Wall clock time and date at job start Mon Mar 30 2020 18:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99719 * 359.71484 * 7 2 1 10 10 O 1.42094 * 106.40490 * 293.82249 * 9 7 2 11 11 O 1.42107 * 106.39987 * 66.74063 * 9 7 2 12 12 N 1.65600 * 107.21803 * 180.27922 * 9 7 2 13 13 C 1.46496 * 119.99973 * 65.00263 * 12 9 7 14 14 H 1.08999 * 109.47138 * 25.00324 * 13 12 9 15 15 C 1.53001 * 109.47158 * 264.99894 * 13 12 9 16 16 C 1.52999 * 109.47180 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47228 * 59.99822 * 16 15 13 18 18 C 1.52992 * 109.47365 * 300.00133 * 17 16 15 19 19 C 1.52998 * 109.47255 * 60.00095 * 18 17 16 20 20 H 1.08999 * 109.47081 * 59.99615 * 19 18 17 21 21 F 1.39903 * 109.47492 * 180.02562 * 19 18 17 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 0.97002 * 119.99822 * 245.00468 * 12 9 7 24 24 H 1.08999 * 109.47447 * 300.00241 * 15 13 12 25 25 H 1.09003 * 109.47107 * 60.00282 * 15 13 12 26 26 H 1.09003 * 109.46768 * 299.99812 * 16 15 13 27 27 H 1.08999 * 109.47503 * 180.02562 * 16 15 13 28 28 H 1.09008 * 109.47304 * 180.02562 * 17 16 15 29 29 H 1.09003 * 109.47254 * 60.00287 * 17 16 15 30 30 H 1.08999 * 109.47391 * 299.99900 * 18 17 16 31 31 H 1.09004 * 109.47355 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7199 0.0064 10 8 0.4516 -2.7897 1.2564 11 8 0.4514 -2.8008 -1.2430 12 7 2.2485 -3.9353 0.0117 13 6 3.1396 -4.1035 1.1623 14 1 2.6683 -3.6843 2.0512 15 6 4.4601 -3.3784 0.8950 16 6 5.3910 -3.5547 2.0963 17 6 5.6626 -5.0441 2.3169 18 6 4.3422 -5.7692 2.5841 19 6 3.4113 -5.5930 1.3828 20 1 3.8824 -6.0119 0.4936 21 9 2.2036 -6.2556 1.6274 22 1 -0.4850 0.8400 0.0004 23 1 2.3173 -4.5357 -0.7470 24 1 4.9314 -3.7976 0.0060 25 1 4.2665 -2.3173 0.7375 26 1 4.9199 -3.1357 2.9855 27 1 6.3315 -3.0377 1.9061 28 1 6.3254 -5.1697 3.1731 29 1 6.1337 -5.4631 1.4277 30 1 3.8711 -5.3503 3.4733 31 1 4.5357 -6.8303 2.7417 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192987597.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:16 Heat of formation + Delta-G solvation = -167.292468 kcal Electronic energy + Delta-G solvation = -17563.212967 eV Core-core repulsion = 14498.254591 eV Total energy + Delta-G solvation = -3064.958376 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.31592 -38.15174 -35.15736 -33.91479 -33.71296 -33.05099 -30.19518 -28.13605 -26.14236 -22.53488 -22.06823 -20.10858 -18.93654 -17.39125 -16.64346 -15.99789 -15.76970 -15.11813 -14.77245 -14.42651 -14.06832 -13.83814 -13.56675 -13.27937 -12.90510 -12.41258 -12.00043 -11.79377 -11.34008 -11.20693 -11.18401 -11.08165 -10.72123 -10.67755 -10.55839 -10.32751 -10.24930 -10.12545 -9.77878 -9.23342 -8.95977 -8.53090 -6.69085 -5.31405 2.35409 3.07814 3.12794 3.17578 4.05247 4.48434 4.56726 4.65058 4.69987 4.90442 5.02477 5.12829 5.22209 5.43380 5.51585 5.61201 5.70765 5.83968 5.91443 6.00457 6.09340 6.13087 6.28361 6.37775 6.48343 6.61149 6.84926 7.34627 7.89804 7.98322 8.89460 10.25292 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.027060 B = 0.008858 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.470662 B = 3160.302466 C = 3897.741614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -1.021 5.021 8 H 0.105 0.895 9 S 2.714 3.286 10 O -1.005 7.005 11 O -1.007 7.007 12 N -1.130 6.130 13 C 0.136 3.864 14 H 0.101 0.899 15 C -0.143 4.143 16 C -0.123 4.123 17 C -0.116 4.116 18 C -0.145 4.145 19 C 0.088 3.912 20 H 0.083 0.917 21 F -0.209 7.209 22 H 0.291 0.709 23 H 0.402 0.598 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.117 -7.182 3.490 14.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -1.154 5.154 8 H 0.123 0.877 9 S 2.814 3.186 10 O -0.995 6.995 11 O -0.997 6.997 12 N -0.882 5.882 13 C 0.027 3.973 14 H 0.119 0.881 15 C -0.183 4.183 16 C -0.161 4.161 17 C -0.154 4.154 18 C -0.183 4.183 19 C 0.050 3.950 20 H 0.101 0.899 21 F -0.189 7.189 22 H 0.102 0.898 23 H 0.232 0.768 24 H 0.086 0.914 25 H 0.109 0.891 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.911 -7.136 3.657 13.540 hybrid contribution 0.952 0.910 -0.372 1.369 sum 11.863 -6.226 3.285 13.794 Atomic orbital electron populations 1.69893 1.06801 1.30809 1.39934 1.24739 0.94432 1.00756 0.88565 0.86226 0.79908 0.79852 0.79712 1.18892 1.20160 1.18851 1.30621 1.05999 1.11785 1.66993 0.87689 1.00447 0.72076 0.73211 0.72846 1.93361 1.72735 1.87468 1.45920 1.93372 1.73039 1.87638 1.45679 1.56031 1.55178 1.50903 1.26088 1.21144 0.91528 0.93928 0.90674 0.88084 1.22214 0.94720 1.03140 0.98185 1.21582 0.99713 0.95737 0.99058 1.21501 0.96202 0.95810 1.01870 1.22140 0.96177 1.01633 0.98390 1.21880 0.81505 0.92474 0.99091 0.89949 1.92827 1.48084 1.82194 1.95840 0.89841 0.76779 0.91429 0.89063 0.91276 0.91461 0.91411 0.91704 0.90331 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.88 13.19 55.43 0.73 -24.15 16 2 C 0.13 3.68 5.46 -17.82 -0.10 3.58 16 3 Si 0.92 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -1.02 -27.43 9.57 30.60 0.29 -27.14 16 8 H 0.11 2.50 5.61 -52.49 -0.29 2.21 16 9 S 2.71 72.47 5.00 -107.50 -0.54 71.93 16 10 O -1.00 -29.88 17.36 -57.17 -0.99 -30.87 16 11 O -1.01 -29.90 18.02 -57.17 -1.03 -30.93 16 12 N -1.13 -22.63 5.39 -4.89 -0.03 -22.66 16 13 C 0.14 2.33 2.55 -67.93 -0.17 2.16 16 14 H 0.10 1.93 7.50 -51.93 -0.39 1.54 16 15 C -0.14 -2.07 5.53 -26.73 -0.15 -2.22 16 16 C -0.12 -1.40 5.92 -26.74 -0.16 -1.56 16 17 C -0.12 -1.12 5.92 -26.74 -0.16 -1.28 16 18 C -0.14 -1.63 5.66 -26.74 -0.15 -1.78 16 19 C 0.09 1.26 3.43 -26.73 -0.09 1.17 16 20 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 21 F -0.21 -3.64 17.00 2.25 0.04 -3.60 16 22 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16 23 H 0.40 6.99 8.84 -34.47 -0.30 6.69 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.09 1.50 5.74 -51.93 -0.30 1.20 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 272.00 15.07 4.10 4.10 Total: -1.00 -34.93 272.00 -7.23 -42.16 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -3.80 Total: 5.82 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -0.69 Total: -27.06 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.70 Total: -46.81 kcal Atomic # 8 Polarization: -59.77 SS G_CDS: -2.02 Total: -61.80 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.04 Total: -3.60 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 72.47 SS G_CDS: -0.54 Total: 71.93 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -34.93 -7.23 -42.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987597.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.137 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds