.88981 0.85503 1.92732 1.91980 1.82336 1.54577 1.22682 1.03885 0.90289 0.96780 1.21883 1.01431 0.99982 0.78320 1.58563 1.91356 1.19028 1.17137 0.99560 0.76294 0.70136 0.70609 1.93291 1.82004 1.81773 1.46253 1.93289 1.80119 1.56231 1.73311 1.30980 1.18141 1.25809 1.42554 0.86262 1.26109 1.05423 0.92715 0.90336 1.69997 1.35391 1.19476 1.27899 0.85091 0.75113 0.78460 0.80250 1.17814 1.18453 1.16860 1.22177 1.00941 0.79726 0.97802 0.88894 0.94109 0.93044 0.86787 0.88499 0.86806 0.87689 0.92543 0.91504 0.89009 0.90842 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.47 71.98 0.61 -2.74 16 2 C -0.10 -2.43 0.77 -50.79 -0.04 -2.47 16 3 C 0.08 1.34 6.44 71.98 0.46 1.80 16 4 F -0.23 -5.80 16.83 44.97 0.76 -5.04 16 5 C -0.10 -1.91 5.92 31.78 0.19 -1.72 16 6 C 0.11 3.47 6.62 86.73 0.57 4.04 16 7 N -1.02 -42.56 3.69 -506.30 -1.87 -44.43 16 8 S 2.73 154.02 5.22 -56.49 -0.29 153.73 16 9 O -1.04 -65.55 17.34 -128.00 -2.22 -67.77 16 10 O -1.04 -64.27 17.60 -128.00 -2.25 -66.53 16 11 C -1.04 -59.13 9.75 67.73 0.66 -58.47 16 12 H 0.12 6.09 7.81 -2.91 -0.02 6.07 16 13 C 0.07 3.80 5.46 84.65 0.46 4.27 16 14 N -0.90 -54.90 13.19 21.45 0.28 -54.62 16 15 Si 0.99 41.89 29.54 68.60 2.03 43.92 16 16 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 17 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 18 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 19 C 0.12 4.12 5.90 86.85 0.51 4.64 16 20 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 21 H 0.04 1.17 7.84 -2.39 -0.02 1.15 16 22 H 0.05 1.34 7.93 -2.39 -0.02 1.32 16 23 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.11 1.53 8.04 -2.39 -0.02 1.51 16 26 H 0.10 1.52 8.03 -2.39 -0.02 1.50 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.30 16.41 8.31 -92.71 -0.77 15.64 16 30 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16 31 H 0.05 2.13 7.69 -2.39 -0.02 2.11 16 Total: -1.00 -80.84 278.47 0.98 -79.86 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.12 Total: 11.55 kcal Atomic # 6 Polarization: -54.10 SS G_CDS: 3.43 Total: -50.67 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -1.58 Total: -99.05 kcal Atomic # 8 Polarization: -129.83 SS G_CDS: -4.47 Total: -134.30 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.76 Total: -5.04 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 154.02 SS G_CDS: -0.29 Total: 153.73 kcal Total: -80.84 0.98 -79.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951793.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.499 kcal (2) G-P(sol) polarization free energy of solvation -80.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds