Wall clock time and date at job start Mon Mar 30 2020 18:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39224 * 119.67290 * 199.38360 * 3 2 1 5 5 C 1.39860 * 118.88189 * 180.27015 * 4 3 2 6 6 C 1.48022 * 120.88395 * 179.71431 * 5 4 3 7 7 C 1.40224 * 120.34122 * 179.72639 * 6 5 4 8 8 C 1.36730 * 118.60532 * 180.02562 * 7 6 5 9 9 C 1.40848 * 119.24478 * 359.97438 * 8 7 6 10 10 C 1.41036 * 119.68109 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00200 * 359.97438 * 10 9 8 12 12 C 1.40155 * 119.99869 * 180.02562 * 10 9 8 13 13 N 1.30680 * 119.99696 * 359.72591 * 12 10 9 14 14 Si 1.86795 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47088 * 89.99913 * 14 12 10 16 16 H 1.48495 * 109.47293 * 210.00115 * 14 12 10 17 17 H 1.48507 * 109.47015 * 330.00073 * 14 12 10 18 18 N 1.33769 * 120.63320 * 0.27981 * 9 8 7 19 19 C 1.31197 * 121.50746 * 359.42843 * 18 9 8 20 20 C 1.40023 * 118.22806 * 359.44556 * 5 4 3 21 21 C 1.38181 * 119.21504 * 0.27151 * 20 5 4 22 22 N 1.31664 * 121.06657 * 0.02562 * 21 20 5 23 23 H 1.08005 * 120.55961 * 0.02562 * 4 3 2 24 24 H 1.08004 * 120.70021 * 0.03639 * 7 6 5 25 25 H 1.08005 * 120.37906 * 180.02562 * 8 7 6 26 26 H 0.97000 * 119.99992 * 180.02562 * 13 12 10 27 27 H 1.07999 * 119.64977 * 180.26627 * 19 18 9 28 28 H 1.08001 * 120.39624 * 180.29317 * 20 5 4 29 29 H 1.08007 * 119.46769 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2566 1.1420 0.4015 5 6 4.6551 1.1264 0.3896 6 6 5.4318 2.3172 0.8015 7 6 6.8337 2.2871 0.7907 8 6 7.5155 3.4070 1.1786 9 6 6.7935 4.5497 1.5742 10 6 7.4875 5.7101 1.9756 11 1 8.5674 5.7194 1.9790 12 6 6.7756 6.8508 2.3711 13 7 5.4689 6.8409 2.3628 14 14 7.6948 8.3878 2.9020 15 1 7.9369 9.2530 1.7196 16 1 6.8835 9.1297 3.9003 17 1 8.9947 8.0027 3.5081 18 7 5.4558 4.5434 1.5778 19 6 4.7742 3.4859 1.2057 20 6 5.3008 -0.0477 -0.0168 21 6 4.5418 -1.1389 -0.3942 22 7 3.2261 -1.0898 -0.3776 23 1 2.7200 2.0261 0.7130 24 1 7.3637 1.3980 0.4823 25 1 8.5956 3.4155 1.1809 26 1 4.9762 7.6305 2.6362 27 1 3.6946 3.5152 1.2161 28 1 6.3794 -0.1000 -0.0347 29 1 5.0356 -2.0465 -0.7088 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241189545.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:44 Heat of formation + Delta-G solvation = 93.390945 kcal Electronic energy + Delta-G solvation = -16168.300936 eV Core-core repulsion = 13442.264665 eV Total energy + Delta-G solvation = -2726.036271 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.99865 -38.32762 -36.36456 -34.35821 -32.84576 -31.53013 -30.71503 -29.51594 -26.24405 -24.39827 -23.43463 -21.74224 -21.16272 -18.51344 -17.89023 -16.51809 -15.88064 -15.62343 -14.91118 -14.41728 -14.36611 -14.10273 -13.59363 -13.16624 -12.82493 -12.78969 -12.67746 -12.38717 -12.36258 -11.58869 -11.47544 -11.20751 -11.14424 -10.73749 -10.27530 -10.19450 -9.42204 -9.39861 -8.93972 -8.53919 -7.89878 -7.63808 -6.79483 -4.87213 0.85169 1.28668 2.51617 2.68465 2.82509 2.88692 2.89807 2.92555 3.25496 3.65553 3.74163 4.17549 4.49687 4.86781 5.19768 5.27965 5.34589 5.56901 5.59916 5.70741 5.95769 5.97137 6.24022 6.33351 6.46216 6.65558 6.72302 6.84655 7.04961 7.27704 7.43727 7.50334 7.67457 7.83501 8.05117 8.22869 8.52304 9.73747 9.89473 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.036926 B = 0.004702 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.081463 B = 5953.521825 C = 6701.757786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.280 3.720 3 C 0.188 3.812 4 C -0.149 4.149 5 C 0.079 3.921 6 C -0.294 4.294 7 C -0.027 4.027 8 C -0.269 4.269 9 C 0.248 3.752 10 C -0.390 4.390 11 H 0.092 0.908 12 C 0.059 3.941 13 N -0.689 5.689 14 Si 0.915 3.085 15 H -0.265 1.265 16 H -0.272 1.272 17 H -0.258 1.258 18 N -0.488 5.488 19 C 0.170 3.830 20 C -0.183 4.183 21 C 0.113 3.887 22 N -0.492 5.492 23 H 0.140 0.860 24 H 0.102 0.898 25 H 0.104 0.896 26 H 0.281 0.719 27 H 0.125 0.875 28 H 0.136 0.864 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.859 -4.836 -1.674 5.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.037 4.037 3 C 0.052 3.948 4 C -0.172 4.172 5 C 0.070 3.930 6 C -0.300 4.300 7 C -0.050 4.050 8 C -0.292 4.292 9 C 0.127 3.873 10 C -0.419 4.419 11 H 0.110 0.890 12 C -0.170 4.170 13 N -0.307 5.307 14 Si 0.738 3.262 15 H -0.190 1.190 16 H -0.197 1.197 17 H -0.181 1.181 18 N -0.200 5.200 19 C -0.002 4.002 20 C -0.204 4.204 21 C -0.045 4.045 22 N -0.205 5.205 23 H 0.157 0.843 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.093 0.907 27 H 0.142 0.858 28 H 0.153 0.847 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.081 -4.620 -1.591 4.886 hybrid contribution 1.773 0.547 0.181 1.864 sum 1.854 -4.073 -1.410 4.691 Atomic orbital electron populations 1.81182 1.11767 1.07747 1.08255 1.25196 0.91923 0.93076 0.93507 1.16152 0.85523 0.91704 1.01408 1.22001 0.94508 0.98276 1.02426 1.19100 0.91556 0.92992 0.89335 1.18835 0.93245 0.95297 1.22657 1.20633 0.92789 0.96682 0.94855 1.21462 0.99118 0.95749 1.12852 1.18713 0.88558 0.91667 0.88391 1.19972 0.94945 0.94700 1.32240 0.88998 1.26281 0.95090 1.00986 0.94682 1.70082 1.07209 1.28626 1.24816 0.86179 0.80476 0.80144 0.79406 1.18973 1.19684 1.18148 1.68824 1.07414 1.25087 1.18649 1.22792 0.98787 0.88145 0.90481 1.22322 1.01587 0.93735 1.02737 1.22427 0.88190 0.98090 0.95753 1.67402 1.10732 1.26004 1.16346 0.84250 0.87967 0.87787 0.90729 0.85788 0.84661 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.01 18.54 41.84 0.78 -6.23 15 2 C 0.28 4.46 15.53 -22.48 -0.35 4.11 15 3 C 0.19 2.93 6.58 -85.14 -0.56 2.37 15 4 C -0.15 -2.33 9.19 -38.61 -0.35 -2.68 15 5 C 0.08 1.30 5.91 -104.61 -0.62 0.68 15 6 C -0.29 -5.73 5.92 -104.46 -0.62 -6.35 15 7 C -0.03 -0.51 9.49 -39.38 -0.37 -0.89 15 8 C -0.27 -5.78 9.77 -39.14 -0.38 -6.16 15 9 C 0.25 6.05 6.55 -84.98 -0.56 5.50 15 10 C -0.39 -9.21 9.12 -37.80 -0.34 -9.55 15 11 H 0.09 1.98 7.85 -52.49 -0.41 1.57 15 12 C 0.06 1.32 5.50 -17.32 -0.10 1.23 15 13 N -0.69 -16.44 11.44 55.56 0.64 -15.81 15 14 Si 0.91 16.42 29.56 -169.99 -5.02 11.39 15 15 H -0.26 -4.72 7.11 56.52 0.40 -4.32 15 16 H -0.27 -4.82 7.11 56.52 0.40 -4.42 15 17 H -0.26 -4.53 7.11 56.52 0.40 -4.13 15 18 N -0.49 -12.11 7.84 -10.85 -0.09 -12.20 15 19 C 0.17 3.66 10.62 -17.14 -0.18 3.48 15 20 C -0.18 -2.56 9.52 -38.93 -0.37 -2.93 15 21 C 0.11 1.47 11.16 -17.64 -0.20 1.28 15 22 N -0.49 -7.52 10.26 -11.26 -0.12 -7.63 15 23 H 0.14 2.05 6.35 -52.48 -0.33 1.71 15 24 H 0.10 1.63 6.38 -52.48 -0.33 1.29 15 25 H 0.10 2.02 8.06 -52.48 -0.42 1.60 15 26 H 0.28 6.02 8.29 -40.82 -0.34 5.69 15 27 H 0.12 2.38 6.30 -52.49 -0.33 2.05 15 28 H 0.14 1.64 6.38 -52.49 -0.33 1.30 15 29 H 0.16 1.48 8.06 -52.48 -0.42 1.05 15 LS Contribution 271.47 15.07 4.09 4.09 Total: -1.00 -26.47 271.47 -6.45 -32.92 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -1.72 Total: 3.39 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -5.00 Total: -9.93 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 1.21 Total: -41.87 kcal Atomic # 14 Polarization: 16.42 SS G_CDS: -5.02 Total: 11.39 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.47 -6.45 -32.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241189545.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.312 kcal (2) G-P(sol) polarization free energy of solvation -26.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds