Wall clock time and date at job start Mon Mar 30 2020 18:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39591 * 119.60812 * 227.48558 * 3 2 1 5 5 C 1.38199 * 119.18007 * 179.97438 * 4 3 2 6 6 C 1.39828 * 118.40432 * 359.97438 * 5 4 3 7 7 C 1.48293 * 120.42766 * 180.02562 * 6 5 4 8 8 C 1.39767 * 120.41690 * 0.02562 * 7 6 5 9 9 N 1.31897 * 121.14306 * 179.97438 * 8 7 6 10 10 C 1.31532 * 122.13214 * 0.02562 * 9 8 7 11 11 C 1.40781 * 120.67516 * 0.25791 * 10 9 8 12 12 C 1.41441 * 120.59892 * 179.74857 * 11 10 9 13 13 H 1.08001 * 120.00529 * 23.39461 * 12 11 10 14 14 C 1.39936 * 119.99783 * 203.40081 * 12 11 10 15 15 N 1.30835 * 119.99915 * 17.38060 * 14 12 11 16 16 Si 1.86797 * 120.00318 * 197.37900 * 14 12 11 17 17 H 1.48497 * 109.46887 * 89.99585 * 16 14 12 18 18 H 1.48498 * 109.47416 * 210.00233 * 16 14 12 19 19 H 1.48508 * 109.46941 * 330.00406 * 16 14 12 20 20 C 1.39206 * 120.42215 * 179.97438 * 7 6 5 21 21 C 1.39604 * 119.14372 * 0.27504 * 6 5 4 22 22 N 1.31408 * 120.74765 * 359.42758 * 21 6 5 23 23 H 1.07997 * 120.40955 * 359.95757 * 4 3 2 24 24 H 1.07997 * 120.80010 * 180.02562 * 5 4 3 25 25 H 1.08002 * 119.43027 * 359.97438 * 8 7 6 26 26 H 1.07992 * 119.66550 * 179.97438 * 10 9 8 27 27 H 0.96997 * 120.00209 * 179.97438 * 15 14 12 28 28 H 1.08010 * 120.95223 * 0.02562 * 20 7 6 29 29 H 1.08008 * 119.62859 * 179.72434 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2572 0.8211 0.8946 5 6 4.6392 0.8143 0.8873 6 6 5.2955 -0.0207 -0.0222 7 6 6.7771 -0.0637 -0.0681 8 6 7.5353 0.7295 0.7976 9 7 8.8536 0.7021 0.7694 10 6 9.5197 -0.0646 -0.0664 11 6 8.8394 -0.8929 -0.9791 12 6 9.5572 -1.7128 -1.8808 13 1 10.5706 -2.0083 -1.6524 14 6 8.9545 -2.1410 -3.0688 15 7 7.8862 -1.5327 -3.5166 16 14 9.6750 -3.5811 -4.0156 17 1 9.0586 -4.8451 -3.5386 18 1 9.3966 -3.4102 -5.4642 19 1 11.1429 -3.6327 -3.7963 20 6 7.4304 -0.8955 -0.9733 21 6 4.5380 -0.8093 -0.8900 22 7 3.2248 -0.7808 -0.8504 23 1 2.7172 1.4535 1.5836 24 1 5.1988 1.4383 1.5683 25 1 7.0329 1.3761 1.5019 26 1 10.5996 -0.0553 -0.0555 27 1 7.4685 -1.8293 -4.3403 28 1 6.8731 -1.5209 -1.6552 29 1 5.0369 -1.4538 -1.5987 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241428045.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:21:16 Heat of formation + Delta-G solvation = 85.326255 kcal Electronic energy + Delta-G solvation = -16355.846980 eV Core-core repulsion = 13629.460998 eV Total energy + Delta-G solvation = -2726.385982 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23810 -38.40403 -36.47744 -34.33797 -33.29507 -32.12657 -30.55720 -29.12162 -25.96892 -24.57531 -23.81654 -21.51475 -20.99755 -19.32476 -17.64974 -16.39321 -16.09664 -15.52494 -15.09938 -14.57407 -14.55770 -14.27268 -13.61549 -13.17049 -13.01557 -12.95678 -12.70496 -12.42280 -12.25952 -11.73035 -11.60694 -11.45648 -11.12710 -10.72235 -10.11156 -10.05010 -9.64620 -9.52675 -9.43859 -8.33640 -8.12962 -7.58323 -7.05496 -4.70330 0.52461 1.33369 2.32302 2.55877 2.63135 2.93805 2.96506 3.03036 3.14788 3.62831 3.71682 4.05418 4.42093 4.72050 4.94840 5.05785 5.09640 5.41063 5.42360 5.67477 5.75222 6.07144 6.17053 6.27364 6.49973 6.65635 6.76071 6.87900 6.95353 7.36169 7.38221 7.59386 7.64014 7.90551 8.17907 8.43432 8.46880 9.37413 9.85267 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.023405 B = 0.005925 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.046528 B = 4724.382413 C = 5843.611649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.280 3.720 3 C 0.151 3.849 4 C -0.112 4.112 5 C -0.085 4.085 6 C -0.019 4.019 7 C -0.104 4.104 8 C -0.019 4.019 9 N -0.467 5.467 10 C -0.009 4.009 11 C 0.059 3.941 12 C -0.444 4.444 13 H 0.087 0.913 14 C 0.074 3.926 15 N -0.787 5.787 16 Si 0.914 3.086 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.107 4.107 21 C 0.109 3.891 22 N -0.446 5.446 23 H 0.141 0.859 24 H 0.148 0.852 25 H 0.124 0.876 26 H 0.130 0.870 27 H 0.287 0.713 28 H 0.135 0.865 29 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.093 0.867 3.290 4.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.037 4.037 3 C 0.014 3.986 4 C -0.134 4.134 5 C -0.110 4.110 6 C -0.022 4.022 7 C -0.107 4.107 8 C -0.178 4.178 9 N -0.174 5.174 10 C -0.170 4.170 11 C 0.054 3.946 12 C -0.473 4.473 13 H 0.105 0.895 14 C -0.145 4.145 15 N -0.411 5.411 16 Si 0.738 3.262 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.133 4.133 21 C -0.052 4.052 22 N -0.156 5.156 23 H 0.159 0.841 24 H 0.166 0.834 25 H 0.141 0.859 26 H 0.147 0.853 27 H 0.099 0.901 28 H 0.153 0.847 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.053 0.878 3.084 5.985 hybrid contribution 0.727 -0.621 -0.665 1.165 sum -4.326 0.257 2.419 4.963 Atomic orbital electron populations 1.81199 1.11697 1.08097 1.08004 1.25119 0.91804 0.93381 0.93350 1.16328 0.85822 0.98895 0.97585 1.21839 0.94802 0.98471 0.98336 1.21648 0.93194 0.98001 0.98206 1.20255 0.94891 0.93573 0.93524 1.19289 0.89536 1.01678 1.00170 1.21778 0.89595 1.04038 1.02345 1.66965 1.09076 1.19826 1.21553 1.22614 0.98483 0.97575 0.98350 1.18477 0.92267 0.91283 0.92529 1.19616 1.00848 1.25279 1.01563 0.89527 1.26000 0.94363 0.96635 0.97532 1.69741 1.17445 1.34391 1.19544 0.86186 0.80638 0.80971 0.78383 1.18967 1.20047 1.18350 1.21885 0.94814 0.99001 0.97560 1.23063 0.87312 0.97347 0.97451 1.67486 1.10711 1.18006 1.19375 0.84114 0.83448 0.85857 0.85288 0.90146 0.84724 0.80940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.48 18.54 41.84 0.78 -5.71 15 2 C 0.28 4.07 15.52 -22.48 -0.35 3.72 15 3 C 0.15 2.16 6.59 -84.99 -0.56 1.60 15 4 C -0.11 -1.34 9.78 -39.09 -0.38 -1.72 15 5 C -0.09 -1.14 9.53 -39.00 -0.37 -1.51 15 6 C -0.02 -0.31 5.90 -104.66 -0.62 -0.93 15 7 C -0.10 -2.06 5.88 -104.83 -0.62 -2.68 15 8 C -0.02 -0.39 10.61 -16.95 -0.18 -0.57 15 9 N -0.47 -10.36 10.32 -12.27 -0.13 -10.49 15 10 C -0.01 -0.21 10.96 -16.72 -0.18 -0.39 15 11 C 0.06 1.39 5.59 -106.71 -0.60 0.79 15 12 C -0.44 -10.29 9.08 -37.73 -0.34 -10.64 15 13 H 0.09 1.91 7.90 -52.49 -0.41 1.50 15 14 C 0.07 1.63 5.18 -17.34 -0.09 1.54 15 15 N -0.79 -17.73 10.92 55.55 0.61 -17.12 15 16 Si 0.91 16.63 29.59 -169.99 -5.03 11.60 15 17 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 18 H -0.28 -4.97 7.11 56.52 0.40 -4.57 15 19 H -0.26 -4.70 7.11 56.52 0.40 -4.29 15 20 C -0.11 -2.39 8.18 -38.22 -0.31 -2.70 15 21 C 0.11 1.81 10.60 -17.22 -0.18 1.63 15 22 N -0.45 -7.26 10.26 -10.86 -0.11 -7.37 15 23 H 0.14 1.22 8.06 -52.49 -0.42 0.80 15 24 H 0.15 1.66 6.32 -52.49 -0.33 1.32 15 25 H 0.12 2.07 6.26 -52.49 -0.33 1.74 15 26 H 0.13 2.70 8.06 -52.49 -0.42 2.28 15 27 H 0.29 5.91 8.30 -40.82 -0.34 5.57 15 28 H 0.14 2.97 4.46 -52.48 -0.23 2.74 15 29 H 0.17 2.90 6.27 -52.48 -0.33 2.57 15 LS Contribution 269.98 15.07 4.07 4.07 Total: -1.00 -25.40 269.98 -6.22 -31.62 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -1.62 Total: 5.25 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -4.78 Total: -11.85 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 1.14 Total: -40.69 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -25.40 -6.22 -31.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241428045.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.950 kcal (2) G-P(sol) polarization free energy of solvation -25.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds