Wall clock time and date at job start Mon Mar 30 2020 18:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39586 * 120.45316 * 253.76806 * 3 2 1 5 5 C 1.37715 * 120.18250 * 180.02562 * 4 3 2 6 6 C 1.39806 * 121.17473 * 0.02562 * 5 4 3 7 7 C 1.48332 * 119.53864 * 179.97438 * 6 5 4 8 8 C 1.39740 * 120.91756 * 0.02562 * 7 6 5 9 9 N 1.32192 * 118.94850 * 180.02562 * 8 7 6 10 10 C 1.31828 * 120.94432 * 359.97438 * 9 8 7 11 11 N 1.31840 * 122.05556 * 0.25761 * 10 9 8 12 12 C 1.32188 * 120.93938 * 359.48060 * 11 10 9 13 13 C 1.38600 * 120.92993 * 0.25368 * 6 5 4 14 14 C 1.40618 * 119.73028 * 359.45542 * 13 6 5 15 15 C 1.40834 * 120.55179 * 180.26841 * 14 13 6 16 16 H 1.08001 * 120.00083 * 204.66108 * 15 14 13 17 17 C 1.40234 * 120.00380 * 24.66369 * 15 14 13 18 18 N 1.30664 * 119.99618 * 17.27065 * 17 15 14 19 19 Si 1.86801 * 120.00394 * 197.27034 * 17 15 14 20 20 H 1.48497 * 109.46856 * 59.99810 * 19 17 15 21 21 H 1.48496 * 109.47242 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46670 * 299.99934 * 19 17 15 23 23 H 1.08003 * 119.90584 * 359.97438 * 4 3 2 24 24 H 1.08008 * 119.40834 * 179.97438 * 5 4 3 25 25 H 1.08001 * 120.53078 * 359.97438 * 8 7 6 26 26 H 1.08002 * 118.97440 * 179.97438 * 10 9 8 27 27 H 1.07999 * 120.52075 * 180.23556 * 12 11 10 28 28 H 1.08003 * 120.13495 * 179.70024 * 13 6 5 29 29 H 0.96998 * 119.99894 * 184.59332 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2753 0.3373 1.1553 5 6 4.6524 0.3366 1.1489 6 6 5.3706 0.0027 -0.0031 7 6 6.8535 0.0143 0.0305 8 6 7.5426 0.3539 1.1978 9 7 8.8644 0.3521 1.1840 10 6 9.5305 0.0358 0.0912 11 7 8.9198 -0.2862 -1.0320 12 6 7.6001 -0.3145 -1.1041 13 6 4.7166 -0.3336 -1.1779 14 6 3.3109 -0.3514 -1.2130 15 6 2.6286 -0.6959 -2.3958 16 1 1.6214 -0.3428 -2.5606 17 6 3.2570 -1.4976 -3.3597 18 7 4.3128 -2.1977 -3.0395 19 14 2.5846 -1.5648 -5.1012 20 1 2.6104 -0.2037 -5.6945 21 1 3.4215 -2.4782 -5.9200 22 1 1.1871 -2.0662 -5.0732 23 1 2.7410 0.5999 2.0565 24 1 5.1871 0.5996 2.0498 25 1 7.0038 0.6145 2.0968 26 1 10.6102 0.0451 0.1155 27 1 7.1069 -0.5829 -2.0266 28 1 5.2842 -0.5847 -2.0618 29 1 4.7868 -2.6996 -3.7209 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240375616.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:16 Heat of formation + Delta-G solvation = 72.591700 kcal Electronic energy + Delta-G solvation = -16568.412935 eV Core-core repulsion = 13841.474742 eV Total energy + Delta-G solvation = -2726.938194 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.85529 -39.43177 -37.05944 -35.96376 -34.65352 -34.02013 -31.72314 -30.30523 -27.73051 -25.77913 -25.41033 -22.79998 -22.65444 -19.64642 -19.00057 -18.42152 -18.06734 -17.25600 -16.35696 -15.68324 -15.53850 -15.20116 -14.71118 -14.55199 -14.48958 -14.29182 -14.06310 -13.48740 -13.37659 -13.09566 -12.85724 -12.76375 -12.41380 -12.17774 -11.74622 -11.55916 -11.49920 -11.26777 -10.79355 -10.13382 -9.53011 -9.02939 -8.78275 -6.54443 -0.47044 0.14162 0.71229 0.99995 1.37611 1.46410 1.53379 2.04565 2.13332 2.34071 2.66133 2.97354 3.30818 3.31716 3.59401 3.66977 3.67951 3.91163 4.02430 4.45254 4.51553 4.80293 4.85594 4.99075 5.10337 5.23450 5.38825 5.51654 5.72713 5.90541 5.96128 6.04181 6.13779 6.40919 6.63863 6.74475 6.97359 7.14387 8.06183 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.007736 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.472096 B = 3618.796174 C = 5056.875703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C 0.304 3.696 3 C -0.205 4.205 4 C -0.023 4.023 5 C -0.225 4.225 6 C -0.010 4.010 7 C -0.136 4.136 8 C 0.153 3.847 9 N -0.528 5.528 10 C 0.271 3.729 11 N -0.533 5.533 12 C 0.144 3.856 13 C -0.159 4.159 14 C 0.129 3.871 15 C -0.462 4.462 16 H 0.069 0.931 17 C 0.050 3.950 18 N -0.784 5.784 19 Si 0.971 3.029 20 H -0.256 1.256 21 H -0.256 1.256 22 H -0.270 1.270 23 H 0.131 0.869 24 H 0.141 0.859 25 H 0.195 0.805 26 H 0.226 0.774 27 H 0.166 0.834 28 H 0.126 0.874 29 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.467 2.227 2.139 9.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.211 5.211 2 C -0.005 4.005 3 C -0.211 4.211 4 C -0.043 4.043 5 C -0.244 4.244 6 C -0.012 4.012 7 C -0.140 4.140 8 C -0.013 4.013 9 N -0.241 5.241 10 C -0.015 4.015 11 N -0.246 5.246 12 C -0.021 4.021 13 C -0.178 4.178 14 C 0.124 3.876 15 C -0.490 4.490 16 H 0.087 0.913 17 C -0.171 4.171 18 N -0.407 5.407 19 Si 0.792 3.208 20 H -0.180 1.180 21 H -0.179 1.179 22 H -0.195 1.195 23 H 0.149 0.851 24 H 0.159 0.841 25 H 0.211 0.789 26 H 0.242 0.758 27 H 0.183 0.817 28 H 0.143 0.857 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.888 2.001 2.086 9.346 hybrid contribution -1.093 -0.280 -0.971 1.489 sum 7.795 1.722 1.115 8.061 Atomic orbital electron populations 1.81010 1.13323 1.15803 1.10952 1.26044 0.93007 0.90634 0.90783 1.17255 0.82925 1.24272 0.96682 1.20717 0.94096 0.94518 0.94980 1.20516 0.92921 1.12749 0.98253 1.18433 0.89508 0.98566 0.94703 1.20767 0.95127 1.01634 0.96506 1.23777 0.89671 0.90096 0.97725 1.68459 1.09243 1.15773 1.30618 1.25592 1.02566 0.90308 0.83044 1.68435 1.10819 1.15720 1.29641 1.23534 0.89363 0.90645 0.98572 1.21362 0.93351 1.05364 0.97727 1.18592 0.92060 0.87054 0.89920 1.19842 1.01404 1.25865 1.01866 0.91293 1.26640 0.94589 0.91643 1.04235 1.69678 1.15695 1.17800 1.37514 0.85382 0.79214 0.79976 0.76258 1.18033 1.17946 1.19523 0.85118 0.84128 0.78851 0.75827 0.81668 0.85660 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.23 18.54 19.00 0.35 -24.88 15 2 C 0.30 13.93 14.28 88.33 1.26 15.19 15 3 C -0.21 -8.93 5.95 -19.55 -0.12 -9.04 15 4 C -0.02 -0.81 9.74 22.47 0.22 -0.59 15 5 C -0.23 -7.39 9.39 22.53 0.21 -7.17 15 6 C -0.01 -0.35 5.86 -20.12 -0.12 -0.47 15 7 C -0.14 -4.34 5.91 -19.86 -0.12 -4.46 15 8 C 0.15 4.16 10.69 85.00 0.91 5.07 15 9 N -0.53 -14.15 10.42 -199.17 -2.08 -16.23 15 10 C 0.27 6.91 12.27 180.86 2.22 9.13 15 11 N -0.53 -15.98 10.42 -199.17 -2.08 -18.06 15 12 C 0.14 4.67 10.68 85.00 0.91 5.57 15 13 C -0.16 -6.74 8.08 22.94 0.19 -6.56 15 14 C 0.13 6.00 5.73 -19.90 -0.11 5.89 15 15 C -0.46 -22.29 8.58 23.39 0.20 -22.09 15 16 H 0.07 3.45 7.37 -2.91 -0.02 3.43 15 17 C 0.05 2.19 5.16 85.35 0.44 2.63 15 18 N -0.78 -34.26 10.94 21.88 0.24 -34.02 15 19 Si 0.97 34.24 29.60 68.60 2.03 36.27 15 20 H -0.26 -8.90 7.11 99.48 0.71 -8.19 15 21 H -0.26 -8.26 7.11 99.48 0.71 -7.56 15 22 H -0.27 -9.90 7.11 99.48 0.71 -9.19 15 23 H 0.13 3.91 8.06 -2.91 -0.02 3.89 15 24 H 0.14 3.48 6.19 -2.91 -0.02 3.46 15 25 H 0.19 4.09 6.27 -2.91 -0.02 4.07 15 26 H 0.23 3.81 8.06 -2.91 -0.02 3.79 15 27 H 0.17 5.48 6.29 -2.91 -0.02 5.46 15 28 H 0.13 5.36 4.34 -2.91 -0.01 5.35 15 29 H 0.30 11.77 8.30 -92.71 -0.77 11.00 15 Total: -1.00 -54.10 268.44 5.77 -48.32 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.22 Total: 15.50 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 6.09 Total: -6.92 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -3.56 Total: -93.19 kcal Atomic # 14 Polarization: 34.24 SS G_CDS: 2.03 Total: 36.27 kcal Total: -54.10 5.77 -48.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240375616.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.917 kcal (2) G-P(sol) polarization free energy of solvation -54.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds