Wall clock time and date at job start Mon Mar 30 2020 18:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99880 * 2 1 4 4 H 1.48499 * 109.47174 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47207 * 299.99807 * 3 2 1 6 6 H 1.48500 * 109.47019 * 59.99836 * 3 2 1 7 7 C 1.37874 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99836 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00255 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47011 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99974 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99782 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00040 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47269 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.47127 * 184.99793 * 15 14 13 17 17 C 1.52998 * 117.49473 * 128.74735 * 16 15 14 18 18 C 1.52999 * 117.49564 * 60.08975 * 16 15 14 19 19 C 1.52999 * 109.46991 * 65.00478 * 15 14 13 20 20 C 1.53005 * 117.49421 * 248.74300 * 19 15 14 21 21 C 1.53005 * 117.50089 * 180.09060 * 19 15 14 22 22 H 0.97000 * 120.00387 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46894 * 59.99611 * 9 7 2 24 24 H 1.09001 * 109.46755 * 300.00236 * 9 7 2 25 25 H 1.09002 * 109.47196 * 60.00096 * 10 9 7 26 26 H 1.08993 * 109.47322 * 299.99972 * 10 9 7 27 27 H 0.97002 * 120.00454 * 0.02562 * 13 11 10 28 28 H 1.09002 * 109.46913 * 59.99937 * 14 13 11 29 29 H 1.09001 * 109.46815 * 300.00514 * 14 13 11 30 30 H 1.08993 * 109.47194 * 304.99635 * 15 14 13 31 31 H 1.08996 * 115.55247 * 274.41876 * 16 15 14 32 32 H 1.08992 * 117.50074 * 0.02562 * 17 16 15 33 33 H 1.09001 * 117.49625 * 145.02619 * 17 16 15 34 34 H 1.09006 * 117.49693 * 214.97957 * 18 16 15 35 35 H 1.08998 * 117.50050 * 359.97172 * 18 16 15 36 36 H 1.08995 * 115.55503 * 34.40793 * 19 15 14 37 37 H 1.08999 * 117.50011 * 0.02562 * 20 19 15 38 38 H 1.09004 * 117.49761 * 145.01847 * 20 19 15 39 39 H 1.09000 * 117.50058 * 214.98050 * 21 19 15 40 40 H 1.08999 * 117.49282 * 359.96831 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0011 13 7 2.1657 -6.1343 0.0008 14 6 1.4333 -7.4031 0.0008 15 6 2.4275 -8.5659 -0.0004 16 6 1.6666 -9.8874 -0.1260 17 6 2.1195 -10.8626 -1.2145 18 6 0.8069 -10.0915 -1.3750 19 6 3.2232 -8.5579 1.3065 20 6 4.7102 -8.2066 1.2260 21 6 4.2780 -9.6496 1.4981 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8719 -3.6043 -0.8894 27 1 3.1357 -6.1343 0.0004 28 1 0.8063 -7.4607 -0.8890 29 1 0.8069 -7.4609 0.8910 30 1 3.1110 -8.4588 -0.8426 31 1 1.3031 -10.3114 0.8100 32 1 2.9597 -10.5629 -1.8408 33 1 2.0535 -11.9281 -0.9947 34 1 -0.1221 -10.6502 -1.2608 35 1 0.7830 -9.2843 -2.1070 36 1 2.6750 -8.2273 2.1886 37 1 5.1214 -7.9808 0.2422 38 1 5.1403 -7.6452 2.0555 39 1 4.4239 -10.0371 2.5064 40 1 4.4047 -10.3737 0.6934 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581045607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:24:06 Heat of formation + Delta-G solvation = -13.750558 kcal Electronic energy + Delta-G solvation = -18033.467051 eV Core-core repulsion = 15234.849294 eV Total energy + Delta-G solvation = -2798.617757 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.64032 -38.48296 -36.38990 -34.31264 -33.39939 -31.12747 -29.81334 -25.91265 -24.04667 -22.65259 -22.52820 -21.63693 -21.28318 -20.14311 -19.35356 -16.84586 -16.26307 -15.95621 -15.56815 -15.08566 -14.91280 -14.48403 -14.32638 -14.12804 -13.16332 -13.02413 -12.24998 -12.17445 -12.08216 -11.86654 -11.76205 -11.67756 -11.36075 -11.11198 -10.92112 -10.61840 -10.55812 -10.48602 -10.10762 -10.03084 -9.91835 -9.62247 -9.12050 -8.94191 -8.67286 -8.29389 -5.93410 -3.97590 3.33885 3.34670 3.40878 3.43999 3.47145 3.53759 3.77577 4.26060 4.49575 4.56718 4.62928 4.76759 4.79793 4.89392 5.09326 5.14226 5.36758 5.41216 5.41507 5.45555 5.46900 5.64284 5.68470 5.70825 5.80179 5.89133 5.93032 5.97108 6.06843 6.20589 6.28569 6.30214 6.82873 6.94929 7.78062 7.90618 7.98891 8.10845 8.42390 8.86998 9.11637 9.65805 11.17612 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.035304 B = 0.003731 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.924944 B = 7502.775373 C = 8060.079654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.537 6.537 13 N -0.742 5.742 14 C 0.129 3.871 15 C -0.037 4.037 16 C -0.139 4.139 17 C -0.179 4.179 18 C -0.180 4.180 19 C -0.145 4.145 20 C -0.181 4.181 21 C -0.176 4.176 22 H 0.260 0.740 23 H 0.023 0.977 24 H 0.023 0.977 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.396 0.604 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.582 -22.182 0.276 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.296 3.704 12 O -0.412 6.412 13 N -0.396 5.396 14 C 0.005 3.995 15 C -0.056 4.056 16 C -0.157 4.157 17 C -0.216 4.216 18 C -0.217 4.217 19 C -0.163 4.163 20 C -0.218 4.218 21 C -0.213 4.213 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.230 0.770 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.520 -22.053 0.275 23.301 hybrid contribution 0.919 0.846 0.046 1.250 sum 8.439 -21.207 0.321 22.827 Atomic orbital electron populations 1.70009 1.06049 1.26421 1.50378 1.25030 0.94823 0.99222 0.95370 0.86541 0.80009 0.83880 0.77561 1.19757 1.21033 1.21041 1.21272 0.92959 0.91040 1.51123 0.92574 1.18901 0.93205 0.89410 0.98605 1.21852 1.00680 0.92096 1.02371 1.21534 0.88637 0.85695 0.74502 1.90664 1.14504 1.87705 1.48358 1.46181 1.10018 1.05548 1.77856 1.21232 0.93961 0.82086 1.02260 1.20573 0.95900 0.92756 0.96347 1.22133 1.02942 0.96503 0.94168 1.23009 0.98553 0.97528 1.02484 1.23003 0.94897 1.03289 1.00537 1.22296 0.90922 1.04062 0.98991 1.23063 0.97023 0.98558 1.03186 1.22900 1.03836 0.91968 1.02591 0.93036 0.95848 0.95831 0.90347 0.90374 0.77009 0.91695 0.91782 0.90546 0.87491 0.88970 0.88954 0.88709 0.88531 0.87578 0.88787 0.88670 0.89087 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.29 55.43 0.74 -27.01 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.53 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.70 5.64 -27.88 -0.16 -2.86 16 11 C 0.51 10.05 7.83 -10.99 -0.09 9.97 16 12 O -0.54 -13.04 15.98 5.56 0.09 -12.95 16 13 N -0.74 -10.70 5.35 -60.29 -0.32 -11.02 16 14 C 0.13 1.64 4.96 -4.04 -0.02 1.62 16 15 C -0.04 -0.34 2.20 -90.62 -0.20 -0.54 16 16 C -0.14 -1.17 4.81 -90.62 -0.44 -1.60 16 17 C -0.18 -1.33 10.18 -26.69 -0.27 -1.60 16 18 C -0.18 -1.53 9.68 -26.69 -0.26 -1.78 16 19 C -0.14 -1.27 4.67 -90.61 -0.42 -1.70 16 20 C -0.18 -1.45 10.08 -26.69 -0.27 -1.72 16 21 C -0.18 -1.33 9.88 -26.69 -0.26 -1.60 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.40 4.65 8.14 -40.82 -0.33 4.32 16 28 H 0.06 0.90 7.13 -51.93 -0.37 0.53 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.69 7.66 -51.93 -0.40 0.30 16 31 H 0.11 0.89 8.11 -51.93 -0.42 0.47 16 32 H 0.09 0.66 8.05 -51.93 -0.42 0.24 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.88 7.59 -51.93 -0.39 0.49 16 36 H 0.11 1.04 8.11 -51.93 -0.42 0.62 16 37 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 334.45 15.07 5.04 5.04 Total: -1.00 -33.53 334.45 -9.33 -42.86 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.94 Total: 1.03 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -2.91 Total: -14.79 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.41 Total: -38.03 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.53 -9.33 -42.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581045607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.113 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds