Wall clock time and date at job start Mon Mar 30 2020 18:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99903 * 2 1 4 4 H 1.48499 * 109.46920 * 270.00283 * 3 2 1 5 5 H 1.48497 * 109.46869 * 30.00025 * 3 2 1 6 6 H 1.48496 * 109.46812 * 150.00163 * 3 2 1 7 7 C 1.37877 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00081 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00116 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.40559 * 66.45682 * 9 7 2 11 11 O 1.42107 * 106.40587 * 293.53933 * 9 7 2 12 12 N 1.65595 * 107.21911 * 180.02562 * 9 7 2 13 13 C 1.46500 * 120.00152 * 64.99816 * 12 9 7 14 14 H 1.09000 * 109.47175 * 25.00197 * 13 12 9 15 15 C 1.52997 * 109.47204 * 265.00092 * 13 12 9 16 16 C 1.53002 * 109.47415 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.46972 * 59.99860 * 16 15 13 18 18 C 1.52997 * 109.47165 * 300.00293 * 17 16 15 19 19 H 1.09002 * 109.47045 * 180.02562 * 18 17 16 20 20 F 1.39903 * 109.47485 * 299.99877 * 18 17 16 21 21 C 1.52999 * 109.47592 * 60.00300 * 18 17 16 22 22 H 0.96999 * 119.99877 * 359.97438 * 1 2 3 23 23 H 0.97009 * 120.00056 * 244.99621 * 12 9 7 24 24 H 1.09000 * 109.47140 * 300.00127 * 15 13 12 25 25 H 1.09001 * 109.47230 * 59.99271 * 15 13 12 26 26 H 1.08992 * 109.46974 * 180.02562 * 16 15 13 27 27 H 1.08996 * 109.46550 * 300.00288 * 16 15 13 28 28 H 1.09000 * 109.47054 * 60.00300 * 17 16 15 29 29 H 1.09001 * 109.46997 * 180.02562 * 17 16 15 30 30 H 1.08993 * 109.47839 * 180.02562 * 21 18 17 31 31 H 1.09000 * 109.47160 * 59.99666 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4518 -2.7956 -1.2494 11 8 0.4509 -2.7951 1.2501 12 7 2.2483 -3.9354 0.0019 13 6 3.1385 -4.1083 1.1525 14 1 2.6666 -3.6926 2.0428 15 6 4.4592 -3.3822 0.8892 16 6 5.3892 -3.5633 2.0906 17 6 5.6606 -5.0536 2.3053 18 6 4.3399 -5.7797 2.5686 19 1 4.5333 -6.8414 2.7221 20 9 3.7343 -5.2466 3.7116 21 6 3.4099 -5.5987 1.3673 22 1 -0.4850 0.8400 0.0004 23 1 2.3177 -4.5329 -0.7591 24 1 4.9312 -3.7979 -0.0010 25 1 4.2658 -2.3205 0.7357 26 1 6.3299 -3.0456 1.9031 27 1 4.9174 -3.1479 2.9810 28 1 6.1323 -5.4690 1.4148 29 1 6.3228 -5.1826 3.1615 30 1 2.4689 -6.1156 1.5550 31 1 3.8817 -6.0141 0.4768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192987774.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:20 Heat of formation + Delta-G solvation = -165.806208 kcal Electronic energy + Delta-G solvation = -17519.428918 eV Core-core repulsion = 14454.534991 eV Total energy + Delta-G solvation = -3064.893927 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.49702 -37.95101 -35.13906 -33.90597 -33.47874 -33.00028 -30.35987 -28.33758 -26.11301 -22.55372 -22.09317 -19.70541 -18.90834 -17.41963 -16.71557 -16.16582 -15.35175 -15.18072 -14.82928 -14.54342 -14.14322 -14.02722 -13.46008 -13.29331 -12.55010 -12.25957 -12.01229 -11.84244 -11.57549 -11.21050 -11.18943 -11.03320 -10.73338 -10.59524 -10.46882 -10.25652 -10.18487 -10.11652 -9.78092 -9.22137 -8.91455 -8.49292 -6.67301 -5.28648 2.38303 3.08111 3.15046 3.20901 4.07556 4.50624 4.59192 4.67557 4.73571 4.80357 5.02790 5.19047 5.34334 5.47482 5.53889 5.56400 5.74230 5.84055 5.94588 6.03251 6.14002 6.21787 6.31262 6.45957 6.55303 6.69900 6.94357 7.37235 7.94873 8.02295 8.92125 10.27078 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.008311 C = 0.007163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.719562 B = 3368.190839 C = 3907.918215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.019 5.019 8 H 0.105 0.895 9 S 2.713 3.287 10 O -1.009 7.009 11 O -1.006 7.006 12 N -1.132 6.132 13 C 0.159 3.841 14 H 0.097 0.903 15 C -0.146 4.146 16 C -0.120 4.120 17 C -0.145 4.145 18 C 0.095 3.905 19 H 0.081 0.919 20 F -0.210 7.210 21 C -0.151 4.151 22 H 0.290 0.710 23 H 0.400 0.600 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.677 -8.526 2.783 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.153 5.153 8 H 0.123 0.877 9 S 2.813 3.187 10 O -0.999 6.999 11 O -0.996 6.996 12 N -0.885 5.885 13 C 0.051 3.949 14 H 0.115 0.885 15 C -0.185 4.185 16 C -0.159 4.159 17 C -0.183 4.183 18 C 0.058 3.942 19 H 0.099 0.901 20 F -0.191 7.191 21 C -0.191 4.191 22 H 0.101 0.899 23 H 0.230 0.770 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.493 -8.449 2.976 13.796 hybrid contribution 1.024 0.961 -0.348 1.447 sum 11.517 -7.488 2.627 13.986 Atomic orbital electron populations 1.69902 1.06793 1.30659 1.40176 1.24741 0.94426 1.00772 0.88541 0.86191 0.80211 0.80236 0.79086 1.19284 1.20022 1.18632 1.30645 1.06072 1.11796 1.66747 0.87651 1.00445 0.72120 0.73335 0.72794 1.93371 1.73187 1.87698 1.45661 1.93366 1.72824 1.87503 1.45934 1.56054 1.55263 1.50951 1.26183 1.20505 0.90506 0.94145 0.89776 0.88528 1.22262 0.95464 1.03072 0.97706 1.21495 0.99868 0.94951 0.99551 1.22157 0.96241 0.97239 1.02674 1.21525 0.92694 0.97492 0.82504 0.90124 1.92825 1.85152 1.88503 1.52612 1.22445 1.00488 0.98184 0.97954 0.89939 0.76956 0.91732 0.89503 0.91485 0.90965 0.90287 0.91081 0.90199 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.02 13.19 55.43 0.73 -24.29 16 2 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 3 Si 0.92 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.21 16 7 C -1.02 -27.69 9.57 30.60 0.29 -27.40 16 8 H 0.11 2.57 5.62 -52.49 -0.29 2.28 16 9 S 2.71 72.04 5.00 -107.50 -0.54 71.51 16 10 O -1.01 -29.67 18.02 -57.17 -1.03 -30.70 16 11 O -1.01 -29.82 17.35 -57.17 -0.99 -30.81 16 12 N -1.13 -22.18 5.47 -4.89 -0.03 -22.21 16 13 C 0.16 2.74 2.67 -67.93 -0.18 2.56 16 14 H 0.10 1.93 7.16 -51.93 -0.37 1.56 16 15 C -0.15 -2.22 5.53 -26.73 -0.15 -2.37 16 16 C -0.12 -1.53 5.80 -26.73 -0.16 -1.69 16 17 C -0.15 -1.51 5.72 -26.73 -0.15 -1.66 16 18 C 0.09 1.12 4.12 -26.73 -0.11 1.01 16 19 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 20 F -0.21 -3.19 16.05 2.25 0.04 -3.15 16 21 C -0.15 -2.00 5.25 -26.73 -0.14 -2.14 16 22 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16 23 H 0.40 6.64 8.84 -34.47 -0.30 6.34 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.09 1.51 5.74 -51.93 -0.30 1.22 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.01 7.80 -51.93 -0.41 0.60 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 270.52 15.07 4.08 4.08 Total: -1.00 -35.01 270.52 -7.22 -42.23 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -3.77 Total: 5.89 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: -0.69 Total: -28.08 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.70 Total: -46.50 kcal Atomic # 8 Polarization: -59.49 SS G_CDS: -2.02 Total: -61.51 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.04 Total: -3.15 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 72.04 SS G_CDS: -0.54 Total: 71.51 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -35.01 -7.22 -42.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987774.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.573 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds