Wall clock time and date at job start Mon Mar 30 2020 18:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39100 * 120.56705 * 351.98992 * 3 2 1 5 5 C 1.39359 * 119.80623 * 180.02562 * 4 3 2 6 6 C 1.48037 * 119.49982 * 179.97438 * 5 4 3 7 7 C 1.39944 * 120.93945 * 359.72646 * 6 5 4 8 8 N 1.32148 * 118.92609 * 179.76438 * 7 6 5 9 9 C 1.31869 * 120.96379 * 0.51762 * 8 7 6 10 10 N 1.31861 * 122.09622 * 359.72675 * 9 8 7 11 11 C 1.32146 * 120.97262 * 0.02562 * 10 9 8 12 12 C 1.39969 * 121.00378 * 0.02623 * 5 4 3 13 13 C 1.36016 * 121.19544 * 359.68246 * 12 5 4 14 14 C 1.41046 * 120.10243 * 0.57314 * 13 12 5 15 15 C 1.40457 * 120.48809 * 179.73713 * 14 13 12 16 16 H 1.07994 * 120.00058 * 154.42330 * 15 14 13 17 17 C 1.40314 * 119.99948 * 334.42541 * 15 14 13 18 18 N 1.30629 * 119.99879 * 334.69327 * 17 15 14 19 19 Si 1.86792 * 119.99916 * 154.69143 * 17 15 14 20 20 H 1.48504 * 109.47437 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47346 * 299.99865 * 19 17 15 22 22 H 1.48497 * 109.47303 * 59.99561 * 19 17 15 23 23 H 1.07997 * 120.09774 * 0.02562 * 4 3 2 24 24 H 1.08006 * 120.53980 * 0.02562 * 7 6 5 25 25 H 1.08003 * 118.94939 * 179.70451 * 9 8 7 26 26 H 1.07994 * 120.54305 * 179.97438 * 11 10 9 27 27 H 1.08005 * 119.40404 * 179.97438 * 12 5 4 28 28 H 1.08000 * 119.95466 * 180.28615 * 13 12 5 29 29 H 0.96998 * 120.00042 * 354.19697 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2759 -1.1851 0.1669 5 6 4.6694 -1.1660 0.1649 6 6 5.4159 -2.4318 0.3436 7 6 4.7423 -3.6457 0.5202 8 7 5.4484 -4.7524 0.6714 9 6 6.7667 -4.7219 0.6678 10 7 7.4412 -3.5999 0.5095 11 6 6.8154 -2.4475 0.3469 12 6 5.3738 0.0318 -0.0026 13 6 4.7230 1.2137 -0.1748 14 6 3.3130 1.2513 -0.1753 15 6 2.6327 2.4681 -0.3471 16 1 1.6318 2.4746 -0.7524 17 6 3.2537 3.6752 0.0080 18 7 4.1948 3.6839 0.9138 19 14 2.7344 5.2699 -0.8147 20 1 3.5373 6.3932 -0.2681 21 1 2.9597 5.1677 -2.2789 22 1 1.2939 5.5164 -0.5516 23 1 2.7472 -2.1176 0.2977 24 1 3.6628 -3.6781 0.5284 25 1 7.3114 -5.6453 0.7989 26 1 7.3747 -1.5326 0.2183 27 1 6.4537 0.0168 0.0005 28 1 5.2866 2.1254 -0.3068 29 1 4.4065 2.8723 1.4010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240375682.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:20 Heat of formation + Delta-G solvation = 65.068360 kcal Electronic energy + Delta-G solvation = -16412.465199 eV Core-core repulsion = 13685.200769 eV Total energy + Delta-G solvation = -2727.264430 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.78322 -39.72514 -37.16106 -36.45126 -34.62106 -33.64788 -31.90931 -30.60645 -27.54671 -25.87065 -24.83386 -23.73732 -22.46033 -20.30526 -18.95099 -18.61796 -18.10737 -16.71895 -16.22319 -15.93121 -15.64583 -15.51514 -14.81402 -14.73230 -14.56166 -14.24311 -14.12709 -13.73903 -13.52433 -13.15625 -12.96325 -12.79708 -12.05809 -11.92440 -11.77557 -11.73385 -11.52651 -11.22021 -10.77301 -10.11137 -9.79645 -9.50027 -9.15587 -6.69124 -0.28329 0.17750 0.32030 0.98813 1.50385 1.62168 1.79090 1.92547 2.20674 2.24477 2.54500 2.97768 3.34472 3.36122 3.42100 3.47667 3.70081 3.93845 4.07512 4.20108 4.39931 4.68881 4.78259 4.82382 5.01415 5.18098 5.41581 5.47290 5.55501 5.61087 5.78504 5.91636 6.06086 6.11320 6.42897 6.55010 6.84426 7.20181 7.74224 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.029727 B = 0.005693 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.681334 B = 4917.074917 C = 5756.007430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.301 3.699 3 C -0.205 4.205 4 C 0.014 3.986 5 C -0.198 4.198 6 C -0.092 4.092 7 C 0.114 3.886 8 N -0.525 5.525 9 C 0.247 3.753 10 N -0.523 5.523 11 C 0.120 3.880 12 C -0.029 4.029 13 C -0.224 4.224 14 C 0.113 3.887 15 C -0.487 4.487 16 H 0.073 0.927 17 C 0.012 3.988 18 N -0.764 5.764 19 Si 1.108 2.892 20 H -0.262 1.262 21 H -0.256 1.256 22 H -0.267 1.267 23 H 0.130 0.870 24 H 0.176 0.824 25 H 0.219 0.781 26 H 0.182 0.818 27 H 0.133 0.867 28 H 0.111 0.889 29 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.327 -4.345 -1.228 7.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.201 5.201 2 C -0.008 4.008 3 C -0.210 4.210 4 C -0.007 4.007 5 C -0.201 4.201 6 C -0.096 4.096 7 C -0.052 4.052 8 N -0.238 5.238 9 C -0.040 4.040 10 N -0.236 5.236 11 C -0.046 4.046 12 C -0.047 4.047 13 C -0.243 4.243 14 C 0.107 3.893 15 C -0.512 4.512 16 H 0.092 0.908 17 C -0.212 4.212 18 N -0.384 5.384 19 Si 0.925 3.075 20 H -0.185 1.185 21 H -0.181 1.181 22 H -0.191 1.191 23 H 0.147 0.853 24 H 0.193 0.807 25 H 0.235 0.765 26 H 0.199 0.801 27 H 0.151 0.849 28 H 0.129 0.871 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.482 -3.639 -1.117 6.674 hybrid contribution -0.623 -0.843 0.101 1.053 sum 4.859 -4.481 -1.016 6.688 Atomic orbital electron populations 1.81036 1.13144 1.10319 1.15559 1.25906 0.92863 0.91084 0.90933 1.16836 0.83008 0.95735 1.25458 1.20873 0.93162 0.95320 0.91346 1.17591 0.91547 0.91333 1.19629 1.20534 0.95537 0.94787 0.98771 1.23530 1.01432 0.87004 0.93267 1.68326 1.09927 1.31526 1.13985 1.25355 0.87443 0.97222 0.93940 1.68337 1.42253 0.99733 1.13266 1.23591 0.91123 0.96945 0.92951 1.20718 0.99621 0.91063 0.93342 1.20772 0.92881 0.98229 1.12396 1.18802 0.92486 0.90948 0.87071 1.21062 1.03164 0.93183 1.33832 0.90840 1.28504 0.91541 1.06789 0.94350 1.70494 1.20923 1.34698 1.12237 0.83077 0.77404 0.70246 0.76814 1.18539 1.18059 1.19131 0.85267 0.80734 0.76508 0.80083 0.84924 0.87070 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -24.02 18.54 19.00 0.35 -23.66 15 2 C 0.30 13.35 14.30 88.33 1.26 14.61 15 3 C -0.20 -8.58 5.93 -19.63 -0.12 -8.70 15 4 C 0.01 0.49 9.15 22.75 0.21 0.69 15 5 C -0.20 -6.61 5.88 -19.99 -0.12 -6.73 15 6 C -0.09 -2.74 5.91 -19.85 -0.12 -2.86 15 7 C 0.11 3.24 10.69 85.06 0.91 4.15 15 8 N -0.52 -14.84 10.42 -198.98 -2.07 -16.91 15 9 C 0.25 6.31 12.27 180.84 2.22 8.53 15 10 N -0.52 -14.47 10.42 -198.98 -2.07 -16.55 15 11 C 0.12 3.32 10.69 85.06 0.91 4.23 15 12 C -0.03 -0.97 9.32 22.17 0.21 -0.77 15 13 C -0.22 -8.94 7.88 22.44 0.18 -8.77 15 14 C 0.11 4.99 5.46 -19.86 -0.11 4.88 15 15 C -0.49 -22.45 8.49 23.32 0.20 -22.25 15 16 H 0.07 3.52 7.44 -2.91 -0.02 3.50 15 17 C 0.01 0.50 4.95 85.38 0.42 0.92 15 18 N -0.76 -33.83 12.31 21.89 0.27 -33.56 15 19 Si 1.11 36.73 30.00 68.60 2.06 38.79 15 20 H -0.26 -8.38 7.11 99.48 0.71 -7.67 15 21 H -0.26 -8.00 7.11 99.48 0.71 -7.29 15 22 H -0.27 -8.63 7.11 99.48 0.71 -7.92 15 23 H 0.13 3.90 6.22 -2.91 -0.02 3.88 15 24 H 0.18 4.36 6.29 -2.91 -0.02 4.34 15 25 H 0.22 3.89 8.06 -2.91 -0.02 3.86 15 26 H 0.18 4.19 6.27 -2.91 -0.02 4.17 15 27 H 0.13 3.63 6.18 -2.91 -0.02 3.61 15 28 H 0.11 4.55 6.50 -2.91 -0.02 4.53 15 29 H 0.30 13.50 6.68 -92.71 -0.62 12.88 15 Total: -1.00 -52.00 267.58 5.95 -46.05 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 1.36 Total: 17.89 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 6.05 Total: -12.05 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -3.53 Total: -90.68 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.06 Total: 38.79 kcal Total: -52.00 5.95 -46.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240375682.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.118 kcal (2) G-P(sol) polarization free energy of solvation -52.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds