Wall clock time and date at job start Mon Mar 30 2020 18:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39100 * 120.56705 * 351.98992 * 3 2 1 5 5 C 1.39359 * 119.80623 * 180.02562 * 4 3 2 6 6 C 1.48037 * 119.49982 * 179.97438 * 5 4 3 7 7 C 1.39944 * 120.93945 * 359.72646 * 6 5 4 8 8 N 1.32148 * 118.92609 * 179.76438 * 7 6 5 9 9 C 1.31869 * 120.96379 * 0.51762 * 8 7 6 10 10 N 1.31861 * 122.09622 * 359.72675 * 9 8 7 11 11 C 1.32146 * 120.97262 * 0.02562 * 10 9 8 12 12 C 1.39969 * 121.00378 * 0.02623 * 5 4 3 13 13 C 1.36016 * 121.19544 * 359.68246 * 12 5 4 14 14 C 1.41046 * 120.10243 * 0.57314 * 13 12 5 15 15 C 1.40457 * 120.48809 * 179.73713 * 14 13 12 16 16 H 1.07994 * 120.00058 * 154.42330 * 15 14 13 17 17 C 1.40314 * 119.99948 * 334.42541 * 15 14 13 18 18 N 1.30629 * 119.99879 * 334.69327 * 17 15 14 19 19 Si 1.86792 * 119.99916 * 154.69143 * 17 15 14 20 20 H 1.48504 * 109.47437 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47346 * 299.99865 * 19 17 15 22 22 H 1.48497 * 109.47303 * 59.99561 * 19 17 15 23 23 H 1.07997 * 120.09774 * 0.02562 * 4 3 2 24 24 H 1.08006 * 120.53980 * 0.02562 * 7 6 5 25 25 H 1.08003 * 118.94939 * 179.70451 * 9 8 7 26 26 H 1.07994 * 120.54305 * 179.97438 * 11 10 9 27 27 H 1.08005 * 119.40404 * 179.97438 * 12 5 4 28 28 H 1.08000 * 119.95466 * 180.28615 * 13 12 5 29 29 H 0.96998 * 120.00042 * 354.19697 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2759 -1.1851 0.1669 5 6 4.6694 -1.1660 0.1649 6 6 5.4159 -2.4318 0.3436 7 6 4.7423 -3.6457 0.5202 8 7 5.4484 -4.7524 0.6714 9 6 6.7667 -4.7219 0.6678 10 7 7.4412 -3.5999 0.5095 11 6 6.8154 -2.4475 0.3469 12 6 5.3738 0.0318 -0.0026 13 6 4.7230 1.2137 -0.1748 14 6 3.3130 1.2513 -0.1753 15 6 2.6327 2.4681 -0.3471 16 1 1.6318 2.4746 -0.7524 17 6 3.2537 3.6752 0.0080 18 7 4.1948 3.6839 0.9138 19 14 2.7344 5.2699 -0.8147 20 1 3.5373 6.3932 -0.2681 21 1 2.9597 5.1677 -2.2789 22 1 1.2939 5.5164 -0.5516 23 1 2.7472 -2.1176 0.2977 24 1 3.6628 -3.6781 0.5284 25 1 7.3114 -5.6453 0.7989 26 1 7.3747 -1.5326 0.2183 27 1 6.4537 0.0168 0.0005 28 1 5.2866 2.1254 -0.3068 29 1 4.4065 2.8723 1.4010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240375682.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:20 Heat of formation + Delta-G solvation = 75.433166 kcal Electronic energy + Delta-G solvation = -16412.015747 eV Core-core repulsion = 13685.200769 eV Total energy + Delta-G solvation = -2726.814978 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.52680 -38.20277 -35.45577 -34.94881 -33.38172 -32.23412 -30.38218 -29.14941 -26.06717 -24.55219 -23.47753 -22.24867 -20.98789 -18.75596 -17.46496 -17.40680 -16.79945 -15.25542 -14.71269 -14.45146 -14.39910 -14.10626 -13.45959 -13.36776 -13.07536 -12.79289 -12.56276 -12.12700 -11.95671 -11.59448 -11.47622 -11.40327 -10.72713 -10.59077 -10.50254 -10.29128 -10.07439 -9.75425 -9.32800 -8.87734 -8.25208 -7.93213 -7.65070 -5.07213 1.00341 1.41451 1.90695 2.45170 2.88002 2.97438 3.08716 3.58265 3.64054 3.77937 4.14624 4.28253 4.46781 4.56856 4.91548 5.00631 5.03806 5.28173 5.44323 5.55037 5.76443 5.95031 6.09952 6.36786 6.46143 6.72658 6.73658 6.98400 7.07413 7.15435 7.30396 7.37359 7.47195 7.59981 8.01062 8.11743 8.42026 8.53931 9.34360 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.029727 B = 0.005693 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.681334 B = 4917.074917 C = 5756.007430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.295 3.705 3 C -0.183 4.183 4 C 0.016 3.984 5 C -0.216 4.216 6 C -0.072 4.072 7 C 0.108 3.892 8 N -0.510 5.510 9 C 0.236 3.764 10 N -0.511 5.511 11 C 0.112 3.888 12 C -0.035 4.035 13 C -0.213 4.213 14 C 0.125 3.875 15 C -0.446 4.446 16 H 0.091 0.909 17 C 0.033 3.967 18 N -0.744 5.744 19 Si 1.067 2.933 20 H -0.266 1.266 21 H -0.266 1.266 22 H -0.269 1.269 23 H 0.106 0.894 24 H 0.162 0.838 25 H 0.185 0.815 26 H 0.163 0.837 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.670 -2.782 -1.134 5.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.015 4.015 3 C -0.188 4.188 4 C -0.006 4.006 5 C -0.219 4.219 6 C -0.076 4.076 7 C -0.058 4.058 8 N -0.223 5.223 9 C -0.051 4.051 10 N -0.223 5.223 11 C -0.055 4.055 12 C -0.054 4.054 13 C -0.232 4.232 14 C 0.119 3.881 15 C -0.471 4.471 16 H 0.109 0.891 17 C -0.195 4.195 18 N -0.364 5.364 19 Si 0.888 3.112 20 H -0.190 1.190 21 H -0.191 1.191 22 H -0.194 1.194 23 H 0.124 0.876 24 H 0.179 0.821 25 H 0.201 0.799 26 H 0.180 0.820 27 H 0.120 0.880 28 H 0.135 0.865 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.822 -2.053 -1.024 4.458 hybrid contribution -0.303 -0.942 0.029 0.990 sum 3.520 -2.994 -0.995 4.727 Atomic orbital electron populations 1.81059 1.12554 1.09538 1.14328 1.25666 0.92600 0.91750 0.91531 1.16648 0.83393 0.94912 1.23884 1.20637 0.92701 0.95215 0.91999 1.17403 0.91699 0.90668 1.22122 1.20617 0.95101 0.95325 0.96545 1.23222 1.00522 0.87163 0.94931 1.68198 1.09347 1.31668 1.13086 1.24568 0.87514 0.96227 0.96763 1.68198 1.42204 0.99473 1.12443 1.23229 0.91323 0.96083 0.94896 1.20401 0.97973 0.91881 0.95119 1.20784 0.93517 0.97518 1.11356 1.18530 0.91510 0.90699 0.87370 1.21071 1.03277 0.91971 1.30767 0.89130 1.27524 0.92202 1.04894 0.94867 1.70411 1.19374 1.35357 1.11219 0.83578 0.77669 0.72977 0.77025 1.19009 1.19107 1.19364 0.87575 0.82135 0.79854 0.81960 0.87992 0.86474 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.23 18.54 41.84 0.78 -10.45 15 2 C 0.29 6.41 14.30 -22.47 -0.32 6.09 15 3 C -0.18 -3.81 5.93 -104.26 -0.62 -4.43 15 4 C 0.02 0.29 9.15 -38.84 -0.36 -0.07 15 5 C -0.22 -3.85 5.88 -104.81 -0.62 -4.46 15 6 C -0.07 -1.18 5.91 -104.60 -0.62 -1.80 15 7 C 0.11 1.72 10.69 -16.78 -0.18 1.54 15 8 N -0.51 -8.13 10.42 -14.25 -0.15 -8.28 15 9 C 0.24 3.49 12.27 -92.03 -1.13 2.36 15 10 N -0.51 -8.05 10.42 -14.25 -0.15 -8.20 15 11 C 0.11 1.74 10.69 -16.77 -0.18 1.56 15 12 C -0.03 -0.62 9.32 -39.73 -0.37 -0.99 15 13 C -0.21 -4.26 7.88 -39.32 -0.31 -4.57 15 14 C 0.12 2.71 5.46 -104.61 -0.57 2.14 15 15 C -0.45 -9.88 8.49 -37.97 -0.32 -10.20 15 16 H 0.09 2.05 7.44 -52.49 -0.39 1.66 15 17 C 0.03 0.69 4.95 -17.28 -0.09 0.61 15 18 N -0.74 -16.08 12.31 55.57 0.68 -15.39 15 19 Si 1.07 17.93 30.00 -169.99 -5.10 12.83 15 20 H -0.27 -4.43 7.11 56.52 0.40 -4.03 15 21 H -0.27 -4.31 7.11 56.52 0.40 -3.91 15 22 H -0.27 -4.43 7.11 56.52 0.40 -4.03 15 23 H 0.11 1.71 6.22 -52.49 -0.33 1.38 15 24 H 0.16 2.26 6.29 -52.48 -0.33 1.93 15 25 H 0.18 2.07 8.06 -52.48 -0.42 1.65 15 26 H 0.16 2.21 6.27 -52.49 -0.33 1.88 15 27 H 0.10 1.56 6.18 -52.48 -0.32 1.23 15 28 H 0.12 2.37 6.50 -52.49 -0.34 2.03 15 29 H 0.31 6.76 6.68 -40.82 -0.27 6.49 15 LS Contribution 267.58 15.07 4.03 4.03 Total: -1.00 -24.28 267.58 -7.12 -31.39 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -1.53 Total: 6.28 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -5.68 Total: -12.22 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 1.16 Total: -42.31 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.10 Total: 12.83 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -24.28 -7.12 -31.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240375682.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.827 kcal (2) G-P(sol) polarization free energy of solvation -24.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds