Wall clock time and date at job start Mon Mar 30 2020 18:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 N 1.32744 * 119.85282 * 249.00509 * 3 2 1 5 5 C 1.31541 * 121.77309 * 180.02562 * 4 3 2 6 6 C 1.38740 * 121.26815 * 0.02562 * 5 4 3 7 7 C 1.38226 * 119.55029 * 359.69968 * 6 5 4 8 8 C 1.40097 * 118.36501 * 0.56057 * 7 6 5 9 9 C 1.47593 * 120.62643 * 179.73233 * 8 7 6 10 10 C 1.39427 * 120.79120 * 64.44638 * 9 8 7 11 11 N 1.31638 * 120.65099 * 180.27578 * 10 9 8 12 12 C 1.32229 * 122.51717 * 359.97438 * 11 10 9 13 13 C 1.36490 * 121.53068 * 0.02562 * 12 11 10 14 14 C 1.41126 * 119.11609 * 359.97438 * 13 12 11 15 15 C 1.40863 * 121.11458 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00330 * 204.20812 * 15 14 13 17 17 C 1.40232 * 119.99812 * 24.20569 * 15 14 13 18 18 N 1.30649 * 120.00428 * 14.28017 * 17 15 14 19 19 Si 1.86805 * 119.99877 * 194.27197 * 17 15 14 20 20 H 1.48507 * 109.46944 * 60.00696 * 19 17 15 21 21 H 1.48507 * 109.47081 * 180.02562 * 19 17 15 22 22 H 1.48490 * 109.47446 * 300.00556 * 19 17 15 23 23 H 1.08006 * 119.36679 * 179.97438 * 5 4 3 24 24 H 1.08003 * 120.22557 * 180.02562 * 6 5 4 25 25 H 1.07993 * 120.81887 * 180.32466 * 7 6 5 26 26 H 1.08000 * 119.67906 * 0.25077 * 10 9 8 27 27 H 1.07993 * 119.23529 * 180.02562 * 12 11 10 28 28 H 1.08000 * 120.43963 * 180.02562 * 13 12 11 29 29 H 0.96998 * 120.00703 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2286 0.4134 1.0749 5 6 4.5433 0.4303 1.1158 6 6 5.3029 0.0156 0.0315 7 6 4.6700 -0.4302 -1.1136 8 6 3.2693 -0.4356 -1.1408 9 6 2.5422 -0.8959 -2.3399 10 6 2.6366 -2.2196 -2.7675 11 7 1.9912 -2.6259 -3.8405 12 6 1.2307 -1.8188 -4.5607 13 6 1.0705 -0.5045 -4.2291 14 6 1.7325 0.0021 -3.0904 15 6 1.5963 1.3513 -2.7094 16 1 2.3641 1.8249 -2.1154 17 6 0.4640 2.0797 -3.1014 18 7 -0.5839 1.4561 -3.5703 19 14 0.4537 3.9418 -2.9528 20 1 1.5494 4.5103 -3.7786 21 1 -0.8503 4.4692 -3.4291 22 1 0.6537 4.3263 -1.5326 23 1 5.0409 0.7743 2.0106 24 1 6.3815 0.0361 0.0836 25 1 5.2411 -0.7626 -1.9678 26 1 3.2454 -2.9185 -2.2132 27 1 0.7247 -2.2086 -5.4315 28 1 0.4447 0.1389 -4.8298 29 1 -1.3674 1.9598 -3.8411 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242311804.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:22:41 Heat of formation + Delta-G solvation = 88.478533 kcal Electronic energy + Delta-G solvation = -17234.716418 eV Core-core repulsion = 14508.467129 eV Total energy + Delta-G solvation = -2726.249289 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.93454 -38.22418 -35.61975 -34.33219 -32.97068 -31.72819 -30.37944 -28.80587 -26.23411 -24.14674 -23.53612 -21.63806 -20.66644 -18.80187 -17.75340 -16.19559 -15.83811 -15.60487 -14.68547 -14.53142 -14.51808 -13.79210 -13.16292 -12.83951 -12.70047 -12.40102 -12.39321 -12.08916 -11.86704 -11.79432 -11.54815 -11.33849 -11.12963 -10.48839 -10.07767 -9.64766 -9.48039 -9.35858 -8.72212 -8.16463 -8.00028 -7.68180 -7.01468 -4.81154 1.06867 1.55408 2.53411 2.70272 2.92579 2.94854 3.13744 3.45582 3.53797 3.72522 4.20080 4.46784 4.55086 5.08075 5.19032 5.26928 5.40680 5.48510 5.67786 5.76891 6.01570 6.26157 6.37535 6.50367 6.70087 6.73978 6.90906 6.97764 7.15656 7.31888 7.63086 7.88705 8.13352 8.24189 8.33120 8.50902 8.53505 9.46429 9.85066 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.016138 B = 0.011277 C = 0.008160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.639005 B = 2482.336715 C = 3430.630691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.281 3.719 3 C 0.193 3.807 4 N -0.458 5.458 5 C 0.078 3.922 6 C -0.151 4.151 7 C -0.084 4.084 8 C 0.034 3.966 9 C -0.266 4.266 10 C 0.143 3.857 11 N -0.578 5.578 12 C 0.084 3.916 13 C -0.205 4.205 14 C 0.153 3.847 15 C -0.437 4.437 16 H 0.081 0.919 17 C 0.081 3.919 18 N -0.763 5.763 19 Si 0.907 3.093 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.261 1.261 23 H 0.157 0.843 24 H 0.135 0.865 25 H 0.139 0.861 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.938 1.139 3.288 9.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.071 5.071 2 C -0.036 4.036 3 C 0.056 3.944 4 N -0.167 5.167 5 C -0.082 4.082 6 C -0.171 4.171 7 C -0.110 4.110 8 C 0.029 3.971 9 C -0.272 4.272 10 C -0.017 4.017 11 N -0.292 5.292 12 C -0.062 4.062 13 C -0.227 4.227 14 C 0.145 3.855 15 C -0.466 4.466 16 H 0.099 0.901 17 C -0.143 4.143 18 N -0.386 5.386 19 Si 0.731 3.269 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.185 1.185 23 H 0.174 0.826 24 H 0.153 0.847 25 H 0.157 0.843 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.468 0.575 3.604 7.427 hybrid contribution 0.739 1.578 -0.456 1.801 sum 7.207 2.153 3.148 8.154 Atomic orbital electron populations 1.81071 1.11700 1.06754 1.07525 1.24529 0.91469 0.94381 0.93212 1.16640 0.86506 1.00758 0.90529 1.67373 1.10489 1.12723 1.26147 1.22548 0.88486 0.98666 0.98514 1.22189 1.01242 0.99450 0.94234 1.21796 0.93282 0.97698 0.98178 1.19529 0.92643 0.92470 0.92470 1.19281 1.12988 0.95618 0.99334 1.22044 0.95337 0.91888 0.92418 1.67331 1.13929 1.38724 1.09225 1.21759 0.95599 0.91254 0.97592 1.21993 1.05398 0.96212 0.99119 1.17642 0.86986 0.92109 0.88792 1.19518 1.04049 0.95038 1.28041 0.90123 1.26010 0.94441 1.01578 0.92230 1.69678 1.02673 1.38718 1.27496 0.86335 0.78895 0.81345 0.80363 1.18296 1.19770 1.18515 0.82586 0.84742 0.84318 0.85977 0.86282 0.85172 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -9.69 18.54 41.84 0.78 -8.92 15 2 C 0.28 6.46 13.01 -22.47 -0.29 6.17 15 3 C 0.19 3.90 6.15 -84.57 -0.52 3.38 15 4 N -0.46 -8.12 10.27 -10.76 -0.11 -8.23 15 5 C 0.08 1.05 11.17 -17.49 -0.20 0.86 15 6 C -0.15 -1.84 10.09 -39.40 -0.40 -2.24 15 7 C -0.08 -1.26 9.90 -38.89 -0.39 -1.65 15 8 C 0.03 0.66 4.51 -104.40 -0.47 0.19 15 9 C -0.27 -5.92 4.76 -104.07 -0.50 -6.41 15 10 C 0.14 3.11 10.93 -17.19 -0.19 2.92 15 11 N -0.58 -13.45 10.32 -13.34 -0.14 -13.59 15 12 C 0.08 1.96 11.09 -18.01 -0.20 1.76 15 13 C -0.21 -5.05 8.73 -39.12 -0.34 -5.39 15 14 C 0.15 3.76 5.25 -106.24 -0.56 3.20 15 15 C -0.44 -10.70 7.06 -37.84 -0.27 -10.96 15 16 H 0.08 1.95 7.17 -52.49 -0.38 1.57 15 17 C 0.08 1.92 5.25 -17.31 -0.09 1.83 15 18 N -0.76 -18.72 10.79 55.56 0.60 -18.12 15 19 Si 0.91 18.18 29.58 -169.99 -5.03 13.15 15 20 H -0.26 -5.03 7.11 56.52 0.40 -4.62 15 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 15 23 H 0.16 1.50 8.06 -52.48 -0.42 1.08 15 24 H 0.13 1.12 8.06 -52.48 -0.42 0.70 15 25 H 0.14 1.84 8.06 -52.49 -0.42 1.41 15 26 H 0.12 2.29 8.06 -52.49 -0.42 1.86 15 27 H 0.12 2.45 8.06 -52.49 -0.42 2.03 15 28 H 0.13 3.26 6.12 -52.49 -0.32 2.93 15 29 H 0.29 6.49 8.29 -40.82 -0.34 6.15 15 LS Contribution 270.58 15.07 4.08 4.08 Total: -1.00 -28.54 270.58 -6.17 -34.71 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -1.95 Total: 3.27 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -4.40 Total: -6.35 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 1.13 Total: -48.86 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.54 -6.17 -34.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242311804.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.193 kcal (2) G-P(sol) polarization free energy of solvation -28.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds