Wall clock time and date at job start Mon Mar 30 2020 18:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39204 * 119.66937 * 39.52305 * 3 2 1 5 5 C 1.39910 * 118.87363 * 179.79302 * 4 3 2 6 6 C 1.47901 * 120.89184 * 180.24015 * 5 4 3 7 7 C 1.39264 * 120.77515 * 310.23651 * 6 5 4 8 8 N 1.31698 * 120.66627 * 179.97438 * 7 6 5 9 9 C 1.32184 * 122.49847 * 0.02562 * 8 7 6 10 10 C 1.36538 * 121.49700 * 0.02628 * 9 8 7 11 11 C 1.41093 * 119.09842 * 359.67705 * 10 9 8 12 12 C 1.40974 * 121.10539 * 180.31761 * 11 10 9 13 13 H 1.08006 * 119.99979 * 154.84988 * 12 11 10 14 14 C 1.40212 * 120.00045 * 334.84892 * 12 11 10 15 15 N 1.30657 * 120.00138 * 344.16789 * 14 12 11 16 16 Si 1.86802 * 120.00211 * 164.16994 * 14 12 11 17 17 H 1.48506 * 109.47130 * 89.99780 * 16 14 12 18 18 H 1.48497 * 109.47453 * 210.00384 * 16 14 12 19 19 H 1.48504 * 109.46828 * 330.00217 * 16 14 12 20 20 C 1.40074 * 118.22143 * 0.47145 * 5 4 3 21 21 C 1.38166 * 119.20784 * 359.74708 * 20 5 4 22 22 N 1.31671 * 121.07126 * 0.02562 * 21 20 5 23 23 H 1.08005 * 120.56501 * 0.02562 * 4 3 2 24 24 H 1.07994 * 119.66559 * 359.97438 * 7 6 5 25 25 H 1.08000 * 119.24882 * 180.02562 * 9 8 7 26 26 H 1.08001 * 120.45083 * 179.97438 * 10 9 8 27 27 H 0.97001 * 120.00444 * 179.97438 * 15 14 12 28 28 H 1.07996 * 120.39696 * 179.72600 * 20 5 4 29 29 H 1.08001 * 119.46289 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2575 -0.9321 -0.7697 5 6 4.6564 -0.9136 -0.7608 6 6 5.4337 -1.8806 -1.5659 7 6 5.1539 -3.2436 -1.5082 8 7 5.8471 -4.1026 -2.2264 9 6 6.8296 -3.7286 -3.0277 10 6 7.1849 -2.4166 -3.1564 11 6 6.4808 -1.4397 -2.4211 12 6 6.8077 -0.0725 -2.5269 13 1 6.0622 0.6791 -2.3130 14 6 8.1007 0.3115 -2.9099 15 7 9.0783 -0.5543 -2.8694 16 14 8.4257 2.0612 -3.4778 17 1 8.7907 2.9014 -2.3089 18 1 9.5416 2.0645 -4.4576 19 1 7.2030 2.6088 -4.1184 20 6 5.3012 0.0419 0.0350 21 6 4.5409 0.9288 0.7729 22 7 3.2253 0.8879 0.7389 23 1 2.7216 -1.6552 -1.3667 24 1 4.3604 -3.5996 -0.8679 25 1 7.3635 -4.4779 -3.5933 26 1 7.9908 -2.1299 -3.8158 27 1 9.9728 -0.2888 -3.1347 28 1 6.3797 0.0847 0.0716 29 1 5.0338 1.6675 1.3875 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241195791.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:51 Heat of formation + Delta-G solvation = 71.700620 kcal Electronic energy + Delta-G solvation = -16692.927914 eV Core-core repulsion = 13965.951081 eV Total energy + Delta-G solvation = -2726.976834 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.30218 -39.96833 -37.64112 -36.10250 -34.66077 -32.61086 -32.13079 -30.63310 -28.02418 -25.56680 -24.96469 -23.28865 -22.71917 -19.84779 -19.41582 -17.63365 -17.24739 -16.95412 -16.33738 -16.14321 -15.95448 -15.56746 -15.02413 -14.44018 -14.29508 -14.19449 -14.03491 -13.88777 -13.79082 -13.22503 -13.00323 -12.81158 -12.68823 -12.02746 -11.82017 -11.30170 -10.87922 -10.66370 -10.08113 -9.90922 -9.80364 -9.35322 -8.73768 -6.56763 -0.33525 0.10065 0.96229 1.00063 1.42685 1.43668 1.53143 1.59077 1.85828 2.17251 2.49873 2.75306 2.98139 3.65866 3.76523 3.93440 4.06008 4.12091 4.21235 4.50840 4.54803 4.74471 4.93539 4.97384 5.05844 5.19438 5.43613 5.44823 5.57622 5.68759 5.90313 6.14374 6.24963 6.48241 6.75488 6.76984 6.83586 7.71054 8.17516 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.018183 B = 0.008009 C = 0.006024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.515214 B = 3495.221970 C = 4647.181543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.295 3.705 3 C 0.174 3.826 4 C -0.120 4.120 5 C 0.051 3.949 6 C -0.253 4.253 7 C 0.132 3.868 8 N -0.592 5.592 9 C 0.081 3.919 10 C -0.228 4.228 11 C 0.125 3.875 12 C -0.454 4.454 13 H 0.089 0.911 14 C 0.047 3.953 15 N -0.798 5.798 16 Si 0.973 3.027 17 H -0.254 1.254 18 H -0.270 1.270 19 H -0.262 1.262 20 C -0.125 4.125 21 C 0.112 3.888 22 N -0.480 5.480 23 H 0.149 0.851 24 H 0.150 0.850 25 H 0.139 0.861 26 H 0.117 0.883 27 H 0.296 0.704 28 H 0.142 0.858 29 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 4.035 2.615 4.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.022 4.022 3 C 0.037 3.963 4 C -0.143 4.143 5 C 0.043 3.957 6 C -0.259 4.259 7 C -0.026 4.026 8 N -0.307 5.307 9 C -0.066 4.066 10 C -0.251 4.251 11 C 0.117 3.883 12 C -0.484 4.484 13 H 0.107 0.893 14 C -0.173 4.173 15 N -0.422 5.422 16 Si 0.794 3.206 17 H -0.178 1.178 18 H -0.194 1.194 19 H -0.185 1.185 20 C -0.146 4.146 21 C -0.046 4.046 22 N -0.192 5.192 23 H 0.167 0.833 24 H 0.167 0.833 25 H 0.157 0.843 26 H 0.135 0.865 27 H 0.107 0.893 28 H 0.160 0.840 29 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.495 3.667 3.097 5.410 hybrid contribution 1.638 0.697 -1.021 2.052 sum -0.857 4.363 2.077 4.908 Atomic orbital electron populations 1.81198 1.12222 1.08649 1.08882 1.25116 0.91741 0.92630 0.92673 1.16105 0.85375 0.96116 0.98738 1.22183 0.93809 0.99098 0.99225 1.18903 0.91599 0.93183 0.92056 1.19539 1.06362 0.93519 1.06431 1.22542 0.96352 0.88736 0.95021 1.67416 1.11181 1.39110 1.12992 1.22073 0.93919 0.94809 0.95827 1.21946 1.04859 0.93754 1.04514 1.18027 0.88621 0.94196 0.87465 1.19802 0.96932 0.92244 1.39408 0.89256 1.26746 0.95115 1.03606 0.91803 1.69746 1.02401 1.38325 1.31753 0.85299 0.78945 0.76945 0.79409 1.17839 1.19431 1.18543 1.22719 1.02610 0.94599 0.94683 1.23045 0.87255 0.97567 0.96768 1.67464 1.11632 1.21343 1.18729 0.83328 0.83322 0.84324 0.86548 0.89304 0.83996 0.78503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -14.05 18.54 19.00 0.35 -13.70 15 2 C 0.29 8.94 15.53 88.33 1.37 10.31 15 3 C 0.17 5.17 6.58 40.46 0.27 5.43 15 4 C -0.12 -3.66 9.36 22.91 0.21 -3.44 15 5 C 0.05 1.77 5.00 -19.87 -0.10 1.67 15 6 C -0.25 -10.40 5.58 -19.49 -0.11 -10.51 15 7 C 0.13 5.34 10.73 84.96 0.91 6.25 15 8 N -0.59 -26.00 10.32 -196.20 -2.02 -28.02 15 9 C 0.08 3.54 11.09 84.24 0.93 4.48 15 10 C -0.23 -10.65 8.73 22.57 0.20 -10.45 15 11 C 0.12 5.72 5.60 -20.93 -0.12 5.61 15 12 C -0.45 -19.99 7.38 23.42 0.17 -19.81 15 13 H 0.09 3.78 6.72 -2.91 -0.02 3.76 15 14 C 0.05 1.98 5.21 85.35 0.44 2.43 15 15 N -0.80 -35.18 10.95 21.87 0.24 -34.94 15 16 Si 0.97 32.04 29.59 68.60 2.03 34.07 15 17 H -0.25 -7.93 7.11 99.48 0.71 -7.22 15 18 H -0.27 -8.69 7.11 99.48 0.71 -7.98 15 19 H -0.26 -8.74 7.11 99.48 0.71 -8.03 15 20 C -0.13 -3.89 8.20 22.70 0.19 -3.70 15 21 C 0.11 2.92 11.16 84.70 0.95 3.86 15 22 N -0.48 -14.06 10.26 -189.55 -1.94 -16.01 15 23 H 0.15 4.12 8.06 -2.91 -0.02 4.10 15 24 H 0.15 5.09 8.06 -2.91 -0.02 5.07 15 25 H 0.14 5.34 8.06 -2.91 -0.02 5.32 15 26 H 0.12 5.57 6.25 -2.91 -0.02 5.56 15 27 H 0.30 11.75 8.29 -92.71 -0.77 10.98 15 28 H 0.14 4.60 7.45 -2.91 -0.02 4.58 15 29 H 0.20 3.58 8.06 -2.91 -0.02 3.56 15 Total: -1.00 -51.96 272.06 5.17 -46.79 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 1.20 Total: 19.69 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 5.32 Total: -7.88 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -3.38 Total: -92.67 kcal Atomic # 14 Polarization: 32.04 SS G_CDS: 2.03 Total: 34.07 kcal Total: -51.96 5.17 -46.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241195791.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.488 kcal (2) G-P(sol) polarization free energy of solvation -51.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds