Wall clock time and date at job start Mon Mar 30 2020 18:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 110.64271 * 2 1 4 4 F 1.39901 * 109.47073 * 56.85722 * 3 2 1 5 5 C 1.55159 * 110.72233 * 123.33449 * 2 1 3 6 6 C 1.55128 * 101.48313 * 82.69820 * 5 2 1 7 7 N 1.47423 * 104.72562 * 37.29617 * 6 5 2 8 8 S 1.65602 * 125.65171 * 155.82146 * 7 6 5 9 9 O 1.42099 * 106.40422 * 156.15161 * 8 7 6 10 10 O 1.42096 * 106.40177 * 23.22611 * 8 7 6 11 11 C 1.76198 * 107.21304 * 269.69066 * 8 7 6 12 12 H 1.08004 * 120.00524 * 0.27531 * 11 8 7 13 13 C 1.37885 * 119.99742 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46986 * 90.00256 * 15 13 11 17 17 H 1.48496 * 109.47029 * 210.00273 * 15 13 11 18 18 H 1.48499 * 109.47352 * 330.00102 * 15 13 11 19 19 C 1.47030 * 108.70127 * 335.55026 * 7 6 5 20 20 H 1.09003 * 109.47291 * 183.14332 * 1 2 3 21 21 H 1.09008 * 109.47001 * 303.14136 * 1 2 3 22 22 H 1.09002 * 109.47144 * 63.14046 * 1 2 3 23 23 H 1.08990 * 109.47290 * 176.85914 * 3 2 1 24 24 H 1.09002 * 109.46533 * 296.86138 * 3 2 1 25 25 H 1.09004 * 111.00117 * 200.93307 * 5 2 1 26 26 H 1.09003 * 111.00243 * 324.75112 * 5 2 1 27 27 H 1.09002 * 110.49310 * 278.45290 * 6 5 2 28 28 H 1.08998 * 110.34685 * 156.06133 * 6 5 2 29 29 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 30 30 H 1.09006 * 109.87798 * 120.70239 * 19 7 6 31 31 H 1.08996 * 109.88435 * 241.71459 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 9 1.5589 2.1224 1.1044 5 6 2.0790 -0.7975 1.2125 6 6 2.0075 -2.2536 0.6823 7 7 2.3716 -2.1518 -0.7427 8 16 3.0023 -3.3724 -1.6673 9 8 2.6842 -3.0593 -3.0163 10 8 2.6198 -4.5891 -1.0407 11 6 4.7565 -3.2742 -1.5341 12 1 5.2097 -2.5091 -0.9211 13 6 5.5506 -4.1782 -2.2075 14 7 4.9988 -5.1132 -2.9496 15 14 7.4105 -4.0737 -2.0669 16 1 7.8676 -4.9022 -0.9225 17 1 8.0305 -4.5748 -3.3197 18 1 7.8117 -2.6610 -1.8468 19 6 2.0759 -0.7891 -1.2087 20 1 -0.3634 -1.0261 0.0564 21 1 -0.3633 0.5619 0.8606 22 1 -0.3633 0.4643 -0.9168 23 1 3.1576 1.4101 0.0563 24 1 1.7629 1.9354 -0.9168 25 1 3.1062 -0.5097 1.4365 26 1 1.4399 -0.6692 2.0861 27 1 0.9974 -2.6492 0.7884 28 1 2.7208 -2.8852 1.2118 29 1 5.5575 -5.7489 -3.4236 30 1 2.9868 -0.3179 -1.5781 31 1 1.3282 -0.8223 -2.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951798.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:48 Heat of formation + Delta-G solvation = -177.266973 kcal Electronic energy + Delta-G solvation = -17402.134742 eV Core-core repulsion = 14336.743839 eV Total energy + Delta-G solvation = -3065.390903 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.48851 -39.92148 -37.45462 -36.18055 -35.22266 -33.81552 -30.46111 -28.28572 -28.03153 -26.32029 -23.34205 -20.77054 -20.29862 -19.25892 -18.31641 -17.26506 -17.01320 -16.58088 -16.38958 -16.13848 -15.92825 -15.33165 -14.86568 -14.20661 -14.01692 -13.97352 -13.38034 -13.23237 -13.21409 -13.12308 -13.03005 -12.56788 -12.50731 -12.31734 -12.16864 -11.94875 -11.79716 -11.43059 -11.32119 -11.27357 -11.01484 -9.78976 -8.76749 -7.51594 0.23466 1.32496 1.33101 1.49427 2.18861 2.55058 2.86060 3.30164 3.55142 3.61889 3.79269 4.08553 4.14704 4.27656 4.35919 4.41163 4.52096 4.64430 4.77258 4.79614 4.91021 4.96079 5.06231 5.14817 5.19025 5.20724 5.37595 5.43327 5.79391 5.89005 6.75288 8.18489 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.032326 B = 0.007310 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.966533 B = 3829.288564 C = 4219.228984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 C 0.078 3.922 4 F -0.222 7.222 5 C -0.109 4.109 6 C 0.113 3.887 7 N -1.023 6.023 8 S 2.733 3.267 9 O -1.039 7.039 10 O -1.040 7.040 11 C -1.040 5.040 12 H 0.120 0.880 13 C 0.069 3.931 14 N -0.896 5.896 15 Si 0.991 3.009 16 H -0.254 1.254 17 H -0.262 1.262 18 H -0.246 1.246 19 C 0.125 3.875 20 H 0.053 0.947 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.299 0.701 30 H 0.070 0.930 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.233 12.646 7.570 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.101 4.101 3 C 0.023 3.977 4 F -0.204 7.204 5 C -0.148 4.148 6 C -0.012 4.012 7 N -0.861 5.861 8 S 2.836 3.164 9 O -1.029 7.029 10 O -1.030 7.030 11 C -1.173 5.173 12 H 0.138 0.862 13 C -0.144 4.144 14 N -0.527 5.527 15 Si 0.809 3.191 16 H -0.178 1.178 17 H -0.186 1.186 18 H -0.169 1.169 19 C 0.000 4.000 20 H 0.073 0.927 21 H 0.095 0.905 22 H 0.087 0.913 23 H 0.107 0.893 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.123 0.877 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.778 11.813 6.914 14.200 hybrid contribution 1.162 -0.312 -0.070 1.205 sum -2.616 11.502 6.844 13.637 Atomic orbital electron populations 1.21806 0.91904 1.02444 1.03275 1.22215 0.97940 0.94961 0.95024 1.22034 0.99513 0.89187 0.86978 1.92727 1.89517 1.80907 1.57202 1.22925 1.02770 0.91830 0.97296 1.22146 1.00298 0.99028 0.79686 1.58602 1.80286 1.25204 1.22048 0.99545 0.75902 0.70215 0.70741 1.93292 1.87123 1.84768 1.37728 1.93297 1.85996 1.45858 1.77876 1.30973 1.18388 1.25869 1.42091 0.86232 1.26064 1.08069 0.90798 0.89478 1.69990 1.41237 1.15485 1.26012 0.85116 0.73926 0.80639 0.79408 1.17847 1.18616 1.16921 1.21771 1.00426 0.81242 0.96582 0.92740 0.90543 0.91304 0.89289 0.88500 0.89724 0.87689 0.91529 0.91437 0.89036 0.91156 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.32 71.98 0.60 -2.24 16 2 C -0.10 -2.31 0.75 -50.99 -0.04 -2.35 16 3 C 0.08 1.45 6.31 71.98 0.45 1.91 16 4 F -0.22 -4.70 16.66 44.97 0.75 -3.95 16 5 C -0.11 -2.60 5.96 32.06 0.19 -2.41 16 6 C 0.11 3.70 6.67 86.93 0.58 4.28 16 7 N -1.02 -41.30 3.70 -506.00 -1.87 -43.17 16 8 S 2.73 149.48 5.22 -56.49 -0.29 149.19 16 9 O -1.04 -62.67 17.60 -128.00 -2.25 -64.92 16 10 O -1.04 -63.19 17.60 -128.00 -2.25 -65.45 16 11 C -1.04 -57.47 9.75 67.74 0.66 -56.81 16 12 H 0.12 5.94 7.81 -2.91 -0.02 5.91 16 13 C 0.07 3.83 5.46 84.66 0.46 4.29 16 14 N -0.90 -53.85 13.19 21.45 0.28 -53.56 16 15 Si 0.99 41.10 29.54 68.60 2.03 43.13 16 16 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 18 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 19 C 0.13 4.00 6.16 86.73 0.53 4.53 16 20 H 0.05 1.24 7.39 -2.39 -0.02 1.22 16 21 H 0.08 1.38 7.72 -2.38 -0.02 1.36 16 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.09 1.51 8.11 -2.39 -0.02 1.49 16 24 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.90 8.03 -2.39 -0.02 1.88 16 26 H 0.10 2.00 8.04 -2.39 -0.02 1.98 16 27 H 0.07 2.05 7.67 -2.39 -0.02 2.03 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.30 16.11 8.31 -92.71 -0.77 15.34 16 30 H 0.07 2.13 7.82 -2.38 -0.02 2.11 16 31 H 0.06 2.07 7.85 -2.39 -0.02 2.05 16 Total: -1.00 -75.63 277.39 0.95 -74.68 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.12 Total: 12.84 kcal Atomic # 6 Polarization: -52.24 SS G_CDS: 3.44 Total: -48.79 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -1.59 Total: -96.73 kcal Atomic # 8 Polarization: -125.86 SS G_CDS: -4.51 Total: -130.37 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.75 Total: -3.95 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 16 Polarization: 149.48 SS G_CDS: -0.29 Total: 149.19 kcal Total: -75.63 0.95 -74.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951798.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.583 kcal (2) G-P(sol) polarization free energy of solvation -75.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds