Wall clock time and date at job start Mon Mar 30 2020 18:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47374 * 2 1 4 4 H 1.09006 * 109.47478 * 179.24718 * 3 2 1 5 5 C 1.50691 * 109.47446 * 299.24835 * 3 2 1 6 6 H 1.07997 * 120.00437 * 119.99652 * 5 3 2 7 7 C 1.37875 * 120.00001 * 299.99738 * 5 3 2 8 8 N 1.31519 * 120.00370 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00175 * 359.97438 * 7 5 3 10 10 H 1.48507 * 109.46936 * 89.99824 * 9 7 5 11 11 H 1.48492 * 109.47329 * 209.99700 * 9 7 5 12 12 H 1.48504 * 109.46862 * 330.00275 * 9 7 5 13 13 N 1.46908 * 109.46827 * 59.24745 * 3 2 1 14 14 C 1.46903 * 110.99630 * 85.93842 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.54916 * 14 13 3 16 16 N 1.29346 * 124.80060 * 90.02192 * 15 14 13 17 17 C 1.31048 * 117.36326 * 179.97438 * 16 15 14 18 18 C 1.35655 * 114.16665 * 0.02562 * 17 16 15 19 19 C 1.43204 * 126.13133 * 179.97438 * 18 17 16 20 20 N 9.37494 * 87.28790 * 47.53582 * 2 1 3 21 21 S 1.70951 * 124.79002 * 269.71678 * 15 14 13 22 22 H 1.09004 * 109.47259 * 55.55574 * 1 2 3 23 23 H 1.08996 * 109.46950 * 295.55499 * 1 2 3 24 24 H 1.09002 * 109.47191 * 175.56055 * 1 2 3 25 25 H 1.09000 * 109.47459 * 120.00304 * 2 1 3 26 26 H 1.09009 * 109.47092 * 240.00352 * 2 1 3 27 27 H 0.96995 * 120.00247 * 180.02562 * 8 7 5 28 28 H 1.00904 * 110.99736 * 209.88763 * 13 3 2 29 29 H 1.08994 * 109.46864 * 295.54080 * 14 13 3 30 30 H 1.08994 * 109.47486 * 55.54768 * 14 13 3 31 31 H 1.08001 * 122.91695 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4425 0.0135 5 6 1.5530 2.1475 -1.2396 6 1 0.9310 3.0260 -1.1521 7 6 1.9016 1.6710 -2.4856 8 7 1.4762 2.2860 -3.5675 9 14 2.9781 0.1519 -2.6371 10 1 2.1205 -1.0594 -2.6877 11 1 3.7852 0.2392 -3.8805 12 1 3.8842 0.0683 -1.4635 13 7 1.5355 2.1401 1.1903 14 6 2.4170 1.9174 2.3442 15 6 1.9296 2.7336 3.5135 16 7 1.0794 2.3226 4.3974 17 6 0.7572 3.1557 5.3563 18 6 1.3788 4.3590 5.2787 19 6 1.2158 5.4537 6.1875 20 7 1.0864 6.3222 6.9081 21 16 2.4281 4.3310 3.8633 22 1 -0.3634 0.5813 -0.8475 23 1 -0.3633 0.4433 0.9271 24 1 -0.3634 -1.0246 -0.0795 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.7211 1.9506 -4.4440 28 1 1.4190 3.1260 1.0093 29 1 2.4075 0.8603 2.6098 30 1 3.4329 2.2188 2.0889 31 1 0.0570 2.9063 6.1398 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159466.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:24:10 Heat of formation + Delta-G solvation = 80.031275 kcal Electronic energy + Delta-G solvation = -15416.535761 eV Core-core repulsion = 12825.364123 eV Total energy + Delta-G solvation = -2591.171638 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 251.079 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.99505 -37.02106 -36.61574 -33.24351 -31.71419 -30.50074 -27.89928 -26.03863 -23.62189 -23.17890 -21.56295 -19.51902 -18.77951 -17.59009 -16.60960 -15.58246 -15.18303 -15.10499 -14.11603 -14.02197 -13.92638 -13.49204 -13.25573 -13.16906 -13.05588 -12.67758 -12.24613 -11.90208 -11.59896 -11.16298 -10.78781 -10.61885 -10.28685 -10.07966 -9.82069 -9.62206 -9.42165 -9.15216 -9.01243 -8.65565 -7.73479 -6.17583 -4.17977 0.02090 0.75593 1.36288 2.31476 2.62815 3.08061 3.22259 3.30227 3.33289 3.61986 4.00641 4.31290 4.78213 5.00797 5.04246 5.17343 5.48305 5.75415 5.84885 6.08520 6.16173 6.40284 6.62012 6.84622 7.04196 7.12033 7.12460 7.42809 7.48499 7.50996 7.69770 8.08602 8.46572 8.85568 9.43497 10.94908 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.040488 B = 0.004870 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.404327 B = 5748.381487 C = 5992.329737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.114 4.114 3 C 0.187 3.813 4 H 0.006 0.994 5 C -0.518 4.518 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.895 5.895 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.297 1.297 12 H -0.268 1.268 13 N -0.664 5.664 14 C 0.123 3.877 15 C 0.090 3.910 16 N -0.463 5.463 17 C 0.125 3.875 18 C -0.213 4.213 19 C 0.293 3.707 20 N -0.407 5.407 21 S 0.208 5.792 22 H 0.067 0.933 23 H 0.056 0.944 24 H 0.021 0.979 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.265 0.735 28 H 0.342 0.658 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.803 -0.076 13.920 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.079 3.921 4 H 0.023 0.977 5 C -0.556 4.556 6 H 0.098 0.902 7 C -0.127 4.127 8 N -0.532 5.532 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.297 5.297 14 C -0.010 4.010 15 C -0.186 4.186 16 N -0.176 5.176 17 C -0.037 4.037 18 C -0.338 4.338 19 C -0.023 4.023 20 N -0.085 5.085 21 S 0.465 5.535 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.160 0.840 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.713 0.925 14.391 14.674 hybrid contribution 0.653 -0.857 -0.062 1.079 sum 3.366 0.068 14.329 14.719 Atomic orbital electron populations 1.21471 0.95383 0.98467 1.02996 1.21757 0.97611 0.97787 0.98008 1.19650 0.93070 0.91490 0.87924 0.97689 1.20956 1.32917 1.13482 0.88262 0.90217 1.24875 0.95427 0.96721 0.95672 1.69876 1.45072 1.40359 0.97907 0.86874 0.80801 0.83776 0.76911 1.20275 1.22515 1.19319 1.60617 1.47830 1.16888 1.04366 1.20782 0.94437 0.99134 0.86631 1.27767 0.95728 0.95713 0.99387 1.66248 1.13704 1.34460 1.03161 1.22274 0.97972 0.86507 0.96974 1.21459 1.12609 0.96574 1.03142 1.23963 0.93809 0.92010 0.92551 1.81304 1.08414 1.09214 1.09587 1.84243 1.38277 1.13971 1.16988 0.91394 0.92539 0.96029 0.94849 0.93930 0.92466 0.83977 0.87928 0.92963 0.79712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.52 37.16 0.35 -2.17 16 2 C -0.11 -2.33 5.29 -26.74 -0.14 -2.48 16 3 C 0.19 3.96 1.89 -68.87 -0.13 3.83 16 4 H 0.01 0.12 6.77 -51.93 -0.35 -0.23 16 5 C -0.52 -13.22 7.87 -34.45 -0.27 -13.49 16 6 H 0.08 2.22 7.85 -52.49 -0.41 1.80 16 7 C 0.08 2.04 5.45 -17.82 -0.10 1.95 16 8 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 9 Si 0.89 20.76 24.38 -169.99 -4.14 16.62 16 10 H -0.28 -6.39 6.86 56.52 0.39 -6.01 16 11 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -5.95 6.53 56.52 0.37 -5.58 16 13 N -0.66 -11.77 5.61 -109.22 -0.61 -12.39 16 14 C 0.12 1.73 6.11 -4.97 -0.03 1.70 16 15 C 0.09 1.13 6.85 -13.32 -0.09 1.04 16 16 N -0.46 -5.97 10.51 -11.50 -0.12 -6.09 16 17 C 0.13 1.31 11.30 -18.81 -0.21 1.09 16 18 C -0.21 -2.25 6.35 -38.58 -0.25 -2.49 16 19 C 0.29 3.37 15.86 -22.47 -0.36 3.01 16 20 N -0.41 -5.40 18.54 41.84 0.78 -4.62 16 21 S 0.21 2.19 23.15 -107.50 -2.49 -0.30 16 22 H 0.07 1.53 7.09 -51.93 -0.37 1.17 16 23 H 0.06 1.09 7.73 -51.93 -0.40 0.69 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.61 7.62 -51.93 -0.40 0.21 16 26 H 0.04 0.93 3.26 -51.92 -0.17 0.76 16 27 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.34 6.05 8.13 -39.29 -0.32 5.73 16 29 H 0.10 1.45 7.62 -51.93 -0.40 1.05 16 30 H 0.05 0.67 7.94 -51.93 -0.41 0.26 16 31 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 281.68 15.07 4.24 4.24 Total: -1.00 -28.55 281.68 -6.05 -34.59 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -3.25 Total: 1.05 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -1.22 Total: -8.01 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.82 Total: -48.21 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.14 Total: 16.62 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.49 Total: -0.30 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.55 -6.05 -34.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159466.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.626 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds