Wall clock time and date at job start Mon Mar 30 2020 18:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39303 * 119.67677 * 159.40405 * 3 2 1 5 5 C 1.39624 * 118.90293 * 180.29326 * 4 3 2 6 6 C 1.48374 * 120.86229 * 179.70841 * 5 4 3 7 7 C 1.39851 * 119.60280 * 180.02562 * 6 5 4 8 8 C 1.38726 * 119.46326 * 179.97438 * 7 6 5 9 9 C 1.38261 * 118.68483 * 359.97438 * 8 7 6 10 10 C 1.40705 * 119.17856 * 0.02562 * 9 8 7 11 11 C 1.41401 * 119.76534 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00082 * 7.27133 * 11 10 9 13 13 C 1.40017 * 119.99501 * 187.26800 * 11 10 9 14 14 N 1.30743 * 120.00350 * 7.38957 * 13 11 10 15 15 Si 1.86801 * 119.99626 * 187.39107 * 13 11 10 16 16 H 1.48502 * 109.47187 * 84.98277 * 15 13 11 17 17 H 1.48506 * 109.47107 * 204.98029 * 15 13 11 18 18 H 1.48495 * 109.47301 * 324.98324 * 15 13 11 19 19 N 1.32195 * 119.60726 * 359.73663 * 6 5 4 20 20 C 1.39798 * 118.26782 * 359.43287 * 5 4 3 21 21 C 1.38268 * 119.24388 * 0.27248 * 20 5 4 22 22 N 1.31613 * 121.04001 * 0.02562 * 21 20 5 23 23 H 1.07994 * 120.54812 * 359.97438 * 4 3 2 24 24 H 1.08001 * 120.26704 * 359.97438 * 7 6 5 25 25 H 1.08005 * 120.65863 * 180.02562 * 8 7 6 26 26 H 1.07998 * 120.40744 * 179.97438 * 9 8 7 27 27 H 0.97002 * 119.99505 * 179.97438 * 14 13 11 28 28 H 1.08005 * 120.37363 * 180.25575 * 20 5 4 29 29 H 1.07995 * 119.47765 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2572 1.1339 -0.4258 5 6 4.6533 1.1147 -0.4250 6 6 5.4310 2.2952 -0.8757 7 6 6.8287 2.2470 -0.8645 8 6 7.5529 3.3522 -1.2870 9 6 6.8649 4.4746 -1.7094 10 6 5.4579 4.4617 -1.6974 11 6 4.7418 5.6030 -2.1263 12 1 5.2677 6.4350 -2.5708 13 6 3.3508 5.6544 -1.9746 14 7 2.7306 4.7156 -1.3086 15 14 2.3811 7.0643 -2.7238 16 1 2.0725 6.7538 -4.1429 17 1 1.1145 7.2491 -1.9708 18 1 3.1853 8.3106 -2.6534 19 7 4.7945 3.3778 -1.2884 20 6 5.2993 -0.0437 0.0170 21 6 4.5414 -1.1241 0.4296 22 7 3.2263 -1.0770 0.4114 23 1 2.7205 2.0110 -0.7559 24 1 7.3400 1.3566 -0.5297 25 1 8.6328 3.3359 -1.2868 26 1 7.4008 5.3506 -2.0437 27 1 1.7670 4.7515 -1.2033 28 1 6.3780 -0.0941 0.0357 29 1 5.0365 -2.0209 0.7714 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241182537.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:32 Heat of formation + Delta-G solvation = 82.017031 kcal Electronic energy + Delta-G solvation = -16584.498336 eV Core-core repulsion = 13857.968855 eV Total energy + Delta-G solvation = -2726.529481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36513 -39.86878 -37.68327 -35.70035 -34.32459 -32.80611 -32.18531 -31.07707 -27.68523 -25.96582 -24.95709 -23.02815 -22.77927 -20.09426 -19.19251 -17.50680 -17.35899 -16.94052 -16.19638 -16.07232 -15.74960 -15.62981 -15.13439 -14.43788 -14.36478 -14.28548 -14.01761 -13.79295 -13.57268 -12.97080 -12.88487 -12.79406 -12.63893 -12.18232 -11.77940 -11.46348 -10.98198 -10.70300 -10.13509 -10.04332 -9.55534 -9.27835 -8.38777 -6.50294 -0.49142 -0.06461 1.00176 1.23132 1.39165 1.39760 1.50746 1.52208 1.83086 2.20289 2.44470 2.76753 3.01617 3.47792 3.77863 3.94651 3.95617 4.13241 4.25552 4.52286 4.64499 4.78897 4.86672 4.88202 4.97568 5.20382 5.37046 5.44314 5.62308 5.68196 5.85809 6.15330 6.20786 6.25607 6.72397 6.75871 6.93198 8.09003 8.39850 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.008077 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.286343 B = 3465.979424 C = 5053.985548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.291 3.709 3 C 0.164 3.836 4 C -0.091 4.091 5 C 0.004 3.996 6 C 0.141 3.859 7 C -0.280 4.280 8 C -0.058 4.058 9 C -0.286 4.286 10 C 0.226 3.774 11 C -0.471 4.471 12 H 0.088 0.912 13 C 0.034 3.966 14 N -0.756 5.756 15 Si 0.978 3.022 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.254 1.254 19 N -0.502 5.502 20 C -0.114 4.114 21 C 0.115 3.885 22 N -0.468 5.468 23 H 0.136 0.864 24 H 0.147 0.853 25 H 0.142 0.858 26 H 0.110 0.890 27 H 0.277 0.723 28 H 0.181 0.819 29 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.530 -7.025 2.025 9.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.026 4.026 3 C 0.028 3.972 4 C -0.115 4.115 5 C -0.004 4.004 6 C -0.002 4.002 7 C -0.303 4.303 8 C -0.082 4.082 9 C -0.308 4.308 10 C 0.101 3.899 11 C -0.502 4.502 12 H 0.106 0.894 13 C -0.188 4.188 14 N -0.378 5.378 15 Si 0.799 3.201 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.178 1.178 19 N -0.216 5.216 20 C -0.135 4.135 21 C -0.045 4.045 22 N -0.180 5.180 23 H 0.153 0.847 24 H 0.165 0.835 25 H 0.160 0.840 26 H 0.128 0.872 27 H 0.087 0.913 28 H 0.198 0.802 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.158 -7.743 2.363 8.690 hybrid contribution 1.089 1.760 -0.692 2.182 sum 4.248 -5.984 1.671 7.526 Atomic orbital electron populations 1.81159 1.12313 1.08452 1.09083 1.25212 0.92008 0.92455 0.92916 1.16099 0.85437 0.92106 1.03515 1.22263 0.95313 0.97795 0.96140 1.19219 0.91965 0.93609 0.95641 1.20073 0.91172 0.92318 0.96608 1.21667 0.93104 1.01422 1.14108 1.21304 0.99900 0.92317 0.94665 1.22066 0.95047 1.00583 1.13146 1.18885 0.89909 0.91509 0.89643 1.19917 0.92894 1.01488 1.35905 0.89356 1.26785 0.98961 0.99133 0.93889 1.70072 1.10106 1.30602 1.27065 0.85278 0.77564 0.78469 0.78800 1.19091 1.19774 1.17774 1.68502 1.38710 0.99213 1.15126 1.22880 1.03863 0.91264 0.95506 1.23398 0.86893 0.99414 0.94806 1.67453 1.12376 1.24828 1.13311 0.84657 0.83548 0.84023 0.87154 0.91252 0.80220 0.76534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -16.35 18.54 19.00 0.35 -16.00 15 2 C 0.29 10.37 15.53 88.33 1.37 11.74 15 3 C 0.16 5.50 6.58 40.50 0.27 5.77 15 4 C -0.09 -3.46 9.33 22.86 0.21 -3.25 15 5 C 0.00 0.15 5.91 -19.87 -0.12 0.03 15 6 C 0.14 6.05 6.74 42.18 0.28 6.33 15 7 C -0.28 -10.15 9.50 22.78 0.22 -9.93 15 8 C -0.06 -2.17 10.15 22.39 0.23 -1.95 15 9 C -0.29 -12.82 9.83 22.88 0.22 -12.60 15 10 C 0.23 11.80 6.52 40.27 0.26 12.06 15 11 C -0.47 -24.51 9.13 23.48 0.21 -24.30 15 12 H 0.09 4.31 7.86 -2.91 -0.02 4.29 15 13 C 0.03 1.69 5.47 85.29 0.47 2.16 15 14 N -0.76 -39.29 11.57 21.83 0.25 -39.03 15 15 Si 0.98 37.77 29.57 68.60 2.03 39.80 15 16 H -0.27 -10.12 7.11 99.48 0.71 -9.41 15 17 H -0.27 -10.27 7.11 99.48 0.71 -9.56 15 18 H -0.25 -9.37 7.11 99.48 0.71 -8.67 15 19 N -0.50 -25.78 7.13 -178.18 -1.27 -27.05 15 20 C -0.11 -2.72 9.49 22.65 0.22 -2.50 15 21 C 0.11 2.39 11.17 84.73 0.95 3.33 15 22 N -0.47 -13.32 10.26 -189.46 -1.94 -15.26 15 23 H 0.14 6.07 7.63 -2.91 -0.02 6.05 15 24 H 0.15 3.87 6.26 -2.91 -0.02 3.85 15 25 H 0.14 4.10 8.06 -2.91 -0.02 4.07 15 26 H 0.11 4.59 8.06 -2.91 -0.02 4.57 15 27 H 0.28 13.34 8.29 -92.71 -0.77 12.57 15 28 H 0.18 2.96 6.29 -2.91 -0.02 2.94 15 29 H 0.22 2.21 8.06 -2.91 -0.02 2.19 15 Total: -1.00 -63.15 274.23 5.41 -57.74 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.20 Total: 12.90 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 4.79 Total: -13.09 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -2.61 Total: -97.35 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -63.15 5.41 -57.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241182537.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.755 kcal (2) G-P(sol) polarization free energy of solvation -63.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds