Wall clock time and date at job start Mon Mar 30 2020 18:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86807 * 119.99459 * 2 1 4 4 H 1.48504 * 109.46856 * 269.99910 * 3 2 1 5 5 H 1.48494 * 109.47395 * 30.00071 * 3 2 1 6 6 H 1.48501 * 109.46808 * 150.00446 * 3 2 1 7 7 C 1.40113 * 120.00708 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00727 * 179.97438 * 7 2 1 9 9 C 1.46172 * 119.99669 * 0.02562 * 7 2 1 10 10 O 1.21742 * 120.00392 * 359.97438 * 9 7 2 11 11 N 1.34782 * 120.00268 * 179.97438 * 9 7 2 12 12 C 1.39529 * 119.99904 * 185.27279 * 11 9 7 13 13 C 1.39037 * 120.08656 * 33.39910 * 12 11 9 14 14 C 1.38037 * 119.91977 * 179.97438 * 13 12 11 15 15 C 1.38357 * 120.08148 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.91817 * 179.97438 * 15 14 13 17 17 O 1.42900 * 109.47012 * 359.97438 * 16 15 14 18 18 C 1.38305 * 120.16753 * 0.22833 * 15 14 13 19 19 C 1.50695 * 119.95849 * 179.72202 * 18 15 14 20 20 O 1.42902 * 109.47045 * 180.02562 * 19 18 15 21 21 C 1.38087 * 120.08221 * 359.49330 * 18 15 14 22 22 H 0.97001 * 120.00429 * 359.97438 * 1 2 3 23 23 H 0.97002 * 119.99455 * 5.28038 * 11 9 7 24 24 H 1.08005 * 120.04366 * 359.95281 * 13 12 11 25 25 H 1.07995 * 119.96586 * 179.97438 * 14 13 12 26 26 H 1.08997 * 109.47048 * 240.00420 * 16 15 14 27 27 H 1.08995 * 109.47713 * 119.99857 * 16 15 14 28 28 H 0.96702 * 114.00066 * 180.02562 * 17 16 15 29 29 H 1.08998 * 109.47233 * 300.00298 * 19 18 15 30 30 H 1.08997 * 109.47263 * 60.00403 * 19 18 15 31 31 H 0.96700 * 113.99820 * 180.02562 * 20 19 18 32 32 H 1.07994 * 120.04336 * 180.24645 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2402 1.6179 0.0000 4 1 2.4877 2.0465 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5379 1.4403 0.7000 7 6 2.0071 -1.2133 0.0005 8 1 3.0870 -1.2133 0.0001 9 6 1.2763 -2.4793 0.0005 10 8 0.0589 -2.4794 0.0005 11 7 1.9502 -3.6465 0.0005 12 6 1.2570 -4.8523 -0.1105 13 6 0.0955 -4.9210 -0.8716 14 6 -0.5873 -6.1158 -0.9795 15 6 -0.1174 -7.2441 -0.3311 16 6 -0.8661 -8.5464 -0.4509 17 8 -2.0161 -8.3603 -1.2785 18 6 1.0347 -7.1784 0.4312 19 6 1.5389 -8.4087 1.1405 20 8 2.7336 -8.0897 1.8567 21 6 1.7263 -5.9881 0.5392 22 1 -0.4851 0.8400 0.0004 23 1 2.9172 -3.6482 0.0779 24 1 -0.2724 -4.0405 -1.3774 25 1 -1.4898 -6.1699 -1.5701 26 1 -1.1809 -8.8770 0.5388 27 1 -0.2160 -9.2997 -0.8958 28 1 -2.5470 -9.1595 -1.3997 29 1 0.7803 -8.7619 1.8390 30 1 1.7506 -9.1887 0.4092 31 1 3.1149 -8.8367 2.3380 32 1 2.6281 -5.9386 1.1313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262184936.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:24:13 Heat of formation + Delta-G solvation = -146.924849 kcal Electronic energy + Delta-G solvation = -17819.014644 eV Core-core repulsion = 14742.955828 eV Total energy + Delta-G solvation = -3076.058816 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.07243 -39.39118 -37.66876 -37.25095 -35.30643 -34.55102 -32.46755 -31.39344 -28.64239 -27.22457 -25.99948 -23.08571 -22.80381 -20.90916 -19.62536 -18.49488 -17.85860 -17.73842 -17.51313 -16.56511 -16.26701 -16.06231 -15.52641 -15.26389 -15.11713 -14.68513 -14.53477 -14.43673 -13.61103 -13.35500 -13.16280 -12.82486 -12.74913 -12.72942 -12.15513 -12.03789 -11.81604 -11.42317 -11.03170 -10.99735 -10.58420 -9.96324 -9.57309 -8.67332 -8.39052 -6.97894 0.42871 0.50645 1.38017 1.39913 1.55899 2.19770 2.33752 2.81834 2.94458 3.36130 3.44456 3.54979 3.99352 4.08709 4.19016 4.33691 4.49615 4.52684 4.60918 4.75183 4.82944 4.93524 5.13307 5.22766 5.45771 5.51953 5.67890 5.76955 5.92930 6.14097 6.39221 6.74770 7.02978 7.05106 7.31133 8.32480 8.54840 Molecular weight = 251.10amu Principal moments of inertia in cm(-1) A = 0.032323 B = 0.005133 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.050547 B = 5453.251648 C = 6195.706413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.028 3.972 3 Si 1.005 2.995 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.247 1.247 7 C -0.567 4.567 8 H 0.093 0.907 9 C 0.527 3.473 10 O -0.608 6.608 11 N -0.694 5.694 12 C 0.156 3.844 13 C -0.162 4.162 14 C -0.085 4.085 15 C -0.132 4.132 16 C 0.130 3.870 17 O -0.592 6.592 18 C -0.070 4.070 19 C 0.126 3.874 20 O -0.589 6.589 21 C -0.151 4.151 22 H 0.278 0.722 23 H 0.406 0.594 24 H 0.091 0.909 25 H 0.127 0.873 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.401 0.599 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.402 0.598 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.862 -18.725 1.398 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.188 4.188 3 Si 0.824 3.176 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.170 1.170 7 C -0.602 4.602 8 H 0.111 0.889 9 C 0.334 3.666 10 O -0.493 6.493 11 N -0.338 5.338 12 C 0.059 3.941 13 C -0.184 4.184 14 C -0.103 4.103 15 C -0.133 4.133 16 C 0.053 3.947 17 O -0.401 6.401 18 C -0.071 4.071 19 C 0.049 3.951 20 O -0.398 6.398 21 C -0.172 4.172 22 H 0.088 0.912 23 H 0.241 0.759 24 H 0.109 0.891 25 H 0.145 0.855 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.252 0.748 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.253 0.747 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.973 -17.369 1.121 17.658 hybrid contribution 0.323 0.179 0.127 0.390 sum 3.295 -17.191 1.248 17.548 Atomic orbital electron populations 1.70160 1.09705 1.29443 1.35102 1.27068 0.95583 1.05146 0.90983 0.84912 0.78733 0.74434 0.79567 1.18453 1.19548 1.16998 1.21419 0.95030 0.89547 1.54223 0.88873 1.18807 0.87232 0.83849 0.76716 1.90593 1.15663 1.87236 1.55852 1.43717 1.10130 1.04018 1.75977 1.18269 0.94101 0.87030 0.94731 1.21155 0.97865 0.98178 1.01164 1.20783 0.99104 0.91241 0.99186 1.19663 0.96575 0.96335 1.00734 1.20877 0.86630 0.92175 0.95032 1.86468 1.40435 1.41262 1.71927 1.19580 0.94207 0.95508 0.97834 1.20935 0.87153 0.92183 0.94836 1.86464 1.42037 1.42234 1.69113 1.20742 1.03096 0.91807 1.01528 0.91174 0.75903 0.89081 0.85485 0.90358 0.89684 0.74785 0.90011 0.89299 0.74676 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.53 11.82 21.85 0.26 -50.27 16 2 C 0.03 1.59 5.50 85.33 0.47 2.06 16 3 Si 1.01 41.13 29.56 68.60 2.03 43.16 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 6 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 7 C -0.57 -32.83 9.54 24.79 0.24 -32.59 16 8 H 0.09 4.79 7.85 -2.91 -0.02 4.77 16 9 C 0.53 32.14 7.47 86.30 0.65 32.78 16 10 O -0.61 -42.09 12.70 -4.48 -0.06 -42.14 16 11 N -0.69 -34.92 5.32 -307.53 -1.64 -36.55 16 12 C 0.16 7.38 6.27 38.29 0.24 7.62 16 13 C -0.16 -8.04 8.65 22.41 0.19 -7.84 16 14 C -0.08 -3.43 9.37 22.25 0.21 -3.22 16 15 C -0.13 -4.17 5.88 -19.82 -0.12 -4.29 16 16 C 0.13 2.60 6.42 71.24 0.46 3.06 16 17 O -0.59 -12.91 12.13 -148.98 -1.81 -14.72 16 18 C -0.07 -2.18 5.88 -19.89 -0.12 -2.30 16 19 C 0.13 2.40 6.42 71.23 0.46 2.86 16 20 O -0.59 -11.93 12.13 -148.98 -1.81 -13.74 16 21 C -0.15 -5.80 9.30 22.42 0.21 -5.59 16 22 H 0.28 15.53 8.29 -92.71 -0.77 14.76 16 23 H 0.41 17.42 8.79 -92.71 -0.82 16.60 16 24 H 0.09 5.28 6.42 -2.91 -0.02 5.26 16 25 H 0.13 4.99 7.00 -2.91 -0.02 4.96 16 26 H 0.08 1.20 7.99 -2.39 -0.02 1.18 16 27 H 0.09 1.18 8.01 -2.39 -0.02 1.16 16 28 H 0.40 3.94 9.12 -74.06 -0.68 3.27 16 29 H 0.08 1.19 7.99 -2.39 -0.02 1.17 16 30 H 0.09 1.16 8.01 -2.39 -0.02 1.14 16 31 H 0.40 3.41 9.12 -74.06 -0.68 2.74 16 32 H 0.14 4.93 7.00 -2.91 -0.02 4.91 16 Total: -1.00 -86.71 281.26 -1.11 -87.83 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: -0.97 Total: 33.90 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 2.88 Total: -7.46 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -1.38 Total: -86.82 kcal Atomic # 8 Polarization: -66.93 SS G_CDS: -3.67 Total: -70.60 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -86.71 -1.11 -87.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262184936.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.098 kcal (2) G-P(sol) polarization free energy of solvation -86.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds