Wall clock time and date at job start Mon Mar 30 2020 18:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.47267 * 2 1 4 4 H 1.08996 * 109.46717 * 56.92685 * 3 2 1 5 5 C 1.50695 * 109.46883 * 176.92501 * 3 2 1 6 6 H 1.08004 * 120.00164 * 95.23350 * 5 3 2 7 7 C 1.37875 * 120.00571 * 275.22903 * 5 3 2 8 8 N 1.31519 * 119.99318 * 355.19995 * 7 5 3 9 9 Si 1.86796 * 120.00600 * 175.20297 * 7 5 3 10 10 H 1.48498 * 109.47208 * 89.99880 * 9 7 5 11 11 H 1.48503 * 109.46837 * 330.00093 * 9 7 5 12 12 H 1.48502 * 109.47267 * 209.99835 * 9 7 5 13 13 N 1.46901 * 109.47049 * 296.92614 * 3 2 1 14 14 C 1.46843 * 110.99860 * 174.99916 * 13 3 2 15 15 C 1.53031 * 109.52143 * 185.83999 * 14 13 3 16 16 C 1.53114 * 109.28124 * 300.81991 * 15 14 13 17 17 F 1.39905 * 109.52705 * 177.56224 * 16 15 14 18 18 F 1.39901 * 109.52338 * 297.75325 * 16 15 14 19 19 C 1.53121 * 109.16149 * 57.65507 * 16 15 14 20 20 H 1.08996 * 109.49897 * 62.32532 * 19 16 15 21 21 F 1.39892 * 109.50494 * 182.40831 * 19 16 15 22 22 C 1.46842 * 110.99716 * 299.21100 * 13 3 2 23 23 H 1.09006 * 109.46923 * 299.99970 * 1 2 3 24 24 H 1.08998 * 109.46914 * 59.99658 * 1 2 3 25 25 H 1.08993 * 109.47386 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47219 * 240.00272 * 2 1 3 27 27 H 1.08994 * 109.47493 * 119.99895 * 2 1 3 28 28 H 0.96995 * 120.00483 * 5.22079 * 8 7 5 29 29 H 1.09004 * 109.46401 * 305.85718 * 14 13 3 30 30 H 1.08998 * 109.46249 * 65.82505 * 14 13 3 31 31 H 1.09000 * 109.50734 * 60.76422 * 15 14 13 32 32 H 1.09005 * 109.50416 * 180.87933 * 15 14 13 33 33 H 1.09006 * 109.46346 * 294.17013 * 22 13 3 34 34 H 1.09000 * 109.46902 * 54.14916 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6324 1.9720 0.8611 5 6 3.5450 1.4432 0.0762 6 1 4.1316 1.5120 -0.8281 7 6 4.1735 1.3559 1.3003 8 7 3.4624 1.3673 2.4067 9 14 6.0345 1.2215 1.3875 10 1 6.6262 2.5816 1.4595 11 1 6.5379 0.5262 0.1756 12 1 6.4191 0.4498 2.5966 13 7 1.6119 2.1133 -1.2349 14 6 1.9817 3.5343 -1.2172 15 6 1.3952 4.2306 -2.4472 16 6 1.9344 3.5594 -3.7134 17 9 1.3586 4.1559 -4.8403 18 9 3.3248 3.7061 -3.7643 19 6 1.5777 2.0707 -3.6838 20 1 0.4938 1.9562 -3.6841 21 9 2.1144 1.4393 -4.8109 22 6 2.1590 1.4369 -2.4178 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.4936 1.3607 2.3607 29 1 1.5886 4.0007 -0.3138 30 1 3.0677 3.6272 -1.2306 31 1 0.3083 4.1502 -2.4274 32 1 1.6829 5.2820 -2.4420 33 1 3.2441 1.5396 -2.4257 34 1 1.8945 0.3799 -2.3867 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166360.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:21:23 Heat of formation + Delta-G solvation = -159.738957 kcal Electronic energy + Delta-G solvation = -20170.765751 eV Core-core repulsion = 16688.127628 eV Total energy + Delta-G solvation = -3482.638123 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.08673 -47.35288 -46.86454 -38.35077 -34.47889 -32.00132 -30.46985 -30.22219 -26.19943 -23.98559 -23.31692 -22.51555 -20.36906 -19.55382 -17.55634 -17.27319 -16.66272 -16.34545 -15.70465 -15.62577 -14.32227 -13.90760 -13.81472 -13.74315 -13.64556 -13.50297 -13.19852 -13.18742 -12.74748 -12.44237 -12.10932 -11.63077 -11.52119 -11.34929 -11.02905 -10.82558 -10.70759 -10.46984 -10.21783 -10.07644 -9.95469 -9.74679 -9.13803 -8.48226 -7.37335 -6.47101 -4.24819 3.36093 3.39709 3.54826 3.62073 4.06616 4.23433 4.34982 4.42150 4.64098 4.93193 5.06093 5.24072 5.43183 5.55844 5.70938 5.75083 5.89369 6.05254 6.06759 6.18360 6.27228 6.36740 6.54691 6.67778 6.73899 6.90038 7.15110 7.18792 7.64011 7.84467 8.06009 8.34913 8.70238 9.48900 10.88264 Molecular weight = 251.12amu Principal moments of inertia in cm(-1) A = 0.023222 B = 0.008429 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.458258 B = 3321.045584 C = 3800.908916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C 0.198 3.802 4 H 0.049 0.951 5 C -0.628 4.628 6 H 0.053 0.947 7 C 0.031 3.969 8 N -0.905 5.905 9 Si 1.063 2.937 10 H -0.288 1.288 11 H -0.288 1.288 12 H -0.284 1.284 13 N -0.527 5.527 14 C 0.061 3.939 15 C -0.152 4.152 16 C 0.265 3.735 17 F -0.201 7.201 18 F -0.190 7.190 19 C 0.061 3.939 20 H 0.113 0.887 21 F -0.200 7.200 22 C 0.033 3.967 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.031 0.969 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.271 0.729 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.352 2.691 -8.318 10.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C 0.092 3.908 4 H 0.067 0.933 5 C -0.667 4.667 6 H 0.071 0.929 7 C -0.175 4.175 8 N -0.541 5.541 9 Si 0.892 3.108 10 H -0.214 1.214 11 H -0.214 1.214 12 H -0.209 1.209 13 N -0.252 5.252 14 C -0.068 4.068 15 C -0.191 4.191 16 C 0.229 3.771 17 F -0.182 7.182 18 F -0.171 7.171 19 C 0.024 3.976 20 H 0.131 0.869 21 F -0.180 7.180 22 C -0.096 4.096 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.559 2.602 -7.325 9.012 hybrid contribution -0.220 0.136 -1.299 1.324 sum -4.779 2.737 -8.624 10.233 Atomic orbital electron populations 1.21754 0.97823 0.99178 1.01311 1.21739 0.93287 0.99179 1.00727 1.19481 0.94253 0.90456 0.86592 0.93330 1.22465 0.91993 1.56656 0.95606 0.92865 1.25707 1.06765 0.92991 0.92087 1.70789 1.08526 1.45587 1.29151 0.83621 0.74599 0.76965 0.75661 1.21423 1.21425 1.20933 1.62459 1.58107 1.01341 1.03286 1.21855 0.99920 0.89527 0.95470 1.22660 1.03256 1.00781 0.92369 1.21854 0.75676 0.94242 0.85359 1.93001 1.84332 1.85662 1.55230 1.93026 1.30603 1.96668 1.96781 1.22708 1.00935 0.88755 0.85249 0.86912 1.92835 1.88489 1.83451 1.53269 1.22502 0.99521 0.99689 0.87886 0.93815 0.92673 0.94958 0.93507 0.92479 0.91712 0.89826 0.92494 0.88295 0.89069 0.91886 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.78 37.15 0.36 -2.12 16 2 C -0.11 -2.28 5.17 -26.73 -0.14 -2.42 16 3 C 0.20 4.39 1.49 -68.86 -0.10 4.29 16 4 H 0.05 1.19 6.61 -51.93 -0.34 0.85 16 5 C -0.63 -15.91 6.91 -34.44 -0.24 -16.14 16 6 H 0.05 1.39 6.07 -52.48 -0.32 1.07 16 7 C 0.03 0.82 5.45 -17.82 -0.10 0.72 16 8 N -0.91 -25.39 13.63 55.43 0.76 -24.64 16 9 Si 1.06 24.27 29.91 -169.99 -5.08 19.18 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.53 -9.91 4.01 -228.08 -0.91 -10.83 16 14 C 0.06 1.08 5.01 -3.84 -0.02 1.06 16 15 C -0.15 -2.18 5.62 -26.66 -0.15 -2.33 16 16 C 0.27 4.27 1.87 -26.61 -0.05 4.22 16 17 F -0.20 -3.21 17.07 2.25 0.04 -3.17 16 18 F -0.19 -3.49 16.18 2.25 0.04 -3.46 16 19 C 0.06 0.98 3.58 -26.65 -0.10 0.88 16 20 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 21 F -0.20 -3.47 17.04 2.25 0.04 -3.43 16 22 C 0.03 0.60 4.43 -3.83 -0.02 0.59 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.91 7.69 -51.93 -0.40 0.51 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.95 6.14 -51.93 -0.32 0.63 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.27 7.51 6.66 -40.82 -0.27 7.24 16 29 H 0.08 1.46 8.08 -51.93 -0.42 1.04 16 30 H 0.06 1.15 7.18 -51.93 -0.37 0.78 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.32 6.10 -51.93 -0.32 1.00 16 34 H 0.09 1.71 5.97 -51.93 -0.31 1.40 16 LS Contribution 277.83 15.07 4.19 4.19 Total: -1.00 -27.12 277.83 -5.89 -33.01 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.40 Total: 0.38 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.54 Total: -11.25 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.16 Total: -35.46 kcal Atomic # 9 Polarization: -10.16 SS G_CDS: 0.11 Total: -10.05 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.08 Total: 19.18 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.12 -5.89 -33.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166360.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.725 kcal (2) G-P(sol) polarization free energy of solvation -27.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds