Wall clock time and date at job start Mon Mar 30 2020 18:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37579 * 120.02321 * 2 1 4 4 C 1.39154 * 120.24608 * 179.97438 * 3 2 1 5 5 O 1.35712 * 119.85740 * 180.02562 * 4 3 2 6 6 C 1.38744 * 120.28241 * 0.02589 * 4 3 2 7 7 C 1.38385 * 120.04039 * 359.71000 * 6 4 3 8 8 O 1.35658 * 120.12470 * 180.30023 * 7 6 4 9 9 C 1.39872 * 120.02126 * 179.97438 * 2 1 3 10 10 C 1.47205 * 120.13787 * 0.02562 * 9 2 1 11 11 O 1.21653 * 120.00106 * 90.00316 * 10 9 2 12 12 N 1.34781 * 120.00416 * 270.00120 * 10 9 2 13 13 C 1.46503 * 119.99736 * 0.02562 * 12 10 9 14 14 C 1.36920 * 120.00143 * 180.02562 * 12 10 9 15 15 H 1.07998 * 120.00613 * 21.21298 * 14 12 10 16 16 C 1.39004 * 119.99896 * 201.21588 * 14 12 10 17 17 N 1.31394 * 119.99988 * 12.00442 * 16 14 12 18 18 Si 1.86799 * 119.99910 * 192.00942 * 16 14 12 19 19 H 1.48505 * 109.47312 * 85.05901 * 18 16 14 20 20 H 1.48504 * 109.47157 * 205.05296 * 18 16 14 21 21 H 1.48499 * 109.47580 * 325.06003 * 18 16 14 22 22 H 1.09002 * 109.47069 * 270.02330 * 1 2 3 23 23 H 1.09002 * 109.46798 * 30.01779 * 1 2 3 24 24 H 1.08991 * 109.47484 * 150.01878 * 1 2 3 25 25 H 1.07999 * 119.87794 * 359.97438 * 3 2 1 26 26 H 0.96704 * 114.00300 * 90.00680 * 5 4 3 27 27 H 1.08003 * 119.98249 * 179.97438 * 6 4 3 28 28 H 0.96706 * 113.99905 * 270.24077 * 8 7 6 29 29 H 1.08996 * 109.47181 * 92.69189 * 13 12 10 30 30 H 1.08994 * 109.46752 * 212.69669 * 13 12 10 31 31 H 1.09007 * 109.46707 * 332.69215 * 13 12 10 32 32 H 0.97000 * 120.00134 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1912 0.0000 4 6 3.5869 1.1966 0.0005 5 8 4.2579 2.3762 0.0011 6 6 4.2912 0.0012 0.0005 7 6 3.6107 -1.2038 0.0061 8 8 4.2976 -2.3736 0.0122 9 6 2.2068 -1.2111 0.0005 10 6 1.4743 -2.4879 0.0005 11 8 1.1721 -3.0158 -1.0530 12 7 1.1385 -3.0723 1.1677 13 6 1.5019 -2.4363 2.4365 14 6 0.4576 -4.2602 1.1677 15 1 0.4832 -4.8973 0.2960 16 6 -0.2666 -4.6462 2.2896 17 7 -0.4960 -3.7824 3.2527 18 14 -0.9137 -6.3931 2.4280 19 1 0.1458 -7.2706 2.9874 20 1 -2.0972 -6.4130 3.3248 21 1 -1.3039 -6.8847 1.0822 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8899 -0.5141 24 1 -0.3634 -0.8901 -0.5135 25 1 1.6538 2.1256 -0.0004 26 1 4.4522 2.7179 0.8846 27 1 5.3712 0.0111 0.0005 28 1 4.5005 -2.7152 -0.8694 29 1 0.6807 -1.8045 2.7746 30 1 1.7010 -3.2043 3.1838 31 1 2.3947 -1.8271 2.2949 32 1 -1.0011 -4.0518 4.0358 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193931268.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:32 Heat of formation + Delta-G solvation = -86.110000 kcal Electronic energy + Delta-G solvation = -18716.559576 eV Core-core repulsion = 15643.137889 eV Total energy + Delta-G solvation = -3073.421687 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.12568 -38.26321 -37.32434 -35.82287 -34.61725 -31.71893 -31.47777 -29.31556 -26.92241 -26.22129 -24.58389 -22.65269 -21.52412 -19.47155 -18.31253 -17.07959 -16.97430 -16.40544 -16.30051 -15.17715 -14.79483 -14.49342 -14.07367 -13.65958 -13.45081 -13.08899 -12.86103 -12.45624 -12.36229 -11.63773 -11.60183 -11.38582 -11.22246 -11.03961 -10.84817 -10.56784 -10.45215 -10.37135 -10.26758 -9.05277 -8.58370 -8.44788 -8.12321 -7.71533 -6.33836 -3.88734 1.27475 1.44140 3.15559 3.24308 3.29361 3.60243 3.80367 4.08027 4.13489 4.63374 4.85875 5.02422 5.13108 5.27352 5.56843 5.59439 5.69916 5.98279 6.05259 6.08357 6.36502 6.43953 6.45789 6.55976 6.76023 6.84512 6.95151 7.24652 7.54389 7.65730 7.92323 8.09601 8.46050 9.14679 9.39827 9.95478 10.69109 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.034430 B = 0.006623 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.055726 B = 4226.608643 C = 4428.919473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.025 4.025 3 C -0.157 4.157 4 C 0.118 3.882 5 O -0.499 6.499 6 C -0.183 4.183 7 C 0.147 3.853 8 O -0.489 6.489 9 C -0.116 4.116 10 C 0.489 3.511 11 O -0.590 6.590 12 N -0.426 5.426 13 C 0.116 3.884 14 C -0.306 4.306 15 H 0.100 0.900 16 C 0.031 3.969 17 N -0.879 5.879 18 Si 0.929 3.071 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.269 1.269 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.130 0.870 26 H 0.388 0.612 27 H 0.133 0.867 28 H 0.393 0.607 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.294 9.256 -0.858 11.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.026 4.026 3 C -0.176 4.176 4 C 0.074 3.926 5 O -0.309 6.309 6 C -0.202 4.202 7 C 0.101 3.899 8 O -0.299 6.299 9 C -0.120 4.120 10 C 0.276 3.724 11 O -0.476 6.476 12 N -0.142 5.142 13 C -0.027 4.027 14 C -0.434 4.434 15 H 0.118 0.882 16 C -0.172 4.172 17 N -0.518 5.518 18 Si 0.755 3.245 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.193 1.193 22 H 0.097 0.903 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.148 0.852 26 H 0.244 0.756 27 H 0.150 0.850 28 H 0.250 0.750 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.960 8.961 -1.139 10.822 hybrid contribution -0.126 -0.707 0.377 0.811 sum 5.834 8.253 -0.762 10.136 Atomic orbital electron populations 1.20857 0.90108 1.03307 1.03226 1.19721 0.96536 0.90734 0.95645 1.21153 0.93152 0.98134 1.05124 1.18213 0.89617 0.84549 1.00248 1.84758 1.76939 1.35742 1.33470 1.21471 1.00684 0.91276 1.06805 1.18242 0.88427 0.85249 0.97972 1.84731 1.75128 1.36377 1.33654 1.20644 0.93164 0.95584 1.02606 1.17517 0.85409 0.84587 0.84858 1.90639 1.60452 1.65474 1.31073 1.43479 1.47126 1.19643 1.03916 1.21473 0.96933 0.97594 0.86745 1.19677 1.26375 0.95101 1.02255 0.88192 1.25366 0.96123 0.99705 0.96021 1.70010 1.38864 1.33766 1.09181 0.85905 0.78164 0.81922 0.78495 1.20246 1.20916 1.19347 0.90287 0.91542 0.90225 0.85162 0.75596 0.84958 0.75016 0.92453 0.91229 0.95578 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 9.62 36.00 0.35 -1.70 16 2 C -0.03 -0.46 5.91 -104.25 -0.62 -1.07 16 3 C -0.16 -2.36 9.61 -39.48 -0.38 -2.74 16 4 C 0.12 1.71 6.70 -39.05 -0.26 1.45 16 5 O -0.50 -5.92 13.48 -18.84 -0.25 -6.18 16 6 C -0.18 -2.81 9.91 -39.34 -0.39 -3.20 16 7 C 0.15 2.69 6.28 -38.72 -0.24 2.44 16 8 O -0.49 -8.71 12.95 -18.67 -0.24 -8.96 16 9 C -0.12 -2.41 3.89 -104.83 -0.41 -2.81 16 10 C 0.49 12.36 5.05 -12.62 -0.06 12.30 16 11 O -0.59 -16.83 16.78 5.23 0.09 -16.75 16 12 N -0.43 -11.20 3.02 -123.50 -0.37 -11.58 16 13 C 0.12 2.76 8.54 59.85 0.51 3.27 16 14 C -0.31 -8.61 9.31 -15.00 -0.14 -8.75 16 15 H 0.10 2.94 7.38 -52.49 -0.39 2.55 16 16 C 0.03 0.83 5.11 -17.45 -0.09 0.74 16 17 N -0.88 -23.30 10.56 55.50 0.59 -22.72 16 18 Si 0.93 20.74 29.57 -169.99 -5.03 15.71 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 23 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 24 H 0.08 1.63 7.08 -51.93 -0.37 1.26 16 25 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 26 H 0.39 2.66 9.06 45.56 0.41 3.07 16 27 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 28 H 0.39 5.41 9.06 45.56 0.41 5.82 16 29 H 0.06 1.38 7.54 -51.93 -0.39 0.99 16 30 H 0.07 1.72 7.02 -51.93 -0.36 1.36 16 31 H 0.03 0.56 6.44 -51.93 -0.33 0.22 16 32 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 281.83 15.07 4.25 4.25 Total: -1.00 -33.26 281.83 -4.55 -37.81 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -1.84 Total: 8.48 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.73 Total: -0.08 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.21 Total: -34.29 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.41 Total: -31.88 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.26 -4.55 -37.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193931268.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.301 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds