Wall clock time and date at job start Mon Mar 30 2020 18:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47374 * 2 1 4 4 H 1.09006 * 109.47478 * 179.24718 * 3 2 1 5 5 C 1.50691 * 109.47446 * 299.24835 * 3 2 1 6 6 H 1.07997 * 120.00437 * 119.99652 * 5 3 2 7 7 C 1.37875 * 120.00001 * 299.99738 * 5 3 2 8 8 N 1.31519 * 120.00370 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00175 * 359.97438 * 7 5 3 10 10 H 1.48507 * 109.46936 * 89.99824 * 9 7 5 11 11 H 1.48492 * 109.47329 * 209.99700 * 9 7 5 12 12 H 1.48504 * 109.46862 * 330.00275 * 9 7 5 13 13 N 1.46908 * 109.46827 * 59.24745 * 3 2 1 14 14 C 1.46903 * 110.99630 * 85.93842 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.54916 * 14 13 3 16 16 N 1.29346 * 124.80060 * 90.02192 * 15 14 13 17 17 C 1.31048 * 117.36326 * 179.97438 * 16 15 14 18 18 C 1.35655 * 114.16665 * 0.02562 * 17 16 15 19 19 C 1.43204 * 126.13133 * 179.97438 * 18 17 16 20 20 N 9.37494 * 87.28790 * 47.53582 * 2 1 3 21 21 S 1.70951 * 124.79002 * 269.71678 * 15 14 13 22 22 H 1.09004 * 109.47259 * 55.55574 * 1 2 3 23 23 H 1.08996 * 109.46950 * 295.55499 * 1 2 3 24 24 H 1.09002 * 109.47191 * 175.56055 * 1 2 3 25 25 H 1.09000 * 109.47459 * 120.00304 * 2 1 3 26 26 H 1.09009 * 109.47092 * 240.00352 * 2 1 3 27 27 H 0.96995 * 120.00247 * 180.02562 * 8 7 5 28 28 H 1.00904 * 110.99736 * 209.88763 * 13 3 2 29 29 H 1.08994 * 109.46864 * 295.54080 * 14 13 3 30 30 H 1.08994 * 109.47486 * 55.54768 * 14 13 3 31 31 H 1.08001 * 122.91695 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1300 1.4425 0.0135 5 6 1.5530 2.1475 -1.2396 6 1 0.9310 3.0260 -1.1521 7 6 1.9016 1.6710 -2.4856 8 7 1.4762 2.2860 -3.5675 9 14 2.9781 0.1519 -2.6371 10 1 2.1205 -1.0594 -2.6877 11 1 3.7852 0.2392 -3.8805 12 1 3.8842 0.0683 -1.4635 13 7 1.5355 2.1401 1.1903 14 6 2.4170 1.9174 2.3442 15 6 1.9296 2.7336 3.5135 16 7 1.0794 2.3226 4.3974 17 6 0.7572 3.1557 5.3563 18 6 1.3788 4.3590 5.2787 19 6 1.2158 5.4537 6.1875 20 7 1.0864 6.3222 6.9081 21 16 2.4281 4.3310 3.8633 22 1 -0.3634 0.5813 -0.8475 23 1 -0.3633 0.4433 0.9271 24 1 -0.3634 -1.0246 -0.0795 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.7211 1.9506 -4.4440 28 1 1.4190 3.1260 1.0093 29 1 2.4075 0.8603 2.6098 30 1 3.4329 2.2188 2.0889 31 1 0.0570 2.9063 6.1398 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159466.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:24:09 Heat of formation + Delta-G solvation = 60.163443 kcal Electronic energy + Delta-G solvation = -15417.397295 eV Core-core repulsion = 12825.364123 eV Total energy + Delta-G solvation = -2592.033172 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 251.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90564 -38.40283 -37.73273 -34.80770 -33.44717 -31.63025 -29.31856 -27.50338 -24.93225 -24.69470 -22.50612 -21.19475 -19.76914 -18.55371 -18.39176 -17.24865 -16.20653 -16.09922 -15.57197 -15.34980 -15.27315 -14.72812 -14.54418 -14.46861 -14.21322 -14.14092 -13.64500 -13.24205 -12.85965 -12.53429 -12.44827 -12.36937 -12.03500 -11.76386 -11.18857 -10.90464 -10.74489 -10.64369 -10.50237 -10.01732 -9.14336 -8.23982 -6.26802 -0.87861 -0.11994 0.46859 1.38084 1.40145 1.40764 1.50252 1.71954 2.18481 2.36876 2.70091 3.08719 3.12801 3.58584 3.94181 4.20643 4.39864 4.45454 4.54777 4.72150 4.78236 4.98926 5.01074 5.23520 5.41177 5.42855 5.69620 5.82562 5.98771 6.21344 6.47636 6.60023 6.65656 6.84744 7.38584 8.92115 Molecular weight = 251.08amu Principal moments of inertia in cm(-1) A = 0.040488 B = 0.004870 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.404327 B = 5748.381487 C = 5992.329737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.116 4.116 3 C 0.192 3.808 4 H 0.009 0.991 5 C -0.508 4.508 6 H 0.042 0.958 7 C 0.020 3.980 8 N -0.947 5.947 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.304 1.304 12 H -0.242 1.242 13 N -0.669 5.669 14 C 0.124 3.876 15 C 0.072 3.928 16 N -0.481 5.481 17 C 0.130 3.870 18 C -0.214 4.214 19 C 0.313 3.687 20 N -0.438 5.438 21 S 0.246 5.754 22 H 0.032 0.968 23 H 0.061 0.939 24 H 0.041 0.959 25 H 0.064 0.936 26 H 0.031 0.969 27 H 0.264 0.736 28 H 0.339 0.661 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.702 -1.272 15.842 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.154 4.154 3 C 0.083 3.917 4 H 0.027 0.973 5 C -0.547 4.547 6 H 0.060 0.940 7 C -0.178 4.178 8 N -0.587 5.587 9 Si 0.769 3.231 10 H -0.197 1.197 11 H -0.233 1.233 12 H -0.166 1.166 13 N -0.302 5.302 14 C -0.008 4.008 15 C -0.203 4.203 16 N -0.195 5.195 17 C -0.032 4.032 18 C -0.339 4.339 19 C -0.003 4.003 20 N -0.117 5.117 21 S 0.503 5.497 22 H 0.051 0.949 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.157 0.843 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.622 -0.274 16.348 16.747 hybrid contribution 0.318 -0.384 -0.577 0.763 sum 3.940 -0.657 15.771 16.269 Atomic orbital electron populations 1.21364 0.95372 0.99135 1.01653 1.21757 0.97641 0.97135 0.98877 1.19461 0.93005 0.91909 0.87349 0.97303 1.21226 1.31038 1.12176 0.90246 0.93951 1.25659 0.97037 0.99720 0.95410 1.70029 1.47565 1.42622 0.98509 0.85963 0.79481 0.80267 0.77370 1.19731 1.23273 1.16587 1.60490 1.49009 1.16480 1.04197 1.20754 0.94537 0.99885 0.85637 1.27484 0.96631 0.96771 0.99399 1.66273 1.13965 1.35499 1.03723 1.22653 0.97850 0.85888 0.96850 1.21490 1.12903 0.96434 1.03114 1.23930 0.92868 0.91551 0.91947 1.81333 1.09518 1.10187 1.10626 1.84151 1.37286 1.11989 1.16267 0.94930 0.91965 0.93988 0.91742 0.95057 0.92701 0.84294 0.87555 0.91366 0.77012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.54 9.52 71.98 0.69 -3.86 16 2 C -0.12 -4.47 5.29 30.59 0.16 -4.31 16 3 C 0.19 7.82 1.89 44.16 0.08 7.90 16 4 H 0.01 0.38 6.77 -2.38 -0.02 0.36 16 5 C -0.51 -26.24 7.87 25.60 0.20 -26.04 16 6 H 0.04 2.45 7.85 -2.91 -0.02 2.42 16 7 C 0.02 1.06 5.45 84.65 0.46 1.52 16 8 N -0.95 -56.50 13.96 21.45 0.30 -56.20 16 9 Si 0.94 42.24 24.38 68.60 1.67 43.91 16 10 H -0.27 -11.85 6.86 99.48 0.68 -11.17 16 11 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.24 -9.76 6.53 99.48 0.65 -9.11 16 13 N -0.67 -22.70 5.61 -499.46 -2.80 -25.50 16 14 C 0.12 3.18 6.11 85.56 0.52 3.70 16 15 C 0.07 1.64 6.85 88.48 0.61 2.25 16 16 N -0.48 -11.17 10.51 -190.28 -2.00 -13.17 16 17 C 0.13 2.35 11.30 84.21 0.95 3.31 16 18 C -0.21 -4.01 6.35 22.92 0.15 -3.86 16 19 C 0.31 6.58 15.86 88.33 1.40 7.98 16 20 N -0.44 -11.01 18.54 19.00 0.35 -10.65 16 21 S 0.25 4.61 23.15 -56.49 -1.31 3.30 16 22 H 0.03 1.46 7.09 -2.38 -0.02 1.44 16 23 H 0.06 2.29 7.73 -2.39 -0.02 2.27 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 2.10 7.62 -2.39 -0.02 2.08 16 26 H 0.03 1.28 3.26 -2.38 -0.01 1.27 16 27 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 28 H 0.34 11.78 8.13 -89.69 -0.73 11.05 16 29 H 0.11 2.66 7.62 -2.39 -0.02 2.64 16 30 H 0.07 1.55 7.94 -2.39 -0.02 1.53 16 31 H 0.21 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -61.88 281.68 1.79 -60.08 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.36 Total: 9.63 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 5.22 Total: -11.40 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -4.15 Total: -105.53 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.67 Total: 43.91 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.31 Total: 3.30 kcal Total: -61.88 1.79 -60.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159466.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.247 kcal (2) G-P(sol) polarization free energy of solvation -61.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds