Wall clock time and date at job start Mon Mar 30 2020 18:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99562 * 2 1 4 4 H 1.48502 * 109.47282 * 269.99747 * 3 2 1 5 5 H 1.48500 * 109.47640 * 30.00138 * 3 2 1 6 6 H 1.48505 * 109.47306 * 150.00014 * 3 2 1 7 7 C 1.37878 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99560 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00234 * 359.97438 * 7 2 1 10 10 O 1.42904 * 113.25507 * 312.95374 * 9 7 2 11 11 C 1.53513 * 114.17100 * 180.02562 * 9 7 2 12 12 N 1.47481 * 87.93174 * 220.32980 * 11 9 7 13 13 C 1.46903 * 111.00165 * 138.70269 * 12 11 9 14 14 C 1.53001 * 109.46956 * 170.00094 * 13 12 11 15 15 H 1.09002 * 109.61803 * 55.00062 * 14 13 12 16 16 C 1.53304 * 109.76731 * 294.54640 * 14 13 12 17 17 C 1.52871 * 108.58245 * 165.73789 * 16 14 13 18 18 C 1.52710 * 110.15025 * 54.52550 * 17 16 14 19 19 H 1.09005 * 115.39186 * 128.78736 * 18 17 16 20 20 C 1.53656 * 116.02911 * 269.79419 * 18 17 16 21 21 C 1.52065 * 120.52506 * 338.52609 * 18 17 16 22 22 H 1.09002 * 115.93211 * 150.00823 * 21 18 17 23 23 C 1.52076 * 120.01877 * 5.28948 * 21 18 17 24 24 C 1.47486 * 87.83755 * 27.00834 * 12 11 9 25 25 H 0.96997 * 120.00139 * 0.02562 * 1 2 3 26 26 H 0.96691 * 114.00215 * 47.05040 * 10 9 7 27 27 H 1.09003 * 113.47701 * 105.56342 * 11 9 7 28 28 H 1.08994 * 113.47502 * 335.09206 * 11 9 7 29 29 H 1.09000 * 109.46801 * 49.99934 * 13 12 11 30 30 H 1.08997 * 109.46909 * 289.99522 * 13 12 11 31 31 H 1.08996 * 109.61766 * 285.47005 * 16 14 13 32 32 H 1.09009 * 109.61553 * 46.01307 * 16 14 13 33 33 H 1.08997 * 109.36051 * 294.31737 * 17 16 14 34 34 H 1.09002 * 109.24476 * 174.65548 * 17 16 14 35 35 H 1.08998 * 117.53936 * 4.31277 * 20 18 17 36 36 H 1.09005 * 117.54003 * 219.06417 * 20 18 17 37 37 H 1.09001 * 109.26840 * 218.03488 * 23 21 18 38 38 H 1.09002 * 109.24054 * 98.55015 * 23 21 18 39 39 H 1.08998 * 113.47458 * 87.75609 * 24 12 11 40 40 H 1.09001 * 113.47384 * 218.22281 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 0.1947 -2.5407 0.9608 11 6 2.1499 -3.7437 -0.0005 12 7 1.2078 -4.3583 -0.9544 13 6 1.9262 -5.0862 -2.0090 14 6 0.9312 -5.9107 -2.8281 15 1 0.1439 -5.2605 -3.2097 16 6 0.3145 -7.0035 -1.9475 17 6 -0.9112 -7.5718 -2.6629 18 6 -0.5302 -8.0447 -4.0640 19 1 -0.8365 -9.0606 -4.3139 20 6 -0.6551 -7.0013 -5.1851 21 6 0.7149 -7.5044 -4.7497 22 1 1.2061 -8.1815 -5.4485 23 6 1.6568 -6.5780 -3.9964 24 6 0.8556 -2.9965 -1.3979 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3698 -1.7557 0.9590 27 1 2.1866 -4.2528 0.9626 28 1 3.1392 -3.5649 -0.4216 29 1 2.6619 -5.7504 -1.5554 30 1 2.4323 -4.3747 -2.6614 31 1 1.0438 -7.7970 -1.7845 32 1 0.0144 -6.5764 -0.9905 33 1 -1.6762 -6.7991 -2.7380 34 1 -1.3025 -8.4135 -2.0915 35 1 -0.9332 -5.9866 -4.9004 36 1 -1.0334 -7.3405 -6.1495 37 1 2.0261 -5.8102 -4.6763 38 1 2.4989 -7.1551 -3.6144 39 1 1.4996 -2.6183 -2.1919 40 1 -0.2045 -2.8725 -1.6191 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262010607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:27:22 Heat of formation + Delta-G solvation = -5.672218 kcal Electronic energy + Delta-G solvation = -19063.233729 eV Core-core repulsion = 16264.966276 eV Total energy + Delta-G solvation = -2798.267453 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.79719 -38.76461 -34.74428 -33.13978 -32.02360 -30.93832 -28.29896 -25.86378 -24.85198 -23.97001 -22.79153 -21.25949 -20.31405 -18.58185 -18.31535 -17.22135 -16.01938 -15.10257 -14.96858 -14.62652 -14.14978 -14.10248 -13.65737 -13.37183 -13.30860 -12.76995 -12.13720 -11.97733 -11.85669 -11.83273 -11.48235 -11.31643 -11.08357 -10.89111 -10.68917 -10.52011 -10.47866 -10.26223 -9.90261 -9.86516 -9.65500 -9.53414 -9.20759 -8.63267 -8.13535 -7.82904 -6.25813 -4.35414 3.19498 3.27174 3.30663 3.76830 4.25644 4.67283 4.71162 4.85064 4.93104 4.99047 5.16443 5.22506 5.45696 5.46410 5.64197 5.74614 5.76155 5.78404 5.81933 5.94718 6.02818 6.03565 6.11966 6.18982 6.23548 6.29003 6.33540 6.40501 6.42013 6.49817 6.69364 6.73685 6.78077 7.08755 7.24393 7.39138 7.78091 7.99039 8.09347 8.66756 9.34698 9.70951 10.80151 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.037330 B = 0.004817 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.878971 B = 5811.896699 C = 5919.646444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.247 3.753 10 O -0.570 6.570 11 C 0.003 3.997 12 N -0.468 5.468 13 C 0.023 3.977 14 C -0.076 4.076 15 H 0.069 0.931 16 C -0.106 4.106 17 C -0.089 4.089 18 C -0.146 4.146 19 H 0.095 0.905 20 C -0.189 4.189 21 C -0.136 4.136 22 H 0.093 0.907 23 C -0.084 4.084 24 C -0.020 4.020 25 H 0.271 0.729 26 H 0.389 0.611 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 -11.645 -7.774 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.205 3.795 10 O -0.382 6.382 11 C -0.126 4.126 12 N -0.190 5.190 13 C -0.106 4.106 14 C -0.095 4.095 15 H 0.087 0.913 16 C -0.144 4.144 17 C -0.126 4.126 18 C -0.164 4.164 19 H 0.113 0.887 20 C -0.226 4.226 21 C -0.154 4.154 22 H 0.111 0.889 23 C -0.122 4.122 24 C -0.149 4.149 25 H 0.081 0.919 26 H 0.245 0.755 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.319 -12.588 -7.426 14.618 hybrid contribution 0.862 1.847 -0.840 2.205 sum 1.182 -10.741 -8.266 13.605 Atomic orbital electron populations 1.69298 1.06118 1.27791 1.50743 1.25060 0.94970 0.99654 0.93433 0.86409 0.79862 0.82405 0.78253 1.20459 1.20889 1.19657 1.21604 0.93666 0.90658 1.51337 0.91640 1.19356 0.85095 0.90598 0.84448 1.86026 1.45295 1.48051 1.58875 1.24037 0.95296 0.96546 0.96693 1.68832 1.26780 1.13566 1.09823 1.22673 0.95741 0.97582 0.94619 1.21046 0.97774 0.96294 0.94364 0.91257 1.21520 0.96356 0.97015 0.99493 1.21056 0.98388 1.00169 0.93020 1.22253 1.02065 0.97697 0.94398 0.88656 1.23152 1.00842 0.99688 0.98871 1.21778 0.90027 1.01821 1.01777 0.88919 1.20893 0.97195 0.97511 0.96614 1.24716 1.00655 0.87901 1.01651 0.91851 0.75494 0.91236 0.92058 0.92093 0.94426 0.92745 0.89963 0.91679 0.92054 0.88621 0.89446 0.91884 0.91703 0.92497 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.25 11.02 55.43 0.61 -23.64 16 2 C 0.07 1.87 5.39 -17.82 -0.10 1.77 16 3 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.53 -14.34 8.68 -34.44 -0.30 -14.64 16 8 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.25 6.31 1.57 -91.24 -0.14 6.17 16 10 O -0.57 -15.66 13.54 -35.23 -0.48 -16.13 16 11 C 0.00 0.07 7.09 -7.53 -0.05 0.02 16 12 N -0.47 -9.74 5.64 -244.59 -1.38 -11.12 16 13 C 0.02 0.39 4.22 -3.82 -0.02 0.38 16 14 C -0.08 -1.13 2.14 -90.53 -0.19 -1.32 16 15 H 0.07 1.15 7.11 -51.93 -0.37 0.78 16 16 C -0.11 -1.52 5.25 -26.64 -0.14 -1.66 16 17 C -0.09 -1.12 5.83 -26.95 -0.16 -1.28 16 18 C -0.15 -1.68 6.19 -90.90 -0.56 -2.24 16 19 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.19 -2.16 9.66 -26.74 -0.26 -2.41 16 21 C -0.14 -1.56 6.00 -91.92 -0.55 -2.11 16 22 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 23 C -0.08 -1.05 5.22 -27.27 -0.14 -1.20 16 24 C -0.02 -0.46 7.13 -7.53 -0.05 -0.52 16 25 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.39 10.85 6.33 45.56 0.29 11.14 16 27 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.06 1.28 7.87 -51.93 -0.41 0.87 16 29 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 30 H 0.04 0.65 7.30 -51.93 -0.38 0.27 16 31 H 0.05 0.74 8.04 -51.93 -0.42 0.32 16 32 H 0.08 1.37 7.48 -51.92 -0.39 0.98 16 33 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 1.20 7.26 -51.93 -0.38 0.83 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.31 7.37 -51.93 -0.38 0.93 16 40 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 311.62 15.07 4.70 4.70 Total: -1.00 -27.09 311.62 -10.44 -37.53 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -6.20 Total: 12.33 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -2.67 Total: -19.05 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: -0.77 Total: -34.76 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.48 Total: -16.13 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.09 -10.44 -37.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262010607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.853 kcal (2) G-P(sol) polarization free energy of solvation -27.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds