Wall clock time and date at job start Mon Mar 30 2020 18:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39812 * 120.00061 * 339.22381 * 3 2 1 5 5 C 1.37093 * 120.00163 * 179.97438 * 4 3 2 6 6 C 1.39839 * 119.99972 * 359.97438 * 5 4 3 7 7 C 1.47687 * 120.00329 * 180.02562 * 6 5 4 8 8 N 1.32910 * 120.25337 * 316.65914 * 7 6 5 9 9 C 1.31952 * 120.07734 * 180.27773 * 8 7 6 10 10 C 1.39256 * 120.59260 * 359.73162 * 9 8 7 11 11 N 1.31574 * 120.51101 * 359.97438 * 10 9 8 12 12 C 1.33989 * 119.89915 * 0.02562 * 11 10 9 13 13 C 1.40768 * 120.28839 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00106 * 157.76696 * 13 12 11 15 15 C 1.40208 * 119.99634 * 337.76334 * 13 12 11 16 16 N 1.30658 * 120.00404 * 339.62577 * 15 13 12 17 17 Si 1.86806 * 119.99721 * 159.35054 * 15 13 12 18 18 H 1.48502 * 109.47011 * 270.27825 * 17 15 13 19 19 H 1.48504 * 109.47116 * 30.27435 * 17 15 13 20 20 H 1.48495 * 109.47079 * 150.27614 * 17 15 13 21 21 C 1.39839 * 119.99353 * 0.28383 * 6 5 4 22 22 C 1.37091 * 119.99812 * 359.43313 * 21 6 5 23 23 H 1.07996 * 120.00468 * 359.95757 * 4 3 2 24 24 H 1.08004 * 120.00355 * 180.02562 * 5 4 3 25 25 H 1.07995 * 119.70285 * 179.70435 * 9 8 7 26 26 H 1.08006 * 119.74577 * 179.97438 * 10 9 8 27 27 H 0.96997 * 120.00127 * 353.66250 * 16 15 13 28 28 H 1.08001 * 120.00515 * 179.72029 * 21 6 5 29 29 H 1.07996 * 120.00176 * 180.27476 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2676 -1.1311 0.4295 5 6 4.6385 -1.1307 0.4290 6 6 5.3372 0.0015 -0.0016 7 6 6.8141 0.0018 -0.0027 8 7 7.4846 -0.4988 1.0300 9 6 8.8041 -0.4917 1.0278 10 6 9.5082 0.0324 -0.0533 11 7 8.8681 0.5286 -1.0902 12 6 7.5283 0.5317 -1.1091 13 6 6.8350 1.0610 -2.2139 14 1 5.8171 0.7574 -2.4087 15 6 7.4662 1.9824 -3.0616 16 7 8.5078 2.6498 -2.6412 17 14 6.8224 2.2502 -4.7946 18 1 7.4924 1.3047 -5.7232 19 1 5.3565 2.0139 -4.8202 20 1 7.1064 3.6449 -5.2181 21 6 4.6374 1.1354 -0.4260 22 6 3.2665 1.1327 -0.4310 23 1 2.7281 -2.0056 0.7619 24 1 5.1790 -2.0051 0.7604 25 1 9.3428 -0.8957 1.8721 26 1 10.5882 0.0316 -0.0405 27 1 8.7892 2.5773 -1.7158 28 1 5.1769 2.0115 -0.7544 29 1 2.7260 2.0068 -0.7630 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245494606.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:50 Heat of formation + Delta-G solvation = 64.569401 kcal Electronic energy + Delta-G solvation = -16731.751210 eV Core-core repulsion = 14004.465144 eV Total energy + Delta-G solvation = -2727.286067 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.075 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28077 -39.93703 -37.45939 -36.30523 -34.44096 -33.10095 -32.04958 -30.65223 -27.90553 -25.84926 -24.09688 -23.24034 -22.86361 -20.20046 -19.76702 -17.97470 -17.76673 -16.65914 -16.18580 -15.70564 -15.46369 -15.18811 -15.07881 -14.93359 -14.52311 -14.29467 -13.93581 -13.76840 -13.51513 -13.17115 -12.89321 -12.48824 -11.99589 -11.96284 -11.92712 -11.69790 -11.62522 -11.03729 -10.22165 -9.93599 -9.68626 -9.38455 -8.96342 -6.69878 -0.36147 0.54768 0.58201 0.91811 1.56880 1.64013 1.67634 1.83219 2.01786 2.32266 2.70303 2.91411 2.98414 3.54404 3.63174 4.02543 4.03306 4.04722 4.28994 4.50070 4.53183 4.65266 4.76042 4.88924 5.00977 5.17695 5.36857 5.40356 5.57344 5.68689 5.76041 5.83674 5.93995 6.44669 6.47757 6.56941 7.14767 7.63010 7.99215 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.008298 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.694216 B = 3373.665162 C = 4776.948258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.290 3.710 3 C -0.053 4.053 4 C -0.055 4.055 5 C -0.116 4.116 6 C 0.032 3.968 7 C -0.046 4.046 8 N -0.417 5.417 9 C -0.117 4.117 10 C 0.093 3.907 11 N -0.550 5.550 12 C 0.184 3.816 13 C -0.470 4.470 14 H 0.106 0.894 15 C 0.006 3.994 16 N -0.770 5.770 17 Si 1.114 2.886 18 H -0.271 1.271 19 H -0.246 1.246 20 H -0.271 1.271 21 C -0.110 4.110 22 C -0.059 4.059 23 H 0.157 0.843 24 H 0.128 0.872 25 H 0.168 0.832 26 H 0.167 0.833 27 H 0.292 0.708 28 H 0.127 0.873 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 -2.462 1.170 5.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.024 4.024 3 C -0.057 4.057 4 C -0.075 4.075 5 C -0.135 4.135 6 C 0.029 3.971 7 C -0.192 4.192 8 N -0.129 5.129 9 C -0.278 4.278 10 C -0.076 4.076 11 N -0.269 5.269 12 C 0.061 3.939 13 C -0.500 4.500 14 H 0.124 0.876 15 C -0.218 4.218 16 N -0.391 5.391 17 Si 0.931 3.069 18 H -0.196 1.196 19 H -0.170 1.170 20 H -0.196 1.196 21 C -0.129 4.129 22 C -0.079 4.079 23 H 0.174 0.826 24 H 0.146 0.854 25 H 0.185 0.815 26 H 0.184 0.816 27 H 0.106 0.894 28 H 0.145 0.855 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.077 -1.619 -0.191 6.292 hybrid contribution 1.028 -0.878 1.741 2.204 sum -5.049 -2.497 1.549 5.842 Atomic orbital electron populations 1.81230 1.12915 1.09176 1.10979 1.25687 0.92407 0.92267 0.92067 1.16001 0.83505 0.97281 1.08885 1.21048 0.93103 0.97168 0.96185 1.21060 0.93850 0.97839 1.00766 1.18697 0.89814 0.94122 0.94433 1.20548 0.93814 1.11303 0.93488 1.67785 1.09698 1.10220 1.25240 1.23137 0.90331 1.12011 1.02276 1.23941 1.01552 0.91868 0.90244 1.69024 1.09177 1.21945 1.26710 1.19623 0.88891 0.92106 0.93318 1.20957 1.02175 1.20193 1.06629 0.87579 1.28518 0.92644 0.91513 1.09094 1.70290 1.17988 1.30314 1.20487 0.83038 0.77644 0.77820 0.68403 1.19646 1.16958 1.19571 1.21132 0.93807 0.98146 0.99823 1.21048 0.93044 0.97410 0.96416 0.82566 0.85394 0.81536 0.81627 0.89423 0.85531 0.82901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.00 18.54 19.00 0.35 -13.65 15 2 C 0.29 7.68 15.32 88.33 1.35 9.04 15 3 C -0.05 -1.36 5.74 -21.27 -0.12 -1.48 15 4 C -0.05 -1.39 9.71 22.38 0.22 -1.17 15 5 C -0.12 -3.67 9.62 22.39 0.22 -3.45 15 6 C 0.03 1.20 5.26 -20.01 -0.11 1.10 15 7 C -0.05 -2.07 6.41 42.40 0.27 -1.80 15 8 N -0.42 -18.44 10.29 -182.34 -1.88 -20.32 15 9 C -0.12 -4.73 11.22 84.92 0.95 -3.77 15 10 C 0.09 3.94 11.22 84.98 0.95 4.89 15 11 N -0.55 -27.31 8.02 -187.81 -1.51 -28.82 15 12 C 0.18 9.08 6.06 40.35 0.24 9.32 15 13 C -0.47 -22.05 6.94 23.37 0.16 -21.88 15 14 H 0.11 4.64 6.15 -2.91 -0.02 4.62 15 15 C 0.01 0.26 5.30 85.35 0.45 0.71 15 16 N -0.77 -38.89 13.11 21.87 0.29 -38.61 15 17 Si 1.11 38.50 29.98 68.60 2.06 40.55 15 18 H -0.27 -9.29 7.11 99.48 0.71 -8.58 15 19 H -0.25 -7.47 7.11 99.48 0.71 -6.76 15 20 H -0.27 -9.21 7.11 99.48 0.71 -8.50 15 21 C -0.11 -3.75 7.67 22.39 0.17 -3.58 15 22 C -0.06 -1.59 9.72 22.39 0.22 -1.38 15 23 H 0.16 2.97 8.06 -2.91 -0.02 2.95 15 24 H 0.13 4.00 8.06 -2.91 -0.02 3.97 15 25 H 0.17 5.45 8.06 -2.91 -0.02 5.43 15 26 H 0.17 5.70 8.06 -2.91 -0.02 5.68 15 27 H 0.29 15.58 6.60 -92.71 -0.61 14.97 15 28 H 0.13 4.71 6.75 -2.91 -0.02 4.69 15 29 H 0.15 3.32 8.06 -2.91 -0.02 3.29 15 Total: -1.00 -58.19 271.24 5.65 -52.54 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 1.35 Total: 21.75 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 4.99 Total: -13.45 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -2.74 Total: -101.39 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.06 Total: 40.55 kcal Total: -58.19 5.65 -52.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245494606.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.108 kcal (2) G-P(sol) polarization free energy of solvation -58.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds