Wall clock time and date at job start Mon Mar 30 2020 18:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99765 * 2 1 4 4 H 1.48494 * 109.47505 * 269.99821 * 3 2 1 5 5 H 1.48495 * 109.46893 * 30.00295 * 3 2 1 6 6 H 1.48505 * 109.46828 * 149.99883 * 3 2 1 7 7 C 1.37877 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00404 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99706 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.40146 * 66.45646 * 9 7 2 11 11 O 1.42095 * 106.40229 * 293.53903 * 9 7 2 12 12 N 1.65602 * 107.21635 * 179.97438 * 9 7 2 13 13 C 1.46498 * 119.99612 * 65.28001 * 12 9 7 14 14 C 1.53001 * 109.47089 * 164.71987 * 13 12 9 15 15 H 1.08999 * 110.01996 * 306.38905 * 14 13 12 16 16 C 1.54260 * 110.03379 * 184.99699 * 14 13 12 17 17 C 1.54887 * 104.19812 * 217.10883 * 16 14 13 18 18 C 1.54885 * 102.74950 * 37.94148 * 17 16 14 19 19 C 1.53882 * 110.03065 * 67.83172 * 14 13 12 20 20 H 1.08999 * 110.03067 * 359.97438 * 19 14 13 21 21 F 1.39901 * 110.03056 * 238.56795 * 19 14 13 22 22 H 0.97001 * 120.00277 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99942 * 244.99525 * 12 9 7 24 24 H 1.08996 * 109.46882 * 284.72133 * 13 12 9 25 25 H 1.08999 * 109.47498 * 44.72066 * 13 12 9 26 26 H 1.09007 * 110.48770 * 335.78653 * 16 14 13 27 27 H 1.09003 * 110.48862 * 98.29507 * 16 14 13 28 28 H 1.09006 * 110.75942 * 156.25629 * 17 16 14 29 29 H 1.09005 * 110.75410 * 279.62948 * 17 16 14 30 30 H 1.09003 * 110.49171 * 80.73800 * 18 17 16 31 31 H 1.09001 * 110.49161 * 203.24762 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4519 -2.7955 -1.2494 11 8 0.4511 -2.7950 1.2500 12 7 2.2485 -3.9354 0.0005 13 6 3.1354 -4.1125 1.1530 14 6 3.7957 -5.4908 1.0813 15 1 3.0347 -6.2642 0.9780 16 6 4.6349 -5.7414 2.3512 17 6 5.8766 -6.5132 1.8398 18 6 6.1682 -5.8296 0.4808 19 6 4.7706 -5.5469 -0.1080 20 1 4.7729 -4.5923 -0.6342 21 9 4.4018 -6.5752 -0.9819 22 1 -0.4850 0.8400 -0.0004 23 1 2.3173 -4.5325 -0.7608 24 1 3.9043 -3.3401 1.1418 25 1 2.5558 -4.0348 2.0729 26 1 4.9333 -4.7959 2.8041 27 1 4.0752 -6.3455 3.0653 28 1 6.7170 -6.3890 2.5228 29 1 5.6444 -7.5689 1.6992 30 1 6.7142 -4.8983 0.6315 31 1 6.7303 -6.4991 -0.1702 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192987583.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:11 Heat of formation + Delta-G solvation = -192.851271 kcal Electronic energy + Delta-G solvation = -17066.561132 eV Core-core repulsion = 14000.494443 eV Total energy + Delta-G solvation = -3066.066689 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.58055 -39.05189 -37.39444 -36.14506 -35.55139 -35.11068 -30.37905 -28.99321 -28.25901 -25.10923 -21.83417 -21.14143 -20.81494 -19.31603 -18.32240 -17.77312 -17.21661 -16.68513 -16.56941 -15.93924 -15.84051 -15.37650 -14.80631 -14.43138 -14.35953 -13.96784 -13.62418 -13.32471 -13.00793 -12.95833 -12.51978 -12.44554 -12.34549 -12.28575 -11.98964 -11.73544 -11.60298 -11.52681 -11.41352 -11.24492 -10.99233 -10.20444 -8.74957 -7.48257 0.35341 1.35520 1.36020 1.52049 2.21594 2.58943 2.97046 3.38575 3.44284 3.63821 3.74599 3.94422 4.22139 4.35450 4.37514 4.48296 4.54720 4.61164 4.72189 4.76008 4.85658 5.00656 5.12053 5.19891 5.25083 5.33494 5.40539 5.46536 5.90423 6.32199 6.78636 8.21724 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.029818 B = 0.006627 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.809916 B = 4223.968439 C = 4546.285874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.992 3.008 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.243 1.243 7 C -1.037 5.037 8 H 0.124 0.876 9 S 2.719 3.281 10 O -1.048 7.048 11 O -1.043 7.043 12 N -1.126 6.126 13 C 0.123 3.877 14 C -0.122 4.122 15 H 0.084 0.916 16 C -0.116 4.116 17 C -0.118 4.118 18 C -0.145 4.145 19 C 0.073 3.927 20 H 0.089 0.911 21 F -0.227 7.227 22 H 0.299 0.701 23 H 0.412 0.588 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.870 -8.296 3.932 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.166 1.166 7 C -1.171 5.171 8 H 0.142 0.858 9 S 2.820 3.180 10 O -1.038 7.038 11 O -1.033 7.033 12 N -0.885 5.885 13 C -0.002 4.002 14 C -0.142 4.142 15 H 0.102 0.898 16 C -0.155 4.155 17 C -0.155 4.155 18 C -0.183 4.183 19 C 0.037 3.963 20 H 0.107 0.893 21 F -0.208 7.208 22 H 0.109 0.891 23 H 0.245 0.755 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.710 -8.284 4.087 16.532 hybrid contribution 0.153 0.714 -0.653 0.979 sum 13.863 -7.570 3.435 16.164 Atomic orbital electron populations 1.70000 1.08888 1.32349 1.41469 1.26058 0.95367 1.05519 0.87540 0.85104 0.79273 0.74668 0.79965 1.18113 1.18856 1.16611 1.30876 1.07302 1.12285 1.66638 0.85767 0.99886 0.72617 0.74037 0.71426 1.93310 1.75033 1.88460 1.47006 1.93299 1.74523 1.88288 1.47156 1.55446 1.55521 1.49683 1.27847 1.21460 0.93170 0.97690 0.87922 1.22648 0.98093 0.96719 0.96772 0.89800 1.22431 0.95949 1.01979 0.95107 1.22501 0.97951 0.99204 0.95875 1.22992 0.94194 1.03119 0.97986 1.22601 0.96130 0.88640 0.88966 0.89311 1.92780 1.93233 1.62734 1.72077 0.89132 0.75509 0.90269 0.91053 0.89563 0.90012 0.88801 0.91285 0.88305 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.52 13.19 21.45 0.28 -53.24 16 2 C 0.07 3.74 5.46 84.65 0.46 4.20 16 3 Si 0.99 40.57 29.54 68.60 2.03 42.60 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 6 H -0.24 -9.09 7.11 99.48 0.71 -8.38 16 7 C -1.04 -56.10 9.72 67.73 0.66 -55.44 16 8 H 0.12 5.91 7.81 -2.91 -0.02 5.89 16 9 S 2.72 146.35 5.02 -56.49 -0.28 146.07 16 10 O -1.05 -63.68 18.02 -128.00 -2.31 -65.99 16 11 O -1.04 -62.23 17.48 -128.00 -2.24 -64.47 16 12 N -1.13 -44.39 5.85 -187.50 -1.10 -45.48 16 13 C 0.12 3.91 5.24 86.38 0.45 4.36 16 14 C -0.12 -2.99 2.88 -10.07 -0.03 -3.02 16 15 H 0.08 2.21 8.02 -2.39 -0.02 2.19 16 16 C -0.12 -2.08 6.36 31.67 0.20 -1.88 16 17 C -0.12 -1.73 6.91 31.88 0.22 -1.51 16 18 C -0.15 -2.42 6.62 31.67 0.21 -2.22 16 19 C 0.07 1.71 3.88 31.32 0.12 1.83 16 20 H 0.09 2.15 7.61 -2.39 -0.02 2.13 16 21 F -0.23 -6.35 17.05 44.97 0.77 -5.58 16 22 H 0.30 16.01 8.31 -92.71 -0.77 15.24 16 23 H 0.41 14.72 8.32 -96.74 -0.80 13.92 16 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.07 2.40 7.74 -2.39 -0.02 2.39 16 26 H 0.09 1.40 7.86 -2.38 -0.02 1.38 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 Total: -1.00 -75.43 279.02 -0.22 -75.65 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.33 Total: 24.13 kcal Atomic # 6 Polarization: -55.98 SS G_CDS: 2.30 Total: -53.68 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -0.81 Total: -98.72 kcal Atomic # 8 Polarization: -125.92 SS G_CDS: -4.54 Total: -130.46 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.77 Total: -5.58 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Atomic # 16 Polarization: 146.35 SS G_CDS: -0.28 Total: 146.07 kcal Total: -75.43 -0.22 -75.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987583.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.202 kcal (2) G-P(sol) polarization free energy of solvation -75.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds