Wall clock time and date at job start Mon Mar 30 2020 18:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00226 * 2 1 4 4 H 1.48506 * 109.46882 * 85.11799 * 3 2 1 5 5 H 1.48496 * 109.47112 * 205.12097 * 3 2 1 6 6 H 1.48505 * 109.46957 * 325.12188 * 3 2 1 7 7 C 1.38818 * 120.00049 * 180.27272 * 2 1 3 8 8 H 1.07997 * 120.00278 * 172.03480 * 7 2 1 9 9 N 1.36941 * 119.99724 * 352.03454 * 7 2 1 10 10 C 1.47422 * 125.64965 * 346.56855 * 9 7 2 11 11 C 1.54911 * 104.82956 * 204.08980 * 10 9 7 12 12 C 1.55149 * 101.58140 * 322.99042 * 11 10 9 13 13 H 1.09003 * 110.72056 * 277.13422 * 12 11 10 14 14 O 1.42905 * 110.71829 * 154.04414 * 12 11 10 15 15 C 1.36025 * 116.99692 * 156.15436 * 14 12 11 16 16 C 1.36623 * 120.52621 * 6.03136 * 15 14 12 17 17 C 1.40617 * 118.95761 * 179.97438 * 16 15 14 18 18 C 1.34864 * 119.97573 * 0.02562 * 17 16 15 19 19 O 1.34138 * 121.07654 * 0.02562 * 18 17 16 20 20 C 1.34296 * 121.07458 * 359.72554 * 19 18 17 21 21 O 1.21940 * 120.02025 * 180.26186 * 20 19 18 22 22 C 1.47017 * 125.64558 * 166.25857 * 9 7 2 23 23 H 0.96994 * 119.99938 * 0.02562 * 1 2 3 24 24 H 1.09005 * 110.36663 * 322.92575 * 10 9 7 25 25 H 1.09000 * 110.36674 * 85.13916 * 10 9 7 26 26 H 1.08997 * 111.00095 * 81.06566 * 11 10 9 27 27 H 1.09002 * 111.00214 * 204.87506 * 11 10 9 28 28 H 1.08000 * 120.52422 * 0.02562 * 16 15 14 29 29 H 1.07994 * 120.01467 * 179.97438 * 17 16 15 30 30 H 1.07998 * 119.45806 * 180.02562 * 18 17 16 31 31 H 1.09005 * 109.88583 * 298.39517 * 22 9 7 32 32 H 1.09002 * 109.88723 * 59.56263 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3945 2.1059 1.3951 5 1 3.5955 1.4125 -0.5944 6 1 1.5030 2.6207 -0.8006 7 6 2.0103 -1.2022 -0.0057 8 1 3.0824 -1.2061 -0.1353 9 7 1.3354 -2.3831 0.1530 10 6 -0.0588 -2.5211 0.6118 11 6 -0.1418 -3.9502 1.2038 12 6 0.7738 -4.7428 0.2340 13 1 0.2265 -5.0322 -0.6632 14 8 1.3221 -5.8923 0.8823 15 6 1.7127 -6.9231 0.0853 16 6 1.6925 -6.7949 -1.2748 17 6 2.1039 -7.8813 -2.0672 18 6 2.5094 -9.0267 -1.4820 19 8 2.5284 -9.1531 -0.1468 20 6 2.1493 -8.1412 0.6507 21 8 2.1787 -8.2755 1.8624 22 6 1.8793 -3.7230 -0.1120 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2809 -1.7792 1.3789 25 1 -0.7464 -2.4157 -0.2273 26 1 0.2510 -3.9754 2.2203 27 1 -1.1641 -4.3271 1.1728 28 1 1.3664 -5.8735 -1.7341 29 1 2.0943 -7.7988 -3.1439 30 1 2.8240 -9.8557 -2.0986 31 1 2.1517 -3.8113 -1.1638 32 1 2.7531 -3.8993 0.5154 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229089060.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:00 Heat of formation + Delta-G solvation = -40.938545 kcal Electronic energy + Delta-G solvation = -18210.035973 eV Core-core repulsion = 15138.573068 eV Total energy + Delta-G solvation = -3071.462905 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.04667 -39.38735 -37.81432 -36.50162 -34.25827 -32.35689 -30.03108 -29.21597 -27.71402 -25.13037 -24.25186 -24.01091 -20.57815 -20.44431 -18.83828 -18.18049 -17.35847 -16.93619 -16.86766 -15.95542 -15.02731 -14.83803 -14.78005 -14.33241 -13.74747 -13.28268 -12.86834 -12.79623 -12.51566 -12.42902 -11.90034 -11.64461 -11.05701 -10.97187 -10.85134 -10.65727 -10.25552 -10.20462 -10.03712 -9.93211 -9.80995 -8.68083 -7.96561 -6.89834 -5.84016 -3.19325 0.45595 1.49775 2.13327 3.17219 3.22314 3.36211 3.41910 3.43477 4.20760 4.42871 4.53013 4.66784 4.88350 5.09064 5.16231 5.39360 5.46248 5.58832 5.64289 5.80032 5.89834 6.15331 6.30535 6.39214 6.42057 6.52248 6.90416 7.24110 7.33770 7.45293 7.54718 7.69140 8.15385 9.09191 9.70139 10.36497 11.29508 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.041789 B = 0.004848 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.870269 B = 5773.949098 C = 5976.750607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.279 1.279 6 H -0.290 1.290 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.175 3.825 11 C -0.137 4.137 12 C 0.066 3.934 13 H 0.080 0.920 14 O -0.273 6.273 15 C 0.014 3.986 16 C -0.152 4.152 17 C -0.195 4.195 18 C 0.044 3.956 19 O -0.249 6.249 20 C 0.504 3.496 21 O -0.451 6.451 22 C 0.119 3.881 23 H 0.255 0.745 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.196 0.804 31 H 0.028 0.972 32 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 -15.553 -5.605 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.744 3.256 4 H -0.214 1.214 5 H -0.205 1.205 6 H -0.216 1.216 7 C -0.362 4.362 8 H 0.095 0.905 9 N -0.326 5.326 10 C 0.050 3.950 11 C -0.175 4.175 12 C 0.010 3.990 13 H 0.098 0.902 14 O -0.186 6.186 15 C -0.035 4.035 16 C -0.172 4.172 17 C -0.214 4.214 18 C -0.019 4.019 19 O -0.158 6.158 20 C 0.352 3.648 21 O -0.340 6.340 22 C -0.008 4.008 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.169 0.831 29 H 0.171 0.829 30 H 0.213 0.787 31 H 0.045 0.955 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.617 -15.534 -4.711 16.313 hybrid contribution 0.334 1.157 -0.583 1.338 sum 1.951 -14.377 -5.294 15.445 Atomic orbital electron populations 1.69922 1.05049 1.25490 1.55964 1.24884 0.95671 0.97952 1.01510 0.86074 0.78709 0.83174 0.77640 1.21428 1.20477 1.21621 1.19029 0.90859 0.82298 1.43988 0.90549 1.44327 1.11000 0.99763 1.77468 1.21433 0.86273 0.89768 0.97548 1.23211 0.97298 0.97747 0.99288 1.23821 0.95529 0.82821 0.96824 0.90211 1.86267 1.74902 1.23480 1.33917 1.20166 1.01871 0.90709 0.90722 1.21730 1.01798 1.01380 0.92285 1.21039 1.05367 0.92955 1.02034 1.23652 0.99262 0.99711 0.79308 1.83580 1.70766 1.42869 1.18617 1.18354 0.78533 0.81607 0.86280 1.91065 1.51241 1.80853 1.10813 1.21710 0.94718 0.86549 0.97789 0.93504 0.90835 0.94735 0.90512 0.91125 0.83147 0.82895 0.78716 0.95458 0.94554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.38 10.76 55.49 0.60 -25.79 16 2 C 0.00 -0.08 5.40 -17.43 -0.09 -0.18 16 3 Si 0.91 21.76 29.56 -169.99 -5.02 16.74 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.23 -6.47 10.23 -15.06 -0.15 -6.62 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.60 -15.19 3.39 -170.07 -0.58 -15.76 16 10 C 0.17 4.12 5.38 -2.53 -0.01 4.10 16 11 C -0.14 -2.60 6.81 -24.59 -0.17 -2.77 16 12 C 0.07 1.19 2.73 -24.90 -0.07 1.12 16 13 H 0.08 1.26 6.32 -51.93 -0.33 0.93 16 14 O -0.27 -4.98 9.69 -36.22 -0.35 -5.33 16 15 C 0.01 0.21 6.71 -39.03 -0.26 -0.05 16 16 C -0.15 -1.85 8.98 -39.27 -0.35 -2.20 16 17 C -0.19 -1.67 10.01 -39.88 -0.40 -2.07 16 18 C 0.04 0.35 11.36 29.54 0.34 0.69 16 19 O -0.25 -3.03 9.87 -18.46 -0.18 -3.21 16 20 C 0.50 7.92 7.96 31.86 0.25 8.17 16 21 O -0.45 -8.71 17.75 -25.48 -0.45 -9.16 16 22 C 0.12 2.49 6.81 -3.06 -0.02 2.47 16 23 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.07 1.92 7.12 -51.93 -0.37 1.55 16 25 H 0.03 0.86 8.00 -51.93 -0.42 0.44 16 26 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.15 1.81 5.68 -52.49 -0.30 1.51 16 29 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.20 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.03 0.55 7.80 -51.93 -0.41 0.15 16 32 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 LS Contribution 276.26 15.07 4.16 4.16 Total: -1.00 -32.73 276.26 -6.24 -38.98 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -3.47 Total: -3.29 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -0.94 Total: 2.66 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.02 Total: -41.55 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.99 Total: -17.70 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.73 -6.24 -38.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229089060.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.962 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds