Wall clock time and date at job start Mon Mar 30 2020 18:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99987 * 2 1 4 4 H 1.48497 * 109.47329 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46936 * 120.00401 * 3 2 1 6 6 H 1.48501 * 109.47089 * 240.00125 * 3 2 1 7 7 C 1.38816 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00031 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.47427 * 125.65057 * 359.70375 * 9 7 2 11 11 C 1.55127 * 104.72425 * 155.81211 * 10 9 7 12 12 C 1.55156 * 101.48506 * 37.29265 * 11 10 9 13 13 H 1.09001 * 110.87380 * 82.76484 * 12 11 10 14 14 O 1.42904 * 110.71783 * 205.96973 * 12 11 10 15 15 C 1.36030 * 116.99539 * 198.55384 * 14 12 11 16 16 C 1.36628 * 120.52858 * 354.64968 * 15 14 12 17 17 C 1.40610 * 118.95579 * 179.75677 * 16 15 14 18 18 C 1.34855 * 119.97969 * 0.49594 * 17 16 15 19 19 O 1.34147 * 121.07640 * 359.77088 * 18 17 16 20 20 C 1.34294 * 121.07225 * 359.97438 * 19 18 17 21 21 O 1.21935 * 120.02027 * 179.97438 * 20 19 18 22 22 C 1.47022 * 125.64462 * 180.02562 * 9 7 2 23 23 H 0.97001 * 119.99830 * 359.97438 * 1 2 3 24 24 H 1.09007 * 110.36144 * 274.74137 * 10 9 7 25 25 H 1.09000 * 110.36319 * 37.05846 * 10 9 7 26 26 H 1.08996 * 111.19029 * 279.19160 * 11 10 9 27 27 H 1.08999 * 110.93857 * 155.28390 * 11 10 9 28 28 H 1.08002 * 120.51525 * 359.97438 * 16 15 14 29 29 H 1.07997 * 120.00946 * 180.25862 * 17 16 15 30 30 H 1.08001 * 119.46697 * 179.75200 * 18 17 16 31 31 H 1.09004 * 109.88362 * 300.44400 * 22 9 7 32 32 H 1.08994 * 109.88350 * 61.45988 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6963 1.2124 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1416 -2.5332 0.0062 11 6 -0.4022 -3.9322 -0.6112 12 6 0.7783 -4.7524 -0.0273 13 1 0.5488 -5.1004 0.9799 14 8 1.0995 -5.8534 -0.8798 15 6 1.8258 -6.8657 -0.3338 16 6 2.3122 -6.7630 0.9388 17 6 3.0544 -7.8315 1.4722 18 6 3.2846 -8.9309 0.7260 19 8 2.8118 -9.0298 -0.5255 20 6 2.0936 -8.0372 -1.0756 21 8 1.6736 -8.1472 -2.2150 22 6 1.9318 -3.7274 -0.0005 23 1 -0.4850 0.8401 0.0004 24 1 -0.5224 -2.4893 1.0266 25 1 -0.6023 -1.7573 -0.6052 26 1 -0.3535 -3.8979 -1.6995 27 1 -1.3593 -4.3331 -0.2774 28 1 2.1264 -5.8764 1.5270 29 1 3.4433 -7.7701 2.4779 30 1 3.8591 -9.7450 1.1426 31 1 2.5578 -3.8510 -0.8843 32 1 2.5308 -3.8632 0.8999 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229089058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:56 Heat of formation + Delta-G solvation = -38.169758 kcal Electronic energy + Delta-G solvation = -18239.265757 eV Core-core repulsion = 15167.922916 eV Total energy + Delta-G solvation = -3071.342842 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.03898 -39.38614 -37.80786 -36.48047 -34.25578 -32.35668 -30.03382 -29.21379 -27.66097 -25.11390 -24.25258 -24.01210 -20.58619 -20.39978 -18.77668 -18.17708 -17.36916 -16.95219 -16.89180 -15.95637 -15.08504 -14.85203 -14.75675 -14.26658 -13.73151 -13.26664 -12.85839 -12.81207 -12.49482 -12.39868 -11.86263 -11.56747 -11.08430 -11.02344 -10.83514 -10.63286 -10.24587 -10.22288 -10.05236 -9.91208 -9.67895 -8.73980 -7.95942 -6.95909 -5.73976 -3.17057 0.46547 1.50524 2.14245 3.18774 3.23087 3.36961 3.41316 3.42707 4.21987 4.42252 4.53721 4.67561 4.89197 5.10217 5.18133 5.41519 5.46964 5.59375 5.64580 5.81057 5.90560 6.18673 6.32194 6.38433 6.45557 6.51452 6.91040 7.24905 7.35633 7.52133 7.55024 7.74393 8.25157 9.11881 9.72124 10.34585 11.30181 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.040533 B = 0.004943 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.636487 B = 5663.363978 C = 5941.974238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.918 3.082 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.152 3.848 11 C -0.134 4.134 12 C 0.066 3.934 13 H 0.079 0.921 14 O -0.274 6.274 15 C 0.014 3.986 16 C -0.152 4.152 17 C -0.195 4.195 18 C 0.044 3.956 19 O -0.249 6.249 20 C 0.504 3.496 21 O -0.451 6.451 22 C 0.117 3.883 23 H 0.255 0.745 24 H 0.018 0.982 25 H 0.116 0.884 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.196 0.804 31 H 0.037 0.963 32 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.129 -15.330 5.029 16.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.748 3.252 4 H -0.214 1.214 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.027 3.973 11 C -0.172 4.172 12 C 0.010 3.990 13 H 0.096 0.904 14 O -0.186 6.186 15 C -0.035 4.035 16 C -0.172 4.172 17 C -0.214 4.214 18 C -0.020 4.020 19 O -0.158 6.158 20 C 0.352 3.648 21 O -0.340 6.340 22 C -0.009 4.009 23 H 0.065 0.935 24 H 0.036 0.964 25 H 0.134 0.866 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.168 0.832 29 H 0.171 0.829 30 H 0.213 0.787 31 H 0.054 0.946 32 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.824 -15.276 4.145 16.283 hybrid contribution 0.599 1.045 0.622 1.356 sum 4.423 -14.231 4.767 15.646 Atomic orbital electron populations 1.69728 1.04954 1.25176 1.57223 1.24801 0.95760 0.97811 1.02001 0.86102 0.78409 0.82718 0.77961 1.21438 1.21145 1.21021 1.19034 0.90555 0.82173 1.43755 0.90381 1.44359 1.01885 0.99339 1.87138 1.22086 0.84825 0.91819 0.98526 1.23258 0.94587 0.97439 1.01947 1.23862 0.97975 0.83970 0.93215 0.90360 1.86279 1.65811 1.27133 1.39356 1.20172 0.98583 0.91327 0.93380 1.21744 0.99157 1.01271 0.95049 1.21034 1.04056 0.93773 1.02537 1.23647 0.97597 0.99843 0.80870 1.83581 1.58283 1.44654 1.29325 1.18354 0.78542 0.81256 0.86627 1.91064 1.47693 1.78819 1.16379 1.21736 0.93710 0.86591 0.98871 0.93454 0.96402 0.86616 0.90453 0.91263 0.83187 0.82918 0.78727 0.94555 0.95587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.08 55.49 0.56 -25.80 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.27 10.27 -15.06 -0.15 -6.43 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.60 -15.25 3.39 -169.93 -0.58 -15.83 16 10 C 0.15 3.61 5.91 -2.41 -0.01 3.60 16 11 C -0.13 -2.59 6.82 -24.47 -0.17 -2.76 16 12 C 0.07 1.19 2.77 -24.89 -0.07 1.12 16 13 H 0.08 1.24 6.62 -51.93 -0.34 0.90 16 14 O -0.27 -5.04 9.69 -36.24 -0.35 -5.39 16 15 C 0.01 0.22 6.66 -39.03 -0.26 -0.04 16 16 C -0.15 -1.87 8.86 -39.27 -0.35 -2.22 16 17 C -0.19 -1.69 10.01 -39.89 -0.40 -2.09 16 18 C 0.04 0.35 11.36 29.53 0.34 0.69 16 19 O -0.25 -3.06 9.87 -18.48 -0.18 -3.25 16 20 C 0.50 8.00 7.96 31.86 0.25 8.25 16 21 O -0.45 -8.78 17.75 -25.47 -0.45 -9.23 16 22 C 0.12 2.46 6.52 -3.06 -0.02 2.44 16 23 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.12 3.09 5.85 -51.93 -0.30 2.79 16 26 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.15 1.83 5.40 -52.49 -0.28 1.55 16 29 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.20 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.04 0.80 8.06 -51.93 -0.42 0.39 16 32 H 0.03 0.52 7.47 -51.93 -0.39 0.13 16 LS Contribution 274.36 15.07 4.13 4.13 Total: -1.00 -32.47 274.36 -6.23 -38.70 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -3.40 Total: -2.30 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -0.94 Total: 2.25 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.02 Total: -41.63 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.99 Total: -17.87 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.47 -6.23 -38.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229089058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.526 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds