Wall clock time and date at job start Mon Mar 30 2020 18:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39566 * 120.45482 * 119.89117 * 3 2 1 5 5 C 1.37728 * 120.19093 * 179.97438 * 4 3 2 6 6 C 1.39815 * 121.16658 * 0.04200 * 5 4 3 7 7 C 1.48338 * 119.53282 * 179.97438 * 6 5 4 8 8 C 1.40055 * 121.13711 * 359.72579 * 7 6 5 9 9 C 1.38350 * 117.83707 * 179.73533 * 8 7 6 10 10 N 1.32011 * 119.96232 * 0.54430 * 9 8 7 11 11 N 1.28278 * 122.49728 * 359.71538 * 10 9 8 12 12 C 1.31831 * 122.31301 * 0.02562 * 11 10 9 13 13 C 1.38577 * 120.92858 * 359.69873 * 6 5 4 14 14 C 1.40632 * 119.73342 * 0.53071 * 13 6 5 15 15 C 1.40839 * 120.55536 * 179.77110 * 14 13 6 16 16 H 1.08001 * 119.99663 * 152.51761 * 15 14 13 17 17 C 1.40242 * 119.99668 * 332.23957 * 15 14 13 18 18 N 1.30656 * 119.99354 * 162.99326 * 17 15 14 19 19 Si 1.86794 * 120.00165 * 342.98978 * 17 15 14 20 20 H 1.48506 * 109.47175 * 95.13290 * 19 17 15 21 21 H 1.48504 * 109.46832 * 215.12999 * 19 17 15 22 22 H 1.48498 * 109.47418 * 335.12839 * 19 17 15 23 23 H 1.08004 * 119.90467 * 359.97438 * 4 3 2 24 24 H 1.07998 * 119.41819 * 180.02562 * 5 4 3 25 25 H 1.08002 * 121.08387 * 359.97352 * 8 7 6 26 26 H 1.07998 * 120.01902 * 180.26057 * 9 8 7 27 27 H 1.07998 * 120.17140 * 179.97438 * 12 11 10 28 28 H 1.08002 * 120.13880 * 180.30682 * 13 6 5 29 29 H 0.97004 * 119.99671 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2751 0.6005 -1.0431 5 6 4.6524 0.5984 -1.0373 6 6 5.3707 0.0006 0.0026 7 6 6.8536 0.0190 -0.0281 8 6 7.5487 0.6205 -1.0848 9 6 8.9314 0.6031 -1.0414 10 7 9.5521 0.0224 -0.0314 11 7 8.9213 -0.5349 0.9366 12 6 7.6046 -0.5686 0.9930 13 6 4.7168 -0.6038 1.0644 14 6 3.3110 -0.6283 1.0951 15 6 2.6287 -1.2421 2.1634 16 1 1.6394 -0.9060 2.4365 17 6 3.2317 -2.2937 2.8686 18 7 2.7723 -2.6419 4.0411 19 14 4.6916 -3.1965 2.1317 20 1 5.9518 -2.6032 2.6467 21 1 4.6289 -4.6311 2.5104 22 1 4.6546 -3.0730 0.6523 23 1 2.7407 1.0677 -1.8571 24 1 5.1869 1.0666 -1.8505 25 1 7.0224 1.0862 -1.9049 26 1 9.5027 1.0604 -1.8357 27 1 7.1091 -1.0476 1.8245 28 1 5.2844 -1.0575 1.8635 29 1 3.1896 -3.3690 4.5292 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242055437.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:21:32 Heat of formation + Delta-G solvation = 97.554322 kcal Electronic energy + Delta-G solvation = -16693.699168 eV Core-core repulsion = 13967.843435 eV Total energy + Delta-G solvation = -2725.855733 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79724 -38.23129 -35.52878 -34.43498 -33.29016 -32.51693 -30.97689 -29.55335 -26.14213 -24.77794 -24.22097 -21.82980 -21.17106 -18.16682 -17.93867 -16.99174 -16.82225 -15.97073 -15.23478 -14.71692 -14.39479 -13.90628 -13.86052 -13.48159 -13.10936 -12.93010 -12.39674 -12.20042 -11.91079 -11.78626 -11.39400 -11.21409 -10.91562 -10.76509 -10.31958 -10.09977 -10.02420 -9.90740 -9.62320 -9.49346 -8.18768 -7.77120 -7.47242 -5.01730 0.54480 1.05576 1.96955 2.26899 2.75639 2.91907 2.98887 3.53779 3.59370 3.68975 4.01605 4.24096 4.27880 4.60171 4.66860 4.83218 5.02082 5.03123 5.13136 5.39715 5.62277 5.81631 5.88417 6.01714 6.11375 6.31711 6.39676 6.65066 6.72186 7.04026 7.12199 7.29781 7.50371 7.78420 8.04751 8.19100 8.57567 8.85606 9.51228 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.019636 B = 0.008648 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.585018 B = 3236.844185 C = 4494.297854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.293 3.707 3 C -0.159 4.159 4 C -0.013 4.013 5 C -0.238 4.238 6 C -0.001 4.001 7 C -0.020 4.020 8 C -0.123 4.123 9 C 0.039 3.961 10 N -0.263 5.263 11 N -0.244 5.244 12 C 0.039 3.961 13 C -0.206 4.206 14 C 0.120 3.880 15 C -0.403 4.403 16 H 0.101 0.899 17 C 0.080 3.920 18 N -0.765 5.765 19 Si 0.906 3.094 20 H -0.259 1.259 21 H -0.280 1.280 22 H -0.234 1.234 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.153 0.847 26 H 0.169 0.831 27 H 0.172 0.828 28 H 0.112 0.888 29 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.862 2.610 -6.768 11.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.018 4.018 3 C -0.165 4.165 4 C -0.034 4.034 5 C -0.257 4.257 6 C -0.003 4.003 7 C -0.031 4.031 8 C -0.151 4.151 9 C -0.124 4.124 10 N -0.105 5.105 11 N -0.084 5.084 12 C -0.126 4.126 13 C -0.226 4.226 14 C 0.115 3.885 15 C -0.429 4.429 16 H 0.119 0.881 17 C -0.146 4.146 18 N -0.385 5.385 19 Si 0.731 3.269 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.157 1.157 23 H 0.128 0.872 24 H 0.126 0.874 25 H 0.170 0.830 26 H 0.186 0.814 27 H 0.189 0.811 28 H 0.130 0.870 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.513 2.043 -5.776 10.488 hybrid contribution -0.463 -0.051 -0.694 0.836 sum 8.050 1.992 -6.470 10.518 Atomic orbital electron populations 1.81060 1.12603 1.12871 1.10387 1.25641 0.92601 0.91676 0.91834 1.16877 0.83501 1.16773 0.99374 1.20503 0.93464 0.94361 0.95050 1.20081 0.93208 1.11570 1.00889 1.18149 0.88124 0.98459 0.95523 1.20325 0.95413 0.93784 0.93624 1.22515 0.94953 0.98491 0.99173 1.24178 0.93180 0.96855 0.98185 1.72861 1.32503 1.06338 0.98844 1.72904 1.08045 1.11167 1.16315 1.24679 0.91919 0.96926 0.99068 1.21017 0.94057 1.07950 0.99543 1.18320 0.90397 0.90066 0.89763 1.19758 1.03883 1.11832 1.07395 0.88136 1.26432 0.98104 0.96777 0.93244 1.69569 1.36871 1.22733 1.09329 0.86410 0.79576 0.77958 0.82977 1.18538 1.20621 1.15664 0.87227 0.87429 0.82953 0.81394 0.81086 0.87025 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.19 18.54 41.84 0.78 -10.41 15 2 C 0.29 6.35 14.31 -22.47 -0.32 6.03 15 3 C -0.16 -3.25 5.94 -104.14 -0.62 -3.87 15 4 C -0.01 -0.22 9.74 -39.27 -0.38 -0.60 15 5 C -0.24 -3.83 9.40 -39.18 -0.37 -4.20 15 6 C 0.00 -0.02 5.86 -105.03 -0.62 -0.63 15 7 C -0.02 -0.32 5.92 -104.51 -0.62 -0.94 15 8 C -0.12 -1.56 9.57 -38.86 -0.37 -1.94 15 9 C 0.04 0.48 11.30 -17.43 -0.20 0.29 15 10 N -0.26 -4.16 11.49 30.51 0.35 -3.81 15 11 N -0.24 -4.20 11.49 30.76 0.35 -3.85 15 12 C 0.04 0.65 10.72 -17.00 -0.18 0.46 15 13 C -0.21 -4.07 6.49 -38.55 -0.25 -4.32 15 14 C 0.12 2.61 5.33 -104.67 -0.56 2.05 15 15 C -0.40 -9.56 9.08 -37.85 -0.34 -9.91 15 16 H 0.10 2.61 7.58 -52.49 -0.40 2.22 15 17 C 0.08 1.81 5.44 -17.30 -0.09 1.72 15 18 N -0.76 -17.86 13.92 55.56 0.77 -17.08 15 19 Si 0.91 17.58 24.42 -169.99 -4.15 13.43 15 20 H -0.26 -4.64 5.76 56.52 0.33 -4.32 15 21 H -0.28 -5.32 7.11 56.52 0.40 -4.92 15 22 H -0.23 -4.61 6.73 56.52 0.38 -4.23 15 23 H 0.11 1.59 8.06 -52.48 -0.42 1.17 15 24 H 0.11 1.39 6.23 -52.49 -0.33 1.06 15 25 H 0.15 1.49 6.35 -52.49 -0.33 1.16 15 26 H 0.17 1.38 8.06 -52.49 -0.42 0.95 15 27 H 0.17 2.80 5.33 -52.49 -0.28 2.52 15 28 H 0.11 2.15 2.68 -52.49 -0.14 2.01 15 29 H 0.30 6.17 8.29 -40.82 -0.34 5.83 15 LS Contribution 261.13 15.07 3.94 3.94 Total: -1.00 -25.75 261.13 -4.44 -30.19 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -1.56 Total: 3.45 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -4.92 Total: -15.86 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 2.25 Total: -35.15 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -4.15 Total: 13.43 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -25.75 -4.44 -30.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242055437.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.748 kcal (2) G-P(sol) polarization free energy of solvation -25.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds