Wall clock time and date at job start Mon Mar 30 2020 18:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39586 * 120.45316 * 253.76806 * 3 2 1 5 5 C 1.37715 * 120.18250 * 180.02562 * 4 3 2 6 6 C 1.39806 * 121.17473 * 0.02562 * 5 4 3 7 7 C 1.48332 * 119.53864 * 179.97438 * 6 5 4 8 8 C 1.39740 * 120.91756 * 0.02562 * 7 6 5 9 9 N 1.32192 * 118.94850 * 180.02562 * 8 7 6 10 10 C 1.31828 * 120.94432 * 359.97438 * 9 8 7 11 11 N 1.31840 * 122.05556 * 0.25761 * 10 9 8 12 12 C 1.32188 * 120.93938 * 359.48060 * 11 10 9 13 13 C 1.38600 * 120.92993 * 0.25368 * 6 5 4 14 14 C 1.40618 * 119.73028 * 359.45542 * 13 6 5 15 15 C 1.40834 * 120.55179 * 180.26841 * 14 13 6 16 16 H 1.08001 * 120.00083 * 204.66108 * 15 14 13 17 17 C 1.40234 * 120.00380 * 24.66369 * 15 14 13 18 18 N 1.30664 * 119.99618 * 17.27065 * 17 15 14 19 19 Si 1.86801 * 120.00394 * 197.27034 * 17 15 14 20 20 H 1.48497 * 109.46856 * 59.99810 * 19 17 15 21 21 H 1.48496 * 109.47242 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46670 * 299.99934 * 19 17 15 23 23 H 1.08003 * 119.90584 * 359.97438 * 4 3 2 24 24 H 1.08008 * 119.40834 * 179.97438 * 5 4 3 25 25 H 1.08001 * 120.53078 * 359.97438 * 8 7 6 26 26 H 1.08002 * 118.97440 * 179.97438 * 10 9 8 27 27 H 1.07999 * 120.52075 * 180.23556 * 12 11 10 28 28 H 1.08003 * 120.13495 * 179.70024 * 13 6 5 29 29 H 0.96998 * 119.99894 * 184.59332 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2753 0.3373 1.1553 5 6 4.6524 0.3366 1.1489 6 6 5.3706 0.0027 -0.0031 7 6 6.8535 0.0143 0.0305 8 6 7.5426 0.3539 1.1978 9 7 8.8644 0.3521 1.1840 10 6 9.5305 0.0358 0.0912 11 7 8.9198 -0.2862 -1.0320 12 6 7.6001 -0.3145 -1.1041 13 6 4.7166 -0.3336 -1.1779 14 6 3.3109 -0.3514 -1.2130 15 6 2.6286 -0.6959 -2.3958 16 1 1.6214 -0.3428 -2.5606 17 6 3.2570 -1.4976 -3.3597 18 7 4.3128 -2.1977 -3.0395 19 14 2.5846 -1.5648 -5.1012 20 1 2.6104 -0.2037 -5.6945 21 1 3.4215 -2.4782 -5.9200 22 1 1.1871 -2.0662 -5.0732 23 1 2.7410 0.5999 2.0565 24 1 5.1871 0.5996 2.0498 25 1 7.0038 0.6145 2.0968 26 1 10.6102 0.0451 0.1155 27 1 7.1069 -0.5829 -2.0266 28 1 5.2842 -0.5847 -2.0618 29 1 4.7868 -2.6996 -3.7209 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240375616.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:16 Heat of formation + Delta-G solvation = 83.746758 kcal Electronic energy + Delta-G solvation = -16567.929216 eV Core-core repulsion = 13841.474742 eV Total energy + Delta-G solvation = -2726.454474 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.61841 -37.88799 -35.32145 -34.39789 -33.42891 -32.59364 -30.15237 -28.87041 -26.15188 -24.42741 -24.11158 -21.34419 -21.11616 -18.10346 -17.53685 -17.08954 -16.77397 -15.71723 -14.92202 -14.45502 -13.96892 -13.77743 -13.39445 -13.12439 -12.88679 -12.79746 -12.56202 -11.89593 -11.69505 -11.47292 -11.34599 -11.26206 -10.95689 -10.77914 -10.52856 -10.08255 -9.99115 -9.73345 -9.36095 -8.90126 -7.94675 -7.49902 -7.23266 -4.86786 0.86189 1.37854 2.22224 2.52506 2.85906 2.88094 2.98599 3.61067 3.81444 3.86707 4.30514 4.33864 4.39775 4.51989 4.91492 5.15954 5.27477 5.29864 5.38380 5.68532 5.91315 6.12285 6.16842 6.55886 6.63365 6.68993 6.81623 6.97330 7.20384 7.32031 7.48506 7.54630 7.69270 8.02917 8.26988 8.34431 8.36399 8.71861 9.61434 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.007736 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.472096 B = 3618.796174 C = 5056.875703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.298 3.702 3 C -0.182 4.182 4 C -0.024 4.024 5 C -0.237 4.237 6 C -0.019 4.019 7 C -0.115 4.115 8 C 0.140 3.860 9 N -0.522 5.522 10 C 0.263 3.737 11 N -0.519 5.519 12 C 0.147 3.853 13 C -0.136 4.136 14 C 0.148 3.852 15 C -0.424 4.424 16 H 0.088 0.912 17 C 0.077 3.923 18 N -0.764 5.764 19 Si 0.915 3.085 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.260 1.260 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.169 0.831 26 H 0.188 0.812 27 H 0.173 0.827 28 H 0.131 0.869 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.448 1.839 0.975 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.012 4.012 3 C -0.188 4.188 4 C -0.045 4.045 5 C -0.257 4.257 6 C -0.021 4.021 7 C -0.119 4.119 8 C -0.026 4.026 9 N -0.235 5.235 10 C -0.024 4.024 11 N -0.232 5.232 12 C -0.018 4.018 13 C -0.155 4.155 14 C 0.143 3.857 15 C -0.451 4.451 16 H 0.106 0.894 17 C -0.147 4.147 18 N -0.386 5.386 19 Si 0.738 3.262 20 H -0.181 1.181 21 H -0.196 1.196 22 H -0.184 1.184 23 H 0.121 0.879 24 H 0.120 0.880 25 H 0.186 0.814 26 H 0.205 0.795 27 H 0.190 0.810 28 H 0.149 0.851 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.855 1.613 0.914 7.101 hybrid contribution -0.661 -0.199 -0.758 1.025 sum 6.194 1.415 0.156 6.356 Atomic orbital electron populations 1.81035 1.12726 1.14592 1.10134 1.25771 0.92714 0.91233 0.91451 1.16978 0.83319 1.22818 0.95653 1.20382 0.93475 0.95566 0.95061 1.20062 0.93175 1.15049 0.97388 1.18210 0.88206 1.00526 0.95190 1.20875 0.96243 0.99286 0.95463 1.23383 0.89458 0.92006 0.97721 1.68315 1.09422 1.15322 1.30450 1.24782 1.00949 0.92741 0.83929 1.68357 1.11311 1.14844 1.28690 1.23536 0.88786 0.90935 0.98579 1.21394 0.93972 1.03445 0.96703 1.18314 0.91046 0.86759 0.89613 1.19794 1.01604 1.23638 1.00067 0.89442 1.26106 0.94398 0.92381 1.01768 1.69682 1.15040 1.17525 1.36374 0.86200 0.80348 0.79893 0.79795 1.18124 1.19627 1.18398 0.87888 0.88048 0.81437 0.79501 0.80993 0.85105 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.79 18.54 41.84 0.78 -11.01 15 2 C 0.30 6.70 14.28 -22.47 -0.32 6.38 15 3 C -0.18 -3.93 5.95 -104.13 -0.62 -4.54 15 4 C -0.02 -0.45 9.74 -39.27 -0.38 -0.84 15 5 C -0.24 -4.23 9.39 -39.19 -0.37 -4.60 15 6 C -0.02 -0.36 5.86 -105.02 -0.62 -0.97 15 7 C -0.11 -1.95 5.91 -104.62 -0.62 -2.56 15 8 C 0.14 2.15 10.69 -16.84 -0.18 1.97 15 9 N -0.52 -7.96 10.42 -14.30 -0.15 -8.11 15 10 C 0.26 3.79 12.27 -92.09 -1.13 2.66 15 11 N -0.52 -8.33 10.42 -14.30 -0.15 -8.48 15 12 C 0.15 2.47 10.68 -16.84 -0.18 2.29 15 13 C -0.14 -2.85 8.08 -38.55 -0.31 -3.16 15 14 C 0.15 3.36 5.73 -104.68 -0.60 2.76 15 15 C -0.42 -9.78 8.58 -37.85 -0.32 -10.11 15 16 H 0.09 2.06 7.37 -52.49 -0.39 1.67 15 17 C 0.08 1.63 5.16 -17.30 -0.09 1.55 15 18 N -0.76 -16.35 10.94 55.56 0.61 -15.74 15 19 Si 0.91 16.38 29.60 -169.99 -5.03 11.35 15 20 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 21 H -0.27 -4.68 7.11 56.52 0.40 -4.28 15 22 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 23 H 0.10 1.69 8.06 -52.48 -0.42 1.27 15 24 H 0.10 1.51 6.19 -52.48 -0.32 1.19 15 25 H 0.17 2.19 6.27 -52.49 -0.33 1.86 15 26 H 0.19 1.99 8.06 -52.49 -0.42 1.57 15 27 H 0.17 2.81 6.29 -52.49 -0.33 2.48 15 28 H 0.13 2.72 4.34 -52.48 -0.23 2.49 15 29 H 0.29 5.67 8.30 -40.82 -0.34 5.33 15 LS Contribution 268.44 15.07 4.05 4.05 Total: -1.00 -24.90 268.44 -7.22 -32.12 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -1.58 Total: 5.01 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -5.74 Total: -9.19 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 1.09 Total: -43.34 kcal Atomic # 14 Polarization: 16.38 SS G_CDS: -5.03 Total: 11.35 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -24.90 -7.22 -32.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240375616.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.868 kcal (2) G-P(sol) polarization free energy of solvation -24.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds