Wall clock time and date at job start Mon Mar 30 2020 18:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.47163 * 2 1 4 4 H 1.09003 * 109.47334 * 306.27913 * 3 2 1 5 5 C 1.50696 * 109.47043 * 186.27623 * 3 2 1 6 6 H 1.07998 * 119.99783 * 275.03119 * 5 3 2 7 7 C 1.37876 * 119.99841 * 95.02973 * 5 3 2 8 8 N 1.31519 * 119.99722 * 184.18914 * 7 5 3 9 9 Si 1.86792 * 120.00340 * 4.19253 * 7 5 3 10 10 H 1.48499 * 109.47357 * 84.80844 * 9 7 5 11 11 H 1.48495 * 109.47534 * 204.81208 * 9 7 5 12 12 H 1.48497 * 109.47117 * 324.81265 * 9 7 5 13 13 N 1.46501 * 109.47197 * 66.27303 * 3 2 1 14 14 C 1.37835 * 120.00391 * 275.00446 * 13 3 2 15 15 N 1.32987 * 120.64343 * 354.00565 * 14 13 3 16 16 C 1.31665 * 120.84771 * 179.76490 * 15 14 13 17 17 N 1.31981 * 122.24252 * 0.53458 * 16 15 14 18 18 C 1.32183 * 121.20102 * 359.73626 * 17 16 15 19 19 C 1.39828 * 118.99565 * 0.02562 * 18 17 16 20 20 C 1.47294 * 121.00155 * 180.02562 * 19 18 17 21 21 O 1.21521 * 120.00001 * 185.87452 * 20 19 18 22 22 O 1.34770 * 120.00184 * 5.87370 * 20 19 18 23 23 H 1.09000 * 109.46720 * 300.00065 * 1 2 3 24 24 H 1.09004 * 109.46631 * 60.00188 * 1 2 3 25 25 H 1.08995 * 109.47346 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46720 * 239.99935 * 2 1 3 27 27 H 1.08996 * 109.46521 * 120.00095 * 2 1 3 28 28 H 0.97006 * 119.99710 * 179.97438 * 8 7 5 29 29 H 0.97003 * 119.99428 * 94.99627 * 13 3 2 30 30 H 1.07995 * 118.87553 * 180.24643 * 16 15 14 31 31 H 1.08007 * 120.50238 * 179.97438 * 18 17 16 32 32 H 0.96693 * 117.00159 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5879 1.9878 -0.8285 5 6 3.5390 1.4453 -0.1553 6 1 4.1720 1.3304 0.7122 7 6 4.1023 1.5945 -1.4049 8 7 5.4068 1.5146 -1.5519 9 14 3.0128 1.9103 -2.8889 10 1 2.7299 3.3643 -2.9949 11 1 3.7059 1.4500 -4.1189 12 1 1.7363 1.1678 -2.7328 13 7 1.6789 2.0882 1.2645 14 6 0.4368 2.6669 1.4127 15 7 -0.3988 2.7520 0.3816 16 6 -1.5880 3.2998 0.5198 17 7 -2.0053 3.7964 1.6692 18 6 -1.2418 3.7615 2.7477 19 6 0.0297 3.1865 2.6597 20 6 0.9168 3.1237 3.8338 21 8 2.0561 2.7182 3.7136 22 8 0.4651 3.5158 5.0415 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8031 1.6192 -2.4312 29 1 2.3140 2.1083 1.9975 30 1 -2.2426 3.3486 -0.3379 31 1 -1.5945 4.1716 3.6825 32 1 1.0839 3.4566 5.7821 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604980708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:21:50 Heat of formation + Delta-G solvation = -41.092717 kcal Electronic energy + Delta-G solvation = -18690.261884 eV Core-core repulsion = 15651.085044 eV Total energy + Delta-G solvation = -3039.176839 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 251.106 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.98378 -39.49848 -37.03240 -35.89810 -33.39446 -32.63480 -32.03058 -30.32501 -27.46102 -25.34942 -23.53691 -22.58167 -21.94229 -19.97976 -18.35647 -18.12509 -17.05892 -16.69896 -16.61510 -15.73890 -15.13303 -14.63408 -14.33805 -13.93252 -13.69209 -13.27543 -13.07229 -12.83158 -12.09094 -11.99245 -11.58677 -11.43205 -11.27882 -10.97419 -10.82635 -10.52884 -10.24371 -9.97414 -9.90167 -9.71520 -9.27060 -8.87377 -8.74563 -7.59981 -6.28227 -4.33248 0.73675 1.72405 2.68190 3.07720 3.20979 3.29192 3.33689 3.73365 4.15069 4.26401 4.39164 4.55991 4.99347 5.10134 5.20394 5.63712 5.69508 5.90806 5.95224 6.06854 6.37240 6.51950 6.54842 6.63159 6.82214 6.87458 7.08422 7.21025 7.37114 7.67993 7.90620 8.17869 8.35872 8.63850 8.76872 9.31285 10.83388 Molecular weight = 251.11amu Principal moments of inertia in cm(-1) A = 0.023482 B = 0.008095 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.102685 B = 3458.205179 C = 4041.274780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.229 3.771 4 H 0.062 0.938 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.082 3.918 8 N -0.885 5.885 9 Si 0.875 3.125 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.257 1.257 13 N -0.640 5.640 14 C 0.484 3.516 15 N -0.572 5.572 16 C 0.363 3.637 17 N -0.592 5.592 18 C 0.245 3.755 19 C -0.338 4.338 20 C 0.545 3.455 21 O -0.521 6.521 22 O -0.515 6.515 23 H 0.038 0.962 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.269 0.731 29 H 0.423 0.577 30 H 0.194 0.806 31 H 0.170 0.830 32 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.603 2.796 7.669 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.127 3.873 4 H 0.079 0.921 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.123 4.123 8 N -0.521 5.521 9 Si 0.701 3.299 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.181 1.181 13 N -0.269 5.269 14 C 0.234 3.766 15 N -0.297 5.297 16 C 0.073 3.927 17 N -0.313 5.313 18 C 0.078 3.922 19 C -0.352 4.352 20 C 0.391 3.609 21 O -0.411 6.411 22 O -0.326 6.326 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.270 0.730 30 H 0.210 0.790 31 H 0.187 0.813 32 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -12.718 2.584 6.207 14.386 hybrid contribution 0.819 0.105 0.636 1.042 sum -11.899 2.689 6.843 13.987 Atomic orbital electron populations 1.21882 0.97607 0.99195 1.01358 1.22082 0.93560 0.99170 1.01646 1.19456 0.96161 0.89415 0.82300 0.92065 1.20989 0.88526 1.51997 0.95698 0.90238 1.24951 0.94978 0.93555 0.98789 1.69887 1.10076 1.47841 1.24252 0.86874 0.81341 0.79640 0.82021 1.19814 1.21135 1.18096 1.46686 1.10177 1.50386 1.19699 1.18672 0.87225 0.84045 0.86693 1.68370 1.05975 1.24482 1.30846 1.24874 0.89067 0.84098 0.94648 1.68463 1.37153 1.25415 1.00318 1.23211 0.86594 0.85494 0.96904 1.19887 1.00185 1.22289 0.92845 1.20333 0.85141 0.73091 0.82345 1.90695 1.20193 1.45316 1.84854 1.84526 1.49163 1.80112 1.18840 0.94280 0.92451 0.94647 0.91455 0.92960 0.92123 0.72980 0.78974 0.81274 0.72950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.56 37.16 0.32 -2.31 16 2 C -0.13 -2.66 5.58 -26.73 -0.15 -2.81 16 3 C 0.23 5.35 1.89 -69.08 -0.13 5.22 16 4 H 0.06 1.49 4.66 -51.93 -0.24 1.24 16 5 C -0.53 -14.59 9.05 -34.44 -0.31 -14.90 16 6 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 7 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 8 N -0.88 -26.12 13.96 55.43 0.77 -25.35 16 9 Si 0.88 20.94 26.97 -169.99 -4.58 16.36 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.26 -5.86 6.85 56.52 0.39 -5.47 16 13 N -0.64 -13.76 5.04 -54.69 -0.28 -14.03 16 14 C 0.48 9.20 5.89 -154.90 -0.91 8.29 16 15 N -0.57 -10.29 7.11 -13.59 -0.10 -10.39 16 16 C 0.36 5.32 12.26 -92.10 -1.13 4.19 16 17 N -0.59 -8.49 10.41 -14.29 -0.15 -8.64 16 18 C 0.24 3.35 10.89 -16.81 -0.18 3.17 16 19 C -0.34 -5.46 5.92 -104.54 -0.62 -6.08 16 20 C 0.55 8.31 8.26 34.41 0.28 8.60 16 21 O -0.52 -9.57 14.61 -19.28 -0.28 -9.85 16 22 O -0.52 -5.47 12.79 -40.68 -0.52 -5.99 16 23 H 0.04 0.72 5.70 -51.93 -0.30 0.42 16 24 H 0.06 1.05 7.87 -51.93 -0.41 0.65 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.42 9.34 5.29 -40.82 -0.22 9.12 16 30 H 0.19 2.10 8.06 -52.49 -0.42 1.67 16 31 H 0.17 1.76 7.72 -52.48 -0.41 1.36 16 32 H 0.41 2.54 9.11 45.56 0.42 2.95 16 LS Contribution 274.93 15.07 4.14 4.14 Total: -1.00 -31.50 274.93 -6.34 -37.84 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -2.42 Total: 10.35 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -2.93 Total: 5.57 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.25 Total: -58.41 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.80 Total: -15.85 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.58 Total: 16.36 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.50 -6.34 -37.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.254 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds