Wall clock time and date at job start Mon Mar 30 2020 18:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 N 1.32744 * 119.85282 * 249.00509 * 3 2 1 5 5 C 1.31541 * 121.77309 * 180.02562 * 4 3 2 6 6 C 1.38740 * 121.26815 * 0.02562 * 5 4 3 7 7 C 1.38226 * 119.55029 * 359.69968 * 6 5 4 8 8 C 1.40097 * 118.36501 * 0.56057 * 7 6 5 9 9 C 1.47593 * 120.62643 * 179.73233 * 8 7 6 10 10 C 1.39427 * 120.79120 * 64.44638 * 9 8 7 11 11 N 1.31638 * 120.65099 * 180.27578 * 10 9 8 12 12 C 1.32229 * 122.51717 * 359.97438 * 11 10 9 13 13 C 1.36490 * 121.53068 * 0.02562 * 12 11 10 14 14 C 1.41126 * 119.11609 * 359.97438 * 13 12 11 15 15 C 1.40863 * 121.11458 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00330 * 204.20812 * 15 14 13 17 17 C 1.40232 * 119.99812 * 24.20569 * 15 14 13 18 18 N 1.30649 * 120.00428 * 14.28017 * 17 15 14 19 19 Si 1.86805 * 119.99877 * 194.27197 * 17 15 14 20 20 H 1.48507 * 109.46944 * 60.00696 * 19 17 15 21 21 H 1.48507 * 109.47081 * 180.02562 * 19 17 15 22 22 H 1.48490 * 109.47446 * 300.00556 * 19 17 15 23 23 H 1.08006 * 119.36679 * 179.97438 * 5 4 3 24 24 H 1.08003 * 120.22557 * 180.02562 * 6 5 4 25 25 H 1.07993 * 120.81887 * 180.32466 * 7 6 5 26 26 H 1.08000 * 119.67906 * 0.25077 * 10 9 8 27 27 H 1.07993 * 119.23529 * 180.02562 * 12 11 10 28 28 H 1.08000 * 120.43963 * 180.02562 * 13 12 11 29 29 H 0.96998 * 120.00703 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2286 0.4134 1.0749 5 6 4.5433 0.4303 1.1158 6 6 5.3029 0.0156 0.0315 7 6 4.6700 -0.4302 -1.1136 8 6 3.2693 -0.4356 -1.1408 9 6 2.5422 -0.8959 -2.3399 10 6 2.6366 -2.2196 -2.7675 11 7 1.9912 -2.6259 -3.8405 12 6 1.2307 -1.8188 -4.5607 13 6 1.0705 -0.5045 -4.2291 14 6 1.7325 0.0021 -3.0904 15 6 1.5963 1.3513 -2.7094 16 1 2.3641 1.8249 -2.1154 17 6 0.4640 2.0797 -3.1014 18 7 -0.5839 1.4561 -3.5703 19 14 0.4537 3.9418 -2.9528 20 1 1.5494 4.5103 -3.7786 21 1 -0.8503 4.4692 -3.4291 22 1 0.6537 4.3263 -1.5326 23 1 5.0409 0.7743 2.0106 24 1 6.3815 0.0361 0.0836 25 1 5.2411 -0.7626 -1.9678 26 1 3.2454 -2.9185 -2.2132 27 1 0.7247 -2.2086 -5.4315 28 1 0.4447 0.1389 -4.8298 29 1 -1.3674 1.9598 -3.8411 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242311804.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:22:41 Heat of formation + Delta-G solvation = 71.113450 kcal Electronic energy + Delta-G solvation = -17235.469424 eV Core-core repulsion = 14508.467129 eV Total energy + Delta-G solvation = -2727.002295 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29327 -39.89248 -37.35568 -36.11191 -34.43228 -33.03871 -32.11946 -30.39362 -28.01063 -25.52494 -24.92839 -23.40450 -22.25320 -20.18643 -19.53640 -17.67402 -17.33937 -17.01077 -16.38714 -16.18835 -15.88200 -15.30349 -14.68249 -14.45642 -14.17991 -14.08728 -14.04017 -13.67196 -13.57167 -13.36014 -13.20404 -12.92768 -12.75276 -12.11432 -11.80797 -11.36333 -10.78530 -10.65557 -10.14797 -9.95487 -9.71982 -9.35905 -8.77280 -6.63838 -0.26156 0.30900 0.84436 0.95133 1.27703 1.37759 1.47687 1.77732 2.05535 2.07008 2.69172 2.75849 3.10043 3.59118 3.81105 4.01438 4.11382 4.15545 4.27725 4.43707 4.61035 4.83114 4.89403 4.95483 5.15394 5.23803 5.31596 5.42820 5.51967 5.73774 5.86249 6.09277 6.42721 6.58717 6.70253 6.73371 6.95604 7.67196 8.11026 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.016138 B = 0.011277 C = 0.008160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.639005 B = 2482.336715 C = 3430.630691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.291 3.709 3 C 0.159 3.841 4 N -0.479 5.479 5 C 0.088 3.912 6 C -0.118 4.118 7 C -0.081 4.081 8 C 0.011 3.989 9 C -0.259 4.259 10 C 0.133 3.867 11 N -0.589 5.589 12 C 0.080 3.920 13 C -0.231 4.231 14 C 0.128 3.872 15 C -0.453 4.453 16 H 0.078 0.922 17 C 0.043 3.957 18 N -0.796 5.796 19 Si 0.965 3.035 20 H -0.245 1.245 21 H -0.265 1.265 22 H -0.268 1.268 23 H 0.204 0.796 24 H 0.191 0.809 25 H 0.160 0.840 26 H 0.154 0.846 27 H 0.139 0.861 28 H 0.117 0.883 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.396 1.642 4.526 13.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.025 4.025 3 C 0.024 3.976 4 N -0.189 5.189 5 C -0.073 4.073 6 C -0.137 4.137 7 C -0.106 4.106 8 C 0.005 3.995 9 C -0.265 4.265 10 C -0.025 4.025 11 N -0.304 5.304 12 C -0.067 4.067 13 C -0.253 4.253 14 C 0.120 3.880 15 C -0.482 4.482 16 H 0.096 0.904 17 C -0.177 4.177 18 N -0.420 5.420 19 Si 0.785 3.215 20 H -0.169 1.169 21 H -0.189 1.189 22 H -0.193 1.193 23 H 0.220 0.780 24 H 0.208 0.792 25 H 0.177 0.823 26 H 0.172 0.828 27 H 0.156 0.844 28 H 0.135 0.865 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.929 1.060 4.841 11.097 hybrid contribution -0.110 1.346 -0.714 1.528 sum 9.818 2.406 4.127 10.919 Atomic orbital electron populations 1.81037 1.13272 1.09023 1.09272 1.25327 0.92553 0.92887 0.91764 1.16544 0.85116 1.03770 0.92161 1.67388 1.12761 1.13404 1.25337 1.23489 0.87034 0.96269 1.00468 1.22753 1.03792 0.95346 0.91848 1.22080 0.91253 0.97163 1.00124 1.19493 0.94494 0.94462 0.91083 1.19574 1.11800 0.95407 0.99741 1.22559 0.95296 0.92476 0.92213 1.67394 1.14263 1.38761 1.09980 1.22044 0.95559 0.90911 0.98224 1.22000 1.06557 0.96859 0.99894 1.17993 0.87854 0.92942 0.89223 1.19575 1.04431 0.95424 1.28802 0.90436 1.26754 0.93888 1.05386 0.91670 1.69740 1.03277 1.40185 1.28770 0.85486 0.79556 0.76562 0.79871 1.16894 1.18926 1.19256 0.77956 0.79178 0.82279 0.82835 0.84378 0.86504 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -23.11 18.54 19.00 0.35 -22.76 15 2 C 0.29 13.76 13.01 88.33 1.15 14.91 15 3 C 0.16 6.33 6.15 40.89 0.25 6.58 15 4 N -0.48 -15.86 10.27 -187.96 -1.93 -17.79 15 5 C 0.09 1.92 11.17 84.86 0.95 2.86 15 6 C -0.12 -2.14 10.09 22.39 0.23 -1.91 15 7 C -0.08 -2.10 9.90 22.72 0.22 -1.87 15 8 C 0.01 0.39 4.51 -19.72 -0.09 0.30 15 9 C -0.26 -11.53 4.76 -19.51 -0.09 -11.62 15 10 C 0.13 5.68 10.93 85.01 0.93 6.61 15 11 N -0.59 -27.38 10.32 -196.11 -2.02 -29.40 15 12 C 0.08 3.78 11.09 84.22 0.93 4.72 15 13 C -0.23 -11.79 8.73 22.57 0.20 -11.59 15 14 C 0.13 6.46 5.25 -20.91 -0.11 6.35 15 15 C -0.45 -22.73 7.06 23.40 0.17 -22.56 15 16 H 0.08 3.81 7.17 -2.91 -0.02 3.79 15 17 C 0.04 2.09 5.25 85.35 0.45 2.54 15 18 N -0.80 -40.73 10.79 21.87 0.24 -40.50 15 19 Si 0.96 37.76 29.58 68.60 2.03 39.79 15 20 H -0.25 -8.98 7.11 99.48 0.71 -8.28 15 21 H -0.27 -9.90 7.11 99.48 0.71 -9.20 15 22 H -0.27 -10.68 7.11 99.48 0.71 -9.97 15 23 H 0.20 2.48 8.06 -2.91 -0.02 2.46 15 24 H 0.19 1.49 8.06 -2.91 -0.02 1.47 15 25 H 0.16 3.48 8.06 -2.91 -0.02 3.46 15 26 H 0.15 5.44 8.06 -2.91 -0.02 5.42 15 27 H 0.14 5.78 8.06 -2.91 -0.02 5.76 15 28 H 0.12 6.17 6.12 -2.91 -0.02 6.15 15 29 H 0.29 13.72 8.29 -92.71 -0.77 12.95 15 Total: -1.00 -66.37 270.58 5.04 -61.33 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.20 Total: 14.01 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 5.18 Total: -4.69 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -3.36 Total: -110.44 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Total: -66.37 5.04 -61.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242311804.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.442 kcal (2) G-P(sol) polarization free energy of solvation -66.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds