Wall clock time and date at job start Mon Mar 30 2020 18:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 110.64271 * 2 1 4 4 F 1.39901 * 109.47073 * 56.85722 * 3 2 1 5 5 C 1.55159 * 110.72233 * 123.33449 * 2 1 3 6 6 C 1.55128 * 101.48313 * 82.69820 * 5 2 1 7 7 N 1.47423 * 104.72562 * 37.29617 * 6 5 2 8 8 S 1.65602 * 125.65171 * 155.82146 * 7 6 5 9 9 O 1.42099 * 106.40422 * 156.15161 * 8 7 6 10 10 O 1.42096 * 106.40177 * 23.22611 * 8 7 6 11 11 C 1.76198 * 107.21304 * 269.69066 * 8 7 6 12 12 H 1.08004 * 120.00524 * 0.27531 * 11 8 7 13 13 C 1.37885 * 119.99742 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46986 * 90.00256 * 15 13 11 17 17 H 1.48496 * 109.47029 * 210.00273 * 15 13 11 18 18 H 1.48499 * 109.47352 * 330.00102 * 15 13 11 19 19 C 1.47030 * 108.70127 * 335.55026 * 7 6 5 20 20 H 1.09003 * 109.47291 * 183.14332 * 1 2 3 21 21 H 1.09008 * 109.47001 * 303.14136 * 1 2 3 22 22 H 1.09002 * 109.47144 * 63.14046 * 1 2 3 23 23 H 1.08990 * 109.47290 * 176.85914 * 3 2 1 24 24 H 1.09002 * 109.46533 * 296.86138 * 3 2 1 25 25 H 1.09004 * 111.00117 * 200.93307 * 5 2 1 26 26 H 1.09003 * 111.00243 * 324.75112 * 5 2 1 27 27 H 1.09002 * 110.49310 * 278.45290 * 6 5 2 28 28 H 1.08998 * 110.34685 * 156.06133 * 6 5 2 29 29 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 30 30 H 1.09006 * 109.87798 * 120.70239 * 19 7 6 31 31 H 1.08996 * 109.88435 * 241.71459 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 9 1.5589 2.1224 1.1044 5 6 2.0790 -0.7975 1.2125 6 6 2.0075 -2.2536 0.6823 7 7 2.3716 -2.1518 -0.7427 8 16 3.0023 -3.3724 -1.6673 9 8 2.6842 -3.0593 -3.0163 10 8 2.6198 -4.5891 -1.0407 11 6 4.7565 -3.2742 -1.5341 12 1 5.2097 -2.5091 -0.9211 13 6 5.5506 -4.1782 -2.2075 14 7 4.9988 -5.1132 -2.9496 15 14 7.4105 -4.0737 -2.0669 16 1 7.8676 -4.9022 -0.9225 17 1 8.0305 -4.5748 -3.3197 18 1 7.8117 -2.6610 -1.8468 19 6 2.0759 -0.7891 -1.2087 20 1 -0.3634 -1.0261 0.0564 21 1 -0.3633 0.5619 0.8606 22 1 -0.3633 0.4643 -0.9168 23 1 3.1576 1.4101 0.0563 24 1 1.7629 1.9354 -0.9168 25 1 3.1062 -0.5097 1.4365 26 1 1.4399 -0.6692 2.0861 27 1 0.9974 -2.6492 0.7884 28 1 2.7208 -2.8852 1.2118 29 1 5.5575 -5.7489 -3.4236 30 1 2.9868 -0.3179 -1.5781 31 1 1.3282 -0.8223 -2.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951798.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:49 Heat of formation + Delta-G solvation = -151.239436 kcal Electronic energy + Delta-G solvation = -17401.006103 eV Core-core repulsion = 14336.743839 eV Total energy + Delta-G solvation = -3064.262265 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.58940 -38.68592 -35.25174 -33.97587 -33.14184 -32.50887 -29.19854 -27.12067 -26.14284 -25.13317 -21.97695 -19.22943 -18.75032 -17.46473 -16.37284 -16.04223 -15.69171 -15.52194 -14.84654 -14.55860 -14.18419 -13.74314 -13.55888 -12.84678 -12.70098 -12.18787 -12.15393 -11.96082 -11.90061 -11.26093 -11.22548 -11.06510 -10.80210 -10.62331 -10.47737 -10.37377 -10.30717 -10.25226 -10.18192 -9.26709 -8.94861 -8.17859 -6.71414 -5.33831 2.20837 3.05079 3.11812 3.18023 4.03927 4.37891 4.43100 4.62633 4.63184 4.86288 5.00652 5.16433 5.30565 5.50691 5.53171 5.71417 5.72549 5.82989 5.96021 6.02088 6.04382 6.12422 6.21428 6.28302 6.33525 6.43633 6.86939 7.31535 7.44766 7.96170 8.87116 10.22164 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.032326 B = 0.007310 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.966533 B = 3829.288564 C = 4219.228984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 C 0.076 3.924 4 F -0.218 7.218 5 C -0.119 4.119 6 C 0.126 3.874 7 N -1.020 6.020 8 S 2.728 3.272 9 O -1.001 7.001 10 O -1.000 7.000 11 C -1.020 5.020 12 H 0.102 0.898 13 C 0.132 3.868 14 N -0.846 5.846 15 Si 0.921 3.079 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.263 1.263 19 C 0.138 3.862 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.291 0.709 30 H 0.064 0.936 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.190 10.660 6.379 13.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C 0.021 3.979 4 F -0.199 7.199 5 C -0.158 4.158 6 C 0.000 4.000 7 N -0.856 5.856 8 S 2.830 3.170 9 O -0.992 6.992 10 O -0.991 6.991 11 C -1.154 5.154 12 H 0.120 0.880 13 C -0.086 4.086 14 N -0.476 5.476 15 Si 0.745 3.255 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.187 1.187 19 C 0.011 3.989 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.708 9.823 5.721 12.304 hybrid contribution 1.558 0.276 0.271 1.605 sum -3.151 10.099 5.992 12.158 Atomic orbital electron populations 1.21789 0.92900 1.02713 1.02052 1.22252 0.97187 0.94266 0.97291 1.21997 0.98989 0.90602 0.86349 1.92732 1.89384 1.80993 1.56798 1.22919 1.01568 0.94831 0.96505 1.21823 1.00200 0.96233 0.81704 1.59184 1.80776 1.24805 1.20830 1.00156 0.75734 0.69982 0.71172 1.93355 1.86661 1.84041 1.35118 1.93361 1.85485 1.42882 1.77360 1.30623 1.17721 1.25239 1.41769 0.87991 1.24764 1.01898 0.91569 0.90322 1.69894 1.38781 1.14235 1.24701 0.86162 0.81296 0.79541 0.78547 1.19174 1.19928 1.18676 1.21455 0.99893 0.82750 0.94782 0.91664 0.92020 0.92256 0.90295 0.90524 0.90463 0.90257 0.92253 0.90602 0.89847 0.91738 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.32 37.16 0.31 -1.28 16 2 C -0.11 -1.39 0.75 -152.67 -0.12 -1.51 16 3 C 0.08 0.84 6.31 37.16 0.23 1.07 16 4 F -0.22 -2.69 16.66 2.25 0.04 -2.65 16 5 C -0.12 -1.57 5.96 -24.46 -0.15 -1.72 16 6 C 0.13 2.11 6.67 -2.41 -0.02 2.09 16 7 N -1.02 -20.61 3.70 -111.29 -0.41 -21.02 16 8 S 2.73 72.75 5.22 -107.50 -0.56 72.18 16 9 O -1.00 -29.23 17.60 -57.17 -1.01 -30.24 16 10 O -1.00 -29.34 17.60 -57.17 -1.01 -30.34 16 11 C -1.02 -28.06 9.75 30.60 0.30 -27.76 16 12 H 0.10 2.57 7.81 -52.48 -0.41 2.16 16 13 C 0.13 3.69 5.46 -17.82 -0.10 3.60 16 14 N -0.85 -24.94 13.19 55.43 0.73 -24.21 16 15 Si 0.92 20.53 29.54 -169.99 -5.02 15.51 16 16 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 19 C 0.14 2.27 6.16 -3.06 -0.02 2.25 16 20 H 0.06 0.80 7.39 -51.93 -0.38 0.41 16 21 H 0.06 0.66 7.72 -51.92 -0.40 0.26 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.98 8.03 -51.93 -0.42 0.57 16 26 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 27 H 0.06 0.93 7.67 -51.93 -0.40 0.53 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.06 1.02 7.82 -51.93 -0.41 0.61 16 31 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 LS Contribution 277.39 15.07 4.18 4.18 Total: -1.00 -34.42 277.39 -6.67 -41.09 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.07 Total: -1.24 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 0.45 Total: -23.26 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.32 Total: -45.23 kcal Atomic # 8 Polarization: -58.57 SS G_CDS: -2.01 Total: -60.58 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 72.75 SS G_CDS: -0.56 Total: 72.18 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -34.42 -6.67 -41.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951798.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.145 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds