Wall clock time and date at job start Mon Mar 30 2020 18:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39768 * 120.48987 * 213.27932 * 3 2 1 5 5 N 1.31727 * 120.89245 * 180.02562 * 4 3 2 6 6 C 1.31742 * 122.05906 * 359.97438 * 5 4 3 7 7 C 1.39747 * 120.87914 * 359.97438 * 6 5 4 8 8 C 1.47846 * 120.50194 * 179.97438 * 7 6 5 9 9 C 1.39660 * 120.65218 * 129.97412 * 8 7 6 10 10 C 1.38402 * 118.47578 * 180.02562 * 9 8 7 11 11 C 1.39059 * 119.72250 * 0.02562 * 10 9 8 12 12 N 1.31275 * 121.33748 * 359.97438 * 11 10 9 13 13 C 1.33704 * 121.63676 * 0.02562 * 12 11 10 14 14 C 1.40823 * 119.93745 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00084 * 171.50861 * 14 13 12 16 16 C 1.40152 * 119.99892 * 351.49868 * 14 13 12 17 17 N 1.30692 * 120.00643 * 6.05911 * 16 14 13 18 18 Si 1.86804 * 119.99949 * 186.06108 * 16 14 13 19 19 H 1.48493 * 109.47266 * 94.97810 * 18 16 14 20 20 H 1.48496 * 109.47018 * 214.98299 * 18 16 14 21 21 H 1.48504 * 109.46976 * 334.97698 * 18 16 14 22 22 C 1.39740 * 120.49456 * 33.51892 * 3 2 1 23 23 H 1.07997 * 119.55006 * 0.02562 * 4 3 2 24 24 H 1.08001 * 119.55848 * 179.97438 * 6 5 4 25 25 H 1.07996 * 120.76543 * 0.05213 * 9 8 7 26 26 H 1.07997 * 120.14053 * 180.02562 * 10 9 8 27 27 H 1.08000 * 119.32755 * 180.27730 * 11 10 9 28 28 H 0.97000 * 120.00476 * 180.02562 * 17 16 14 29 29 H 1.08004 * 120.92825 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2767 1.0078 0.6609 5 7 4.5939 1.0165 0.6655 6 6 5.3014 0.0875 0.0556 7 6 4.6749 -0.9575 -0.6289 8 6 5.4771 -1.9953 -1.3110 9 6 5.2163 -3.3508 -1.0986 10 6 5.9954 -4.2841 -1.7599 11 6 7.0091 -3.8574 -2.6109 12 7 7.2463 -2.5808 -2.8039 13 6 6.5270 -1.6336 -2.1929 14 6 6.8128 -0.2745 -2.4256 15 1 6.1511 0.4893 -2.0446 16 6 7.9559 0.0870 -3.1513 17 7 8.6923 -0.8352 -3.7129 18 14 8.4273 1.8871 -3.3160 19 1 9.4159 2.2380 -2.2651 20 1 9.0240 2.1219 -4.6554 21 1 7.2164 2.7322 -3.1586 22 6 3.2775 -1.0029 -0.6649 23 1 2.7370 1.7896 1.1747 24 1 6.3800 0.1342 0.0849 25 1 4.4247 -3.6635 -0.4339 26 1 5.8169 -5.3394 -1.6157 27 1 7.6102 -4.5912 -3.1272 28 1 9.4837 -0.5850 -4.2149 29 1 2.7613 -1.7937 -1.1890 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242274923.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:22:04 Heat of formation + Delta-G solvation = 92.000489 kcal Electronic energy + Delta-G solvation = -16713.863320 eV Core-core repulsion = 13987.766755 eV Total energy + Delta-G solvation = -2726.096565 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.95321 -38.17800 -36.45163 -33.90441 -33.03555 -31.94374 -30.52899 -28.88327 -26.06825 -24.09109 -23.67069 -21.51644 -21.07711 -18.26596 -17.74178 -16.56026 -16.27399 -15.59659 -14.80718 -14.45551 -14.27922 -14.01579 -13.19546 -12.99494 -12.87956 -12.81167 -12.69070 -12.34193 -12.17026 -11.70863 -11.34136 -11.29352 -11.14914 -10.61142 -10.21306 -9.64287 -9.55762 -9.27160 -8.85692 -8.27234 -7.82677 -7.60232 -6.66841 -4.77421 0.89531 1.46147 2.54212 2.71495 2.78122 2.99252 3.03155 3.07784 3.20174 3.78632 3.97899 4.22545 4.52284 4.76295 5.04282 5.32684 5.35382 5.59753 5.83940 5.88927 5.93727 6.15334 6.21113 6.36278 6.52483 6.67219 6.84734 6.94914 7.09323 7.32420 7.48305 7.53274 7.76938 7.98023 8.23693 8.38737 8.64990 9.84215 10.04217 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.018170 B = 0.008153 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.671520 B = 3433.533359 C = 4618.849998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.271 3.729 3 C -0.089 4.089 4 C 0.119 3.881 5 N -0.483 5.483 6 C 0.135 3.865 7 C -0.017 4.017 8 C -0.248 4.248 9 C -0.025 4.025 10 C -0.318 4.318 11 C 0.139 3.861 12 N -0.480 5.480 13 C 0.271 3.729 14 C -0.418 4.418 15 H 0.091 0.909 16 C 0.069 3.931 17 N -0.703 5.703 18 Si 0.905 3.095 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.258 1.258 22 C -0.046 4.046 23 H 0.155 0.845 24 H 0.170 0.830 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.278 0.722 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.438 1.047 3.814 4.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.045 4.045 3 C -0.095 4.095 4 C -0.041 4.041 5 N -0.190 5.190 6 C -0.022 4.022 7 C -0.019 4.019 8 C -0.253 4.253 9 C -0.050 4.050 10 C -0.341 4.341 11 C -0.030 4.030 12 N -0.191 5.191 13 C 0.148 3.852 14 C -0.448 4.448 15 H 0.109 0.891 16 C -0.158 4.158 17 N -0.322 5.322 18 Si 0.728 3.272 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.181 1.181 22 C -0.074 4.074 23 H 0.172 0.828 24 H 0.187 0.813 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.139 0.861 28 H 0.089 0.911 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.887 2.019 3.545 4.998 hybrid contribution -0.476 -0.380 -0.072 0.613 sum -3.363 1.639 3.473 5.105 Atomic orbital electron populations 1.81203 1.12039 1.08384 1.09221 1.25593 0.92460 0.93287 0.93149 1.16932 0.84972 1.00882 1.06698 1.22700 0.90171 0.95630 0.95639 1.67700 1.06885 1.25696 1.18725 1.23457 1.01139 0.88273 0.89356 1.19625 0.91764 0.95697 0.94853 1.19094 1.05642 0.91206 1.09398 1.20892 0.96197 0.92136 0.95763 1.21262 1.05208 0.98057 1.09595 1.22673 0.93207 0.94097 0.93068 1.68787 1.27452 0.98999 1.23851 1.18497 0.86142 0.93287 0.87234 1.19755 1.06060 0.91527 1.27438 0.89128 1.26135 0.96122 0.99644 0.93945 1.70084 1.09891 1.34429 1.17827 0.86322 0.80115 0.82011 0.78765 1.18959 1.19874 1.18110 1.21795 0.93709 0.96398 0.95481 0.82771 0.81280 0.88357 0.88397 0.86096 0.91095 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.95 18.54 41.83 0.78 -6.18 15 2 C 0.27 3.96 15.36 -22.47 -0.35 3.61 15 3 C -0.09 -1.29 5.74 -106.84 -0.61 -1.90 15 4 C 0.12 1.68 10.91 -17.03 -0.19 1.50 15 5 N -0.48 -7.92 10.33 -12.53 -0.13 -8.05 15 6 C 0.14 2.39 8.82 -17.03 -0.15 2.24 15 7 C -0.02 -0.30 4.98 -104.80 -0.52 -0.82 15 8 C -0.25 -5.22 5.55 -104.07 -0.58 -5.80 15 9 C -0.03 -0.50 9.69 -38.99 -0.38 -0.88 15 10 C -0.32 -6.33 10.10 -39.22 -0.40 -6.73 15 11 C 0.14 3.03 11.17 -17.49 -0.20 2.83 15 12 N -0.48 -11.95 7.90 -10.91 -0.09 -12.04 15 13 C 0.27 6.53 6.54 -84.71 -0.55 5.98 15 14 C -0.42 -9.86 7.76 -37.89 -0.29 -10.15 15 15 H 0.09 2.02 5.62 -52.49 -0.30 1.73 15 16 C 0.07 1.59 5.49 -17.32 -0.10 1.50 15 17 N -0.70 -17.03 11.50 55.56 0.64 -16.39 15 18 Si 0.90 17.15 29.57 -169.99 -5.03 12.12 15 19 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 20 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 21 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 22 C -0.05 -0.73 9.44 -38.42 -0.36 -1.10 15 23 H 0.16 1.72 8.06 -52.49 -0.42 1.29 15 24 H 0.17 3.05 7.29 -52.49 -0.38 2.66 15 25 H 0.10 1.67 8.06 -52.49 -0.42 1.24 15 26 H 0.10 1.69 8.06 -52.49 -0.42 1.27 15 27 H 0.12 2.32 8.06 -52.49 -0.42 1.90 15 28 H 0.28 6.09 8.29 -40.82 -0.34 5.75 15 29 H 0.14 2.01 8.06 -52.48 -0.42 1.58 15 LS Contribution 272.21 15.07 4.10 4.10 Total: -1.00 -26.16 272.21 -6.32 -32.48 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -1.93 Total: 3.67 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -4.67 Total: -9.72 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 1.20 Total: -42.66 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.16 -6.32 -32.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242274923.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.482 kcal (2) G-P(sol) polarization free energy of solvation -26.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds