Wall clock time and date at job start Mon Mar 30 2020 18:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99719 * 359.71484 * 7 2 1 10 10 O 1.42094 * 106.40490 * 293.82249 * 9 7 2 11 11 O 1.42107 * 106.39987 * 66.74063 * 9 7 2 12 12 N 1.65600 * 107.21803 * 180.27922 * 9 7 2 13 13 C 1.46496 * 119.99973 * 65.00263 * 12 9 7 14 14 H 1.08999 * 109.47138 * 25.00324 * 13 12 9 15 15 C 1.53001 * 109.47158 * 264.99894 * 13 12 9 16 16 C 1.52999 * 109.47180 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47228 * 59.99822 * 16 15 13 18 18 C 1.52992 * 109.47365 * 300.00133 * 17 16 15 19 19 C 1.52998 * 109.47255 * 60.00095 * 18 17 16 20 20 H 1.08999 * 109.47081 * 59.99615 * 19 18 17 21 21 F 1.39903 * 109.47492 * 180.02562 * 19 18 17 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 0.97002 * 119.99822 * 245.00468 * 12 9 7 24 24 H 1.08999 * 109.47447 * 300.00241 * 15 13 12 25 25 H 1.09003 * 109.47107 * 60.00282 * 15 13 12 26 26 H 1.09003 * 109.46768 * 299.99812 * 16 15 13 27 27 H 1.08999 * 109.47503 * 180.02562 * 16 15 13 28 28 H 1.09008 * 109.47304 * 180.02562 * 17 16 15 29 29 H 1.09003 * 109.47254 * 60.00287 * 17 16 15 30 30 H 1.08999 * 109.47391 * 299.99900 * 18 17 16 31 31 H 1.09004 * 109.47355 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7199 0.0064 10 8 0.4516 -2.7897 1.2564 11 8 0.4514 -2.8008 -1.2430 12 7 2.2485 -3.9353 0.0117 13 6 3.1396 -4.1035 1.1623 14 1 2.6683 -3.6843 2.0512 15 6 4.4601 -3.3784 0.8950 16 6 5.3910 -3.5547 2.0963 17 6 5.6626 -5.0441 2.3169 18 6 4.3422 -5.7692 2.5841 19 6 3.4113 -5.5930 1.3828 20 1 3.8824 -6.0119 0.4936 21 9 2.2036 -6.2556 1.6274 22 1 -0.4850 0.8400 0.0004 23 1 2.3173 -4.5357 -0.7470 24 1 4.9314 -3.7976 0.0060 25 1 4.2665 -2.3173 0.7375 26 1 4.9199 -3.1357 2.9855 27 1 6.3315 -3.0377 1.9061 28 1 6.3254 -5.1697 3.1731 29 1 6.1337 -5.4631 1.4277 30 1 3.8711 -5.3503 3.4733 31 1 4.5357 -6.8303 2.7417 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192987597.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:16 Heat of formation + Delta-G solvation = -194.894626 kcal Electronic energy + Delta-G solvation = -17564.409886 eV Core-core repulsion = 14498.254591 eV Total energy + Delta-G solvation = -3066.155296 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.59150 -39.28290 -37.39391 -36.15797 -35.28895 -34.94440 -31.21488 -29.39915 -28.25876 -23.60406 -23.20893 -21.27230 -20.86835 -19.31150 -18.38455 -17.70468 -17.01764 -16.90052 -16.10240 -15.96444 -15.74851 -15.44426 -14.91530 -14.44784 -14.11419 -14.00403 -13.60079 -13.33247 -12.99168 -12.94267 -12.56148 -12.51582 -12.46196 -12.30585 -12.16774 -11.99033 -11.66520 -11.36575 -11.22278 -11.09229 -10.85321 -10.20545 -8.74577 -7.47638 0.33415 1.35085 1.37519 1.50186 2.21165 2.59399 2.89940 3.41345 3.60997 3.73625 3.82194 3.93770 4.18862 4.23398 4.30485 4.42904 4.51982 4.64597 4.77332 4.84066 5.00612 5.16051 5.19504 5.24168 5.30802 5.35950 5.45139 5.56922 5.95478 6.34400 6.79121 8.22263 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.027060 B = 0.008858 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.470662 B = 3160.302466 C = 3897.741614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.068 3.932 3 Si 0.991 3.009 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.247 1.247 7 C -1.032 5.032 8 H 0.131 0.869 9 S 2.714 3.286 10 O -1.048 7.048 11 O -1.047 7.047 12 N -1.117 6.117 13 C 0.124 3.876 14 H 0.071 0.929 15 C -0.141 4.141 16 C -0.122 4.122 17 C -0.109 4.109 18 C -0.141 4.141 19 C 0.083 3.917 20 H 0.113 0.887 21 F -0.231 7.231 22 H 0.298 0.702 23 H 0.415 0.585 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.465 -7.177 3.650 17.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.809 3.191 4 H -0.172 1.172 5 H -0.192 1.192 6 H -0.170 1.170 7 C -1.166 5.166 8 H 0.149 0.851 9 S 2.816 3.184 10 O -1.037 7.037 11 O -1.037 7.037 12 N -0.875 5.875 13 C 0.016 3.984 14 H 0.089 0.911 15 C -0.180 4.180 16 C -0.160 4.160 17 C -0.146 4.146 18 C -0.180 4.180 19 C 0.045 3.955 20 H 0.130 0.870 21 F -0.212 7.212 22 H 0.108 0.892 23 H 0.249 0.751 24 H 0.108 0.892 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.258 -7.169 3.817 16.409 hybrid contribution -0.089 0.816 -0.411 0.918 sum 14.168 -6.352 3.406 15.896 Atomic orbital electron populations 1.70010 1.08987 1.32370 1.41555 1.26075 0.95321 1.05537 0.87539 0.85145 0.78737 0.74277 0.80922 1.17194 1.19223 1.16998 1.30925 1.07409 1.11752 1.66520 0.85097 1.00023 0.72714 0.74270 0.71392 1.93301 1.74703 1.88338 1.47394 1.93305 1.75017 1.88495 1.46930 1.55398 1.54682 1.49653 1.27718 1.21484 0.91940 0.96742 0.88199 0.91103 1.22188 0.93805 1.01230 1.00785 1.21611 0.99637 0.97689 0.97044 1.21502 0.95444 0.93851 1.03816 1.22170 0.96183 1.03346 0.96277 1.22198 0.81233 0.89978 1.02054 0.86964 1.92786 1.49853 1.82448 1.96119 0.89189 0.75137 0.89177 0.91453 0.92314 0.89290 0.89040 0.89800 0.91437 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.24 13.19 21.45 0.28 -53.96 16 2 C 0.07 3.76 5.46 84.65 0.46 4.22 16 3 Si 0.99 40.66 29.54 68.60 2.03 42.69 16 4 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 6 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 7 C -1.03 -55.92 9.57 67.73 0.65 -55.27 16 8 H 0.13 6.16 5.61 -2.91 -0.02 6.15 16 9 S 2.71 149.71 5.00 -56.49 -0.28 149.43 16 10 O -1.05 -65.25 17.36 -128.00 -2.22 -67.47 16 11 O -1.05 -64.48 18.02 -128.00 -2.31 -66.79 16 12 N -1.12 -45.12 5.39 -169.39 -0.91 -46.03 16 13 C 0.12 4.19 2.55 44.99 0.11 4.31 16 14 H 0.07 2.80 7.50 -2.39 -0.02 2.78 16 15 C -0.14 -3.79 5.53 30.59 0.17 -3.62 16 16 C -0.12 -2.41 5.92 30.59 0.18 -2.23 16 17 C -0.11 -1.63 5.92 30.59 0.18 -1.45 16 18 C -0.14 -2.78 5.66 30.59 0.17 -2.60 16 19 C 0.08 2.22 3.43 30.59 0.11 2.32 16 20 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 21 F -0.23 -7.98 17.00 44.97 0.76 -7.22 16 22 H 0.30 16.22 8.31 -92.71 -0.77 15.45 16 23 H 0.41 14.37 8.84 -96.74 -0.85 13.51 16 24 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.07 2.12 5.74 -2.39 -0.01 2.11 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -78.64 272.00 -0.32 -78.96 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.29 Total: 24.70 kcal Atomic # 6 Polarization: -56.35 SS G_CDS: 2.03 Total: -54.31 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -0.63 Total: -99.99 kcal Atomic # 8 Polarization: -129.73 SS G_CDS: -4.53 Total: -134.26 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 0.76 Total: -7.22 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 16 Polarization: 149.71 SS G_CDS: -0.28 Total: 149.43 kcal Total: -78.64 -0.32 -78.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987597.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.934 kcal (2) G-P(sol) polarization free energy of solvation -78.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds