Wall clock time and date at job start Mon Mar 30 2020 18:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39224 * 119.67290 * 199.38360 * 3 2 1 5 5 C 1.39860 * 118.88189 * 180.27015 * 4 3 2 6 6 C 1.48022 * 120.88395 * 179.71431 * 5 4 3 7 7 C 1.40224 * 120.34122 * 179.72639 * 6 5 4 8 8 C 1.36730 * 118.60532 * 180.02562 * 7 6 5 9 9 C 1.40848 * 119.24478 * 359.97438 * 8 7 6 10 10 C 1.41036 * 119.68109 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00200 * 359.97438 * 10 9 8 12 12 C 1.40155 * 119.99869 * 180.02562 * 10 9 8 13 13 N 1.30680 * 119.99696 * 359.72591 * 12 10 9 14 14 Si 1.86795 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47088 * 89.99913 * 14 12 10 16 16 H 1.48495 * 109.47293 * 210.00115 * 14 12 10 17 17 H 1.48507 * 109.47015 * 330.00073 * 14 12 10 18 18 N 1.33769 * 120.63320 * 0.27981 * 9 8 7 19 19 C 1.31197 * 121.50746 * 359.42843 * 18 9 8 20 20 C 1.40023 * 118.22806 * 359.44556 * 5 4 3 21 21 C 1.38181 * 119.21504 * 0.27151 * 20 5 4 22 22 N 1.31664 * 121.06657 * 0.02562 * 21 20 5 23 23 H 1.08005 * 120.55961 * 0.02562 * 4 3 2 24 24 H 1.08004 * 120.70021 * 0.03639 * 7 6 5 25 25 H 1.08005 * 120.37906 * 180.02562 * 8 7 6 26 26 H 0.97000 * 119.99992 * 180.02562 * 13 12 10 27 27 H 1.07999 * 119.64977 * 180.26627 * 19 18 9 28 28 H 1.08001 * 120.39624 * 180.29317 * 20 5 4 29 29 H 1.08007 * 119.46769 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2566 1.1420 0.4015 5 6 4.6551 1.1264 0.3896 6 6 5.4318 2.3172 0.8015 7 6 6.8337 2.2871 0.7907 8 6 7.5155 3.4070 1.1786 9 6 6.7935 4.5497 1.5742 10 6 7.4875 5.7101 1.9756 11 1 8.5674 5.7194 1.9790 12 6 6.7756 6.8508 2.3711 13 7 5.4689 6.8409 2.3628 14 14 7.6948 8.3878 2.9020 15 1 7.9369 9.2530 1.7196 16 1 6.8835 9.1297 3.9003 17 1 8.9947 8.0027 3.5081 18 7 5.4558 4.5434 1.5778 19 6 4.7742 3.4859 1.2057 20 6 5.3008 -0.0477 -0.0168 21 6 4.5418 -1.1389 -0.3942 22 7 3.2261 -1.0898 -0.3776 23 1 2.7200 2.0261 0.7130 24 1 7.3637 1.3980 0.4823 25 1 8.5956 3.4155 1.1809 26 1 4.9762 7.6305 2.6362 27 1 3.6946 3.5152 1.2161 28 1 6.3794 -0.1000 -0.0347 29 1 5.0356 -2.0465 -0.7088 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241189545.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:44 Heat of formation + Delta-G solvation = 79.146308 kcal Electronic energy + Delta-G solvation = -16168.918630 eV Core-core repulsion = 13442.264665 eV Total energy + Delta-G solvation = -2726.653964 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27809 -39.90673 -37.67332 -35.90697 -34.30103 -32.87676 -32.19681 -31.04863 -27.79265 -25.71688 -24.81489 -23.31381 -22.61644 -19.86682 -19.49432 -17.91271 -17.18530 -17.04444 -16.27062 -15.82359 -15.67797 -15.67435 -14.89933 -14.43013 -14.34285 -14.29821 -14.00604 -13.80816 -13.80565 -12.96591 -12.92223 -12.75626 -12.58561 -12.21894 -11.80098 -11.63850 -10.95250 -10.61129 -10.17215 -10.09208 -9.54968 -9.22080 -8.40722 -6.56636 -0.39080 -0.01442 1.02582 1.24459 1.41218 1.41363 1.52673 1.55876 1.90347 2.17961 2.49323 2.74323 3.07567 3.73244 3.90924 3.91631 4.05415 4.11802 4.20415 4.27083 4.60133 4.76512 4.85503 4.87419 5.00443 5.11344 5.26781 5.45612 5.61507 5.75906 5.87588 6.06122 6.18942 6.23556 6.60655 6.85417 6.87232 8.09946 8.30943 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.036926 B = 0.004702 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.081463 B = 5953.521825 C = 6701.757786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.292 3.708 3 C 0.182 3.818 4 C -0.143 4.143 5 C 0.054 3.946 6 C -0.279 4.279 7 C -0.024 4.024 8 C -0.287 4.287 9 C 0.219 3.781 10 C -0.437 4.437 11 H 0.099 0.901 12 C 0.019 3.981 13 N -0.738 5.738 14 Si 0.989 3.011 15 H -0.262 1.262 16 H -0.270 1.270 17 H -0.251 1.251 18 N -0.526 5.526 19 C 0.141 3.859 20 C -0.161 4.161 21 C 0.122 3.878 22 N -0.496 5.496 23 H 0.141 0.859 24 H 0.145 0.855 25 H 0.118 0.882 26 H 0.284 0.716 27 H 0.135 0.865 28 H 0.164 0.836 29 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.936 -7.188 -2.476 8.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.025 4.025 3 C 0.046 3.954 4 C -0.166 4.166 5 C 0.046 3.954 6 C -0.285 4.285 7 C -0.047 4.047 8 C -0.309 4.309 9 C 0.096 3.904 10 C -0.466 4.466 11 H 0.117 0.883 12 C -0.205 4.205 13 N -0.359 5.359 14 Si 0.809 3.191 15 H -0.187 1.187 16 H -0.194 1.194 17 H -0.174 1.174 18 N -0.239 5.239 19 C -0.028 4.028 20 C -0.181 4.181 21 C -0.036 4.036 22 N -0.208 5.208 23 H 0.158 0.842 24 H 0.163 0.837 25 H 0.136 0.864 26 H 0.095 0.905 27 H 0.153 0.847 28 H 0.181 0.819 29 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.130 -7.004 -2.404 7.490 hybrid contribution 1.316 0.853 0.281 1.593 sum 2.446 -6.151 -2.123 6.951 Atomic orbital electron populations 1.81197 1.12418 1.08449 1.09100 1.25257 0.91969 0.92432 0.92845 1.16073 0.85213 0.91886 1.02243 1.22041 0.94520 0.98469 1.01600 1.19056 0.91711 0.93179 0.91441 1.19076 0.93839 0.95401 1.20135 1.21050 0.92728 0.97403 0.93563 1.21671 0.99990 0.95818 1.13446 1.19166 0.88890 0.93155 0.89140 1.20263 0.95480 0.95779 1.35117 0.88277 1.27142 0.95687 1.03690 0.93979 1.70180 1.08798 1.29690 1.27190 0.85088 0.79165 0.75999 0.78869 1.18654 1.19408 1.17420 1.68749 1.08212 1.26840 1.20089 1.23128 0.99537 0.88763 0.91350 1.22676 1.03123 0.92436 0.99866 1.23148 0.87152 0.99257 0.94017 1.67474 1.12082 1.25655 1.15588 0.84160 0.83741 0.86354 0.90518 0.84749 0.81878 0.78015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -14.31 18.54 19.00 0.35 -13.95 15 2 C 0.29 8.84 15.53 88.33 1.37 10.21 15 3 C 0.18 5.20 6.58 40.47 0.27 5.46 15 4 C -0.14 -4.20 9.19 22.90 0.21 -3.99 15 5 C 0.05 1.65 5.91 -19.86 -0.12 1.53 15 6 C -0.28 -10.48 5.92 -19.76 -0.12 -10.60 15 7 C -0.02 -0.89 9.49 22.40 0.21 -0.68 15 8 C -0.29 -12.27 9.77 22.56 0.22 -12.05 15 9 C 0.22 11.07 6.55 40.17 0.26 11.33 15 10 C -0.44 -21.56 9.12 23.42 0.21 -21.35 15 11 H 0.10 4.46 7.85 -2.91 -0.02 4.43 15 12 C 0.02 0.90 5.50 85.33 0.47 1.36 15 13 N -0.74 -37.22 11.44 21.86 0.25 -36.97 15 14 Si 0.99 34.75 29.56 68.60 2.03 36.78 15 15 H -0.26 -8.94 7.11 99.48 0.71 -8.23 15 16 H -0.27 -9.18 7.11 99.48 0.71 -8.48 15 17 H -0.25 -8.38 7.11 99.48 0.71 -7.67 15 18 N -0.53 -27.24 7.84 -188.24 -1.48 -28.72 15 19 C 0.14 6.20 10.62 85.23 0.91 7.11 15 20 C -0.16 -3.68 9.52 22.69 0.22 -3.46 15 21 C 0.12 2.51 11.16 84.70 0.95 3.46 15 22 N -0.50 -13.17 10.26 -189.53 -1.94 -15.12 15 23 H 0.14 4.04 6.35 -2.91 -0.02 4.02 15 24 H 0.15 3.91 6.38 -2.91 -0.02 3.90 15 25 H 0.12 4.54 8.06 -2.91 -0.02 4.52 15 26 H 0.28 12.90 8.29 -92.71 -0.77 12.13 15 27 H 0.14 5.33 6.30 -2.91 -0.02 5.32 15 28 H 0.16 2.88 6.38 -2.91 -0.02 2.86 15 29 H 0.20 2.37 8.06 -2.91 -0.02 2.35 15 Total: -1.00 -59.97 271.47 5.48 -54.49 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 1.21 Total: 15.15 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 5.06 Total: -11.65 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -2.82 Total: -94.76 kcal Atomic # 14 Polarization: 34.75 SS G_CDS: 2.03 Total: 36.78 kcal Total: -59.97 5.48 -54.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241189545.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.636 kcal (2) G-P(sol) polarization free energy of solvation -59.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds