Wall clock time and date at job start Mon Mar 30 2020 18:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39303 * 119.67677 * 159.40405 * 3 2 1 5 5 C 1.39624 * 118.90293 * 180.29326 * 4 3 2 6 6 C 1.48374 * 120.86229 * 179.70841 * 5 4 3 7 7 C 1.39851 * 119.60280 * 180.02562 * 6 5 4 8 8 C 1.38726 * 119.46326 * 179.97438 * 7 6 5 9 9 C 1.38261 * 118.68483 * 359.97438 * 8 7 6 10 10 C 1.40705 * 119.17856 * 0.02562 * 9 8 7 11 11 C 1.41401 * 119.76534 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00082 * 7.27133 * 11 10 9 13 13 C 1.40017 * 119.99501 * 187.26800 * 11 10 9 14 14 N 1.30743 * 120.00350 * 7.38957 * 13 11 10 15 15 Si 1.86801 * 119.99626 * 187.39107 * 13 11 10 16 16 H 1.48502 * 109.47187 * 84.98277 * 15 13 11 17 17 H 1.48506 * 109.47107 * 204.98029 * 15 13 11 18 18 H 1.48495 * 109.47301 * 324.98324 * 15 13 11 19 19 N 1.32195 * 119.60726 * 359.73663 * 6 5 4 20 20 C 1.39798 * 118.26782 * 359.43287 * 5 4 3 21 21 C 1.38268 * 119.24388 * 0.27248 * 20 5 4 22 22 N 1.31613 * 121.04001 * 0.02562 * 21 20 5 23 23 H 1.07994 * 120.54812 * 359.97438 * 4 3 2 24 24 H 1.08001 * 120.26704 * 359.97438 * 7 6 5 25 25 H 1.08005 * 120.65863 * 180.02562 * 8 7 6 26 26 H 1.07998 * 120.40744 * 179.97438 * 9 8 7 27 27 H 0.97002 * 119.99505 * 179.97438 * 14 13 11 28 28 H 1.08005 * 120.37363 * 180.25575 * 20 5 4 29 29 H 1.07995 * 119.47765 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2572 1.1339 -0.4258 5 6 4.6533 1.1147 -0.4250 6 6 5.4310 2.2952 -0.8757 7 6 6.8287 2.2470 -0.8645 8 6 7.5529 3.3522 -1.2870 9 6 6.8649 4.4746 -1.7094 10 6 5.4579 4.4617 -1.6974 11 6 4.7418 5.6030 -2.1263 12 1 5.2677 6.4350 -2.5708 13 6 3.3508 5.6544 -1.9746 14 7 2.7306 4.7156 -1.3086 15 14 2.3811 7.0643 -2.7238 16 1 2.0725 6.7538 -4.1429 17 1 1.1145 7.2491 -1.9708 18 1 3.1853 8.3106 -2.6534 19 7 4.7945 3.3778 -1.2884 20 6 5.2993 -0.0437 0.0170 21 6 4.5414 -1.1241 0.4296 22 7 3.2263 -1.0770 0.4114 23 1 2.7205 2.0110 -0.7559 24 1 7.3400 1.3566 -0.5297 25 1 8.6328 3.3359 -1.2868 26 1 7.4008 5.3506 -2.0437 27 1 1.7670 4.7515 -1.2033 28 1 6.3780 -0.0941 0.0357 29 1 5.0365 -2.0209 0.7714 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241182537.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:32 Heat of formation + Delta-G solvation = 96.977840 kcal Electronic energy + Delta-G solvation = -16583.849586 eV Core-core repulsion = 13857.968855 eV Total energy + Delta-G solvation = -2725.880731 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.06037 -38.25419 -36.26160 -34.04266 -32.85604 -31.45924 -30.60567 -29.48270 -25.99272 -24.63425 -23.53312 -21.37726 -21.34093 -18.63204 -17.53617 -16.12760 -16.02070 -15.39840 -14.66277 -14.60934 -14.41598 -13.98678 -13.78272 -12.99561 -12.86190 -12.75533 -12.55827 -12.32039 -12.06400 -11.56998 -11.36968 -11.21185 -10.90844 -10.63873 -10.15778 -9.93492 -9.45157 -9.37951 -8.90351 -8.37016 -7.87465 -7.64304 -6.67409 -4.69801 0.81155 1.28265 2.58105 2.78121 2.78388 3.01716 3.03493 3.05902 3.27040 3.77629 3.82918 4.19057 4.61456 4.85826 4.91179 5.21660 5.40335 5.53858 5.69106 5.88324 6.00682 6.10190 6.27834 6.42813 6.53078 6.75729 6.89272 6.93029 7.08638 7.33218 7.49001 7.59786 7.78569 7.96919 8.03161 8.45977 8.69790 9.77353 10.10877 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.008077 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.286343 B = 3465.979424 C = 5053.985548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.282 3.718 3 C 0.168 3.832 4 C -0.078 4.078 5 C 0.032 3.968 6 C 0.164 3.836 7 C -0.292 4.292 8 C -0.059 4.059 9 C -0.262 4.262 10 C 0.258 3.742 11 C -0.429 4.429 12 H 0.087 0.913 13 C 0.074 3.926 14 N -0.722 5.722 15 Si 0.909 3.091 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.262 1.262 19 N -0.468 5.468 20 C -0.140 4.140 21 C 0.096 3.904 22 N -0.465 5.465 23 H 0.169 0.831 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.277 0.723 28 H 0.144 0.856 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 -4.970 1.353 6.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.035 4.035 3 C 0.031 3.969 4 C -0.101 4.101 5 C 0.023 3.977 6 C 0.019 3.981 7 C -0.316 4.316 8 C -0.083 4.083 9 C -0.285 4.285 10 C 0.133 3.867 11 C -0.459 4.459 12 H 0.105 0.895 13 C -0.152 4.152 14 N -0.343 5.343 15 Si 0.733 3.267 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.186 1.186 19 N -0.181 5.181 20 C -0.161 4.161 21 C -0.063 4.063 22 N -0.176 5.176 23 H 0.187 0.813 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.088 0.912 28 H 0.162 0.838 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.003 -5.678 1.686 6.007 hybrid contribution 1.557 1.322 -0.553 2.116 sum 2.560 -4.355 1.133 5.178 Atomic orbital electron populations 1.81170 1.11669 1.07638 1.08136 1.25020 0.91753 0.93171 0.93599 1.16299 0.85925 0.91998 1.02674 1.22557 0.94692 0.98174 0.94663 1.19164 0.92267 0.92840 0.93435 1.19425 0.89521 0.92095 0.97029 1.21145 0.93840 1.00127 1.16510 1.20819 0.97810 0.93333 0.96353 1.21862 0.95746 0.98921 1.12018 1.18453 0.88362 0.90957 0.88923 1.19629 0.91783 1.00733 1.33804 0.89518 1.26011 0.98419 0.96894 0.93841 1.69959 1.10035 1.28802 1.25495 0.86309 0.79100 0.81355 0.79945 1.19158 1.20063 1.18557 1.68542 1.37301 0.98235 1.13979 1.22512 1.02119 0.93181 0.98320 1.22503 0.88121 0.98305 0.97396 1.67343 1.10820 1.25875 1.13559 0.81315 0.88077 0.88079 0.87919 0.91233 0.83818 0.81947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.59 18.54 41.84 0.78 -6.81 15 2 C 0.28 4.95 15.53 -22.47 -0.35 4.60 15 3 C 0.17 2.85 6.58 -85.12 -0.56 2.29 15 4 C -0.08 -1.44 9.33 -38.67 -0.36 -1.80 15 5 C 0.03 0.58 5.91 -104.62 -0.62 -0.03 15 6 C 0.16 3.54 6.74 -82.93 -0.56 2.98 15 7 C -0.29 -5.75 9.50 -38.80 -0.37 -6.12 15 8 C -0.06 -1.19 10.15 -39.39 -0.40 -1.59 15 9 C -0.26 -5.86 9.83 -38.64 -0.38 -6.24 15 10 C 0.26 6.49 6.52 -85.01 -0.55 5.93 15 11 C -0.43 -10.62 9.13 -37.71 -0.34 -10.96 15 12 H 0.09 2.01 7.86 -52.49 -0.41 1.60 15 13 C 0.07 1.75 5.47 -17.35 -0.09 1.66 15 14 N -0.72 -17.66 11.57 55.55 0.64 -17.02 15 15 Si 0.91 17.67 29.57 -169.99 -5.03 12.64 15 16 H -0.27 -5.19 7.11 56.52 0.40 -4.78 15 17 H -0.28 -5.31 7.11 56.52 0.40 -4.91 15 18 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 19 N -0.47 -11.60 7.13 -7.67 -0.05 -11.65 15 20 C -0.14 -1.99 9.49 -38.99 -0.37 -2.36 15 21 C 0.10 1.25 11.17 -17.63 -0.20 1.05 15 22 N -0.46 -7.28 10.26 -11.24 -0.12 -7.40 15 23 H 0.17 3.51 7.63 -52.49 -0.40 3.11 15 24 H 0.10 1.64 6.26 -52.49 -0.33 1.31 15 25 H 0.10 1.68 8.06 -52.48 -0.42 1.26 15 26 H 0.10 2.11 8.06 -52.49 -0.42 1.69 15 27 H 0.28 6.23 8.29 -40.82 -0.34 5.89 15 28 H 0.14 1.69 6.29 -52.48 -0.33 1.36 15 29 H 0.16 1.45 8.06 -52.49 -0.42 1.02 15 LS Contribution 274.23 15.07 4.13 4.13 Total: -1.00 -27.05 274.23 -6.67 -33.73 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -1.87 Total: 2.96 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -5.16 Total: -10.59 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 1.25 Total: -42.88 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.05 -6.67 -33.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241182537.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.706 kcal (2) G-P(sol) polarization free energy of solvation -27.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds