Wall clock time and date at job start Mon Mar 30 2020 18:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00244 * 2 1 4 4 H 1.48499 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47118 * 300.00153 * 3 2 1 6 6 H 1.48500 * 109.46968 * 60.00179 * 3 2 1 7 7 C 1.37877 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99902 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00134 * 359.97438 * 7 2 1 10 10 O 1.42096 * 106.40353 * 66.45986 * 9 7 2 11 11 O 1.42107 * 106.40247 * 293.54683 * 9 7 2 12 12 N 1.65598 * 107.22094 * 180.02562 * 9 7 2 13 13 C 1.46499 * 120.00175 * 64.99700 * 12 9 7 14 14 H 1.09001 * 109.46813 * 25.00333 * 13 12 9 15 15 C 1.53000 * 109.46840 * 145.00059 * 13 12 9 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47127 * 300.00449 * 16 15 13 18 18 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 19 19 F 1.39900 * 109.46764 * 299.99647 * 17 16 15 20 20 C 1.52997 * 109.47164 * 59.99836 * 17 16 15 21 21 C 1.52996 * 109.47185 * 265.00178 * 13 12 9 22 22 H 0.97006 * 120.00221 * 359.97438 * 1 2 3 23 23 H 0.97000 * 119.99659 * 245.00146 * 12 9 7 24 24 H 1.09002 * 109.47398 * 300.00326 * 15 13 12 25 25 H 1.09001 * 109.47194 * 60.00507 * 15 13 12 26 26 H 1.08998 * 109.47533 * 59.99948 * 16 15 13 27 27 H 1.08996 * 109.47853 * 180.02562 * 16 15 13 28 28 H 1.09002 * 109.47045 * 180.02562 * 20 17 16 29 29 H 1.09001 * 109.47375 * 59.99966 * 20 17 16 30 30 H 1.08992 * 109.47554 * 299.99819 * 21 13 12 31 31 H 1.09004 * 109.47108 * 60.00069 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2500 11 8 0.4517 -2.7955 1.2494 12 7 2.2482 -3.9355 -0.0005 13 6 3.1393 -4.1089 1.1493 14 1 2.6680 -3.6936 2.0401 15 6 3.4108 -5.5993 1.3637 16 6 4.3409 -5.7806 2.5649 17 6 5.6616 -5.0542 2.3015 18 1 6.3240 -5.1829 3.1575 19 9 6.2669 -5.5871 1.1584 20 6 5.3899 -3.5638 2.0871 21 6 4.4598 -3.3827 0.8852 22 1 -0.4851 0.8401 0.0004 23 1 2.3170 -4.5325 -0.7619 24 1 2.4700 -6.1167 1.5518 25 1 3.8821 -6.0146 0.4729 26 1 3.8694 -5.3653 3.4556 27 1 4.5348 -6.8422 2.7175 28 1 6.3307 -3.0465 1.8990 29 1 4.9183 -3.1486 2.9777 30 1 4.9311 -3.7980 -0.0055 31 1 4.2663 -2.3209 0.7324 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988276.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:24 Heat of formation + Delta-G solvation = -166.671226 kcal Electronic energy + Delta-G solvation = -17449.715273 eV Core-core repulsion = 14384.783836 eV Total energy + Delta-G solvation = -3064.931437 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.56156 -37.96918 -35.14982 -33.92077 -33.31150 -32.96850 -30.78572 -28.04301 -26.13459 -22.65919 -22.02806 -19.72212 -18.89379 -17.38490 -16.58305 -16.13331 -15.69041 -15.24040 -15.02300 -14.82754 -14.05660 -13.55237 -13.36109 -13.16811 -12.51439 -12.23765 -12.10236 -11.99757 -11.81887 -11.23824 -11.22081 -11.02571 -10.61998 -10.55966 -10.49994 -10.27181 -10.18013 -10.13773 -9.80928 -9.25004 -8.90944 -8.48625 -6.69211 -5.30411 2.38054 3.05239 3.13998 3.20453 4.06243 4.52793 4.59653 4.65688 4.72710 4.82647 4.96621 5.24543 5.28094 5.48315 5.55051 5.58725 5.77022 5.91633 5.94714 5.99843 6.07860 6.24295 6.30505 6.44438 6.54088 6.70157 6.96345 7.35593 7.95496 8.01971 8.90570 10.25048 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.028119 B = 0.008015 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.533844 B = 3492.568778 C = 4129.075658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.272 1.272 7 C -1.019 5.019 8 H 0.106 0.894 9 S 2.714 3.286 10 O -1.009 7.009 11 O -1.009 7.009 12 N -1.132 6.132 13 C 0.159 3.841 14 H 0.091 0.909 15 C -0.125 4.125 16 C -0.143 4.143 17 C 0.090 3.910 18 H 0.079 0.921 19 F -0.215 7.215 20 C -0.144 4.144 21 C -0.147 4.147 22 H 0.290 0.710 23 H 0.401 0.599 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.683 -7.370 5.007 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.742 3.258 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.197 1.197 7 C -1.153 5.153 8 H 0.124 0.876 9 S 2.814 3.186 10 O -0.999 6.999 11 O -0.998 6.998 12 N -0.885 5.885 13 C 0.051 3.949 14 H 0.109 0.891 15 C -0.164 4.164 16 C -0.182 4.182 17 C 0.054 3.946 18 H 0.097 0.903 19 F -0.196 7.196 20 C -0.183 4.183 21 C -0.186 4.186 22 H 0.100 0.900 23 H 0.232 0.768 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.532 -7.320 5.141 13.072 hybrid contribution 1.092 0.969 -0.417 1.518 sum 10.623 -6.351 4.723 13.248 Atomic orbital electron populations 1.69910 1.06790 1.30557 1.40278 1.24741 0.94418 1.00780 0.88541 0.86166 0.80469 0.80597 0.78526 1.18606 1.19672 1.19672 1.30690 1.06129 1.11815 1.66634 0.87604 1.00414 0.72113 0.73313 0.72783 1.93371 1.73199 1.87678 1.45652 1.93354 1.72929 1.87577 1.45990 1.56029 1.55102 1.50935 1.26389 1.20565 0.90019 0.94887 0.89455 0.89059 1.21804 0.99635 0.96711 0.98289 1.22113 0.95114 1.01015 0.99934 1.21604 0.93986 0.94068 0.84930 0.90301 1.92781 1.84997 1.87909 1.53890 1.22133 1.00991 0.94453 1.00711 1.22226 0.95430 1.03148 0.97786 0.89994 0.76832 0.90884 0.91119 0.89754 0.90858 0.90844 0.89775 0.91193 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.77 13.19 55.43 0.73 -24.03 16 2 C 0.13 3.67 5.46 -17.82 -0.10 3.57 16 3 Si 0.92 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 7 C -1.02 -27.41 9.57 30.60 0.29 -27.11 16 8 H 0.11 2.57 5.61 -52.49 -0.29 2.28 16 9 S 2.71 71.23 5.00 -107.50 -0.54 70.69 16 10 O -1.01 -29.62 18.02 -57.17 -1.03 -30.65 16 11 O -1.01 -29.11 17.35 -57.17 -0.99 -30.11 16 12 N -1.13 -22.24 5.47 -4.89 -0.03 -22.27 16 13 C 0.16 2.68 2.79 -67.93 -0.19 2.49 16 14 H 0.09 1.64 7.50 -51.93 -0.39 1.25 16 15 C -0.13 -1.69 5.33 -26.73 -0.14 -1.84 16 16 C -0.14 -1.56 5.72 -26.73 -0.15 -1.72 16 17 C 0.09 1.00 4.12 -26.73 -0.11 0.89 16 18 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 19 F -0.21 -2.89 16.05 2.25 0.04 -2.85 16 20 C -0.14 -1.76 5.72 -26.71 -0.15 -1.92 16 21 C -0.15 -2.28 5.41 -26.71 -0.14 -2.42 16 22 H 0.29 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.40 6.91 8.84 -34.46 -0.30 6.60 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 0.94 7.80 -51.93 -0.41 0.53 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.07 7.80 -51.93 -0.41 0.66 16 31 H 0.09 1.52 5.74 -51.93 -0.30 1.23 16 LS Contribution 270.52 15.07 4.08 4.08 Total: -1.00 -34.43 270.52 -7.23 -41.66 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.77 Total: 6.21 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: -0.70 Total: -28.06 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.70 Total: -46.30 kcal Atomic # 8 Polarization: -58.74 SS G_CDS: -2.02 Total: -60.76 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 71.23 SS G_CDS: -0.54 Total: 70.69 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -34.43 -7.23 -41.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988276.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.010 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds