Wall clock time and date at job start Mon Mar 30 2020 18:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34238 * 116.99815 * 2 1 4 4 O 1.20827 * 120.00100 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99913 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47310 * 179.97438 * 5 3 2 7 7 C 1.36875 * 120.00101 * 270.00293 * 6 5 3 8 8 H 1.08000 * 120.00097 * 126.14942 * 7 6 5 9 9 C 1.39014 * 119.99334 * 306.14901 * 7 6 5 10 10 N 1.31392 * 119.99578 * 174.44135 * 9 7 6 11 11 Si 1.86795 * 120.00417 * 354.43990 * 9 7 6 12 12 H 1.48492 * 109.47412 * 94.98016 * 11 9 7 13 13 H 1.48503 * 109.47306 * 214.98131 * 11 9 7 14 14 H 1.48508 * 109.46935 * 334.98116 * 11 9 7 15 15 C 1.34777 * 119.99702 * 89.99410 * 6 5 3 16 16 O 1.21732 * 120.00475 * 3.58155 * 15 6 5 17 17 C 1.46556 * 119.99680 * 183.58198 * 15 6 5 18 18 C 1.37990 * 126.24055 * 172.48599 * 17 15 6 19 19 C 1.39809 * 107.08410 * 179.72545 * 18 17 15 20 20 C 1.35481 * 107.87823 * 0.41188 * 19 18 17 21 21 N 1.35592 * 108.88413 * 359.58008 * 20 19 18 22 22 H 0.96993 * 125.68347 * 180.23820 * 21 20 19 23 23 H 1.09004 * 109.47028 * 300.00203 * 1 2 3 24 24 H 1.08994 * 109.47577 * 59.99722 * 1 2 3 25 25 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47287 * 59.99767 * 5 3 2 27 27 H 1.09000 * 109.46822 * 299.99742 * 5 3 2 28 28 H 0.97003 * 120.00209 * 180.02562 * 10 9 7 29 29 H 1.08006 * 126.45832 * 359.96967 * 18 17 15 30 30 H 1.07997 * 126.05725 * 180.25528 * 19 18 17 31 31 H 1.08000 * 125.55827 * 179.84313 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9817 2.6799 -0.0011 7 6 4.1752 3.3359 -1.1867 8 1 3.6630 4.2671 -1.3785 9 6 5.0312 2.8034 -2.1439 10 7 5.1339 3.3735 -3.3232 11 14 6.0356 1.2776 -1.7535 12 1 5.3157 0.0733 -2.2397 13 1 7.3568 1.3693 -2.4252 14 1 6.2327 1.1771 -0.2850 15 6 4.1731 3.3263 1.1659 16 8 4.0644 2.7260 2.2193 17 6 4.5120 4.7522 1.1667 18 6 4.5927 5.5709 2.2745 19 6 4.9488 6.8440 1.8193 20 6 5.0677 6.7854 0.4710 21 7 4.8084 5.5188 0.0622 22 1 4.8280 5.2053 -0.8554 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 3.9557 0.7810 -0.8908 27 1 3.9563 0.7807 0.8892 28 1 5.7309 3.0018 -3.9913 29 1 4.4180 5.2817 3.3004 30 1 5.0995 7.7195 2.4334 31 1 5.3308 7.6117 -0.1727 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120522607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:59 Heat of formation + Delta-G solvation = -53.963619 kcal Electronic energy + Delta-G solvation = -18939.105693 eV Core-core repulsion = 15801.652067 eV Total energy + Delta-G solvation = -3137.453626 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.54148 -39.87851 -38.19755 -35.97627 -35.06199 -32.35579 -30.33625 -29.38755 -28.05846 -26.48586 -25.15077 -21.80197 -20.68216 -19.69563 -19.17940 -18.60326 -17.33917 -16.68485 -16.04224 -15.58577 -15.33332 -15.15612 -14.26481 -13.96086 -13.25604 -13.22961 -13.05758 -12.72718 -12.43064 -12.35307 -11.92823 -11.84464 -11.65756 -11.56092 -11.31053 -10.74859 -10.41392 -10.31234 -9.94305 -9.53033 -9.07191 -8.20799 -8.03504 -7.41474 -6.79205 -4.69156 2.35396 2.76763 2.87108 3.03892 3.06856 3.10065 3.48588 3.83687 4.08059 4.25341 4.35183 4.71117 5.31268 5.38005 5.39740 5.58251 5.73552 5.76521 5.79108 5.97551 6.07259 6.28015 6.77604 6.81251 6.84046 7.04743 7.53233 7.72297 7.76491 7.81699 8.30973 8.44880 8.61230 8.97529 9.33575 10.25866 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.017455 B = 0.010386 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.710752 B = 2695.362806 C = 3629.815089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.448 3.552 4 O -0.489 6.489 5 C 0.111 3.889 6 N -0.459 5.459 7 C -0.363 4.363 8 H 0.105 0.895 9 C 0.073 3.927 10 N -0.853 5.853 11 Si 0.876 3.124 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.252 1.252 15 C 0.578 3.422 16 O -0.576 6.576 17 C -0.011 4.011 18 C -0.145 4.145 19 C -0.224 4.224 20 C -0.009 4.009 21 N -0.508 5.508 22 H 0.439 0.561 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.283 0.717 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.510 -2.010 2.549 3.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.288 3.712 4 O -0.374 6.374 5 C -0.014 4.014 6 N -0.181 5.181 7 C -0.491 4.491 8 H 0.122 0.878 9 C -0.138 4.138 10 N -0.486 5.486 11 Si 0.701 3.299 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.175 1.175 15 C 0.370 3.630 16 O -0.458 6.458 17 C -0.127 4.127 18 C -0.172 4.172 19 C -0.249 4.249 20 C -0.148 4.148 21 N -0.112 5.112 22 H 0.291 0.709 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.094 0.906 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.719 -2.119 2.634 3.792 hybrid contribution 0.148 -0.722 -0.666 0.993 sum -1.571 -2.840 1.968 3.796 Atomic orbital electron populations 1.23144 0.77460 1.02892 1.02286 1.86523 1.22728 1.34434 1.84897 1.24758 0.92876 0.81228 0.72293 1.90626 1.66618 1.36277 1.43909 1.21324 0.86630 0.88600 1.04810 1.43148 1.60332 1.08486 1.06158 1.18965 1.27636 1.09298 0.93183 0.87828 1.25661 0.95279 0.98209 0.94680 1.69629 1.35225 1.39978 1.03762 0.86800 0.80235 0.82136 0.80707 1.19096 1.20365 1.17519 1.17403 0.77184 0.85210 0.83212 1.90691 1.56014 1.67489 1.31643 1.20181 1.13439 0.91868 0.87258 1.21110 1.06112 0.92746 0.97185 1.20663 1.12380 0.97886 0.93951 1.22017 1.08126 0.88465 0.96153 1.43799 1.48656 1.07489 1.11284 0.70906 0.92281 0.92211 0.88658 0.87948 0.86741 0.90648 0.84697 0.85240 0.82423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.66 10.57 -39.28 -0.42 -7.07 16 3 C 0.45 9.66 8.02 36.00 0.29 9.95 16 4 O -0.49 -11.93 16.18 -18.75 -0.30 -12.23 16 5 C 0.11 2.42 4.60 -5.20 -0.02 2.39 16 6 N -0.46 -11.07 1.43 -117.63 -0.17 -11.24 16 7 C -0.36 -8.98 7.04 -15.01 -0.11 -9.08 16 8 H 0.10 2.73 6.34 -52.49 -0.33 2.40 16 9 C 0.07 1.76 5.46 -17.45 -0.10 1.66 16 10 N -0.85 -21.33 13.96 55.50 0.77 -20.55 16 11 Si 0.88 18.65 24.90 -169.99 -4.23 14.42 16 12 H -0.27 -5.36 6.98 56.52 0.39 -4.97 16 13 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 14 H -0.25 -5.43 6.93 56.52 0.39 -5.04 16 15 C 0.58 14.32 7.60 -12.91 -0.10 14.22 16 16 O -0.58 -14.93 16.45 5.16 0.08 -14.84 16 17 C -0.01 -0.25 6.77 -81.98 -0.55 -0.81 16 18 C -0.15 -2.97 10.66 -39.08 -0.42 -3.39 16 19 C -0.22 -3.96 10.81 -39.98 -0.43 -4.39 16 20 C -0.01 -0.16 11.89 -16.87 -0.20 -0.36 16 21 N -0.51 -10.64 5.36 -9.37 -0.05 -10.69 16 22 H 0.44 9.57 5.16 -40.82 -0.21 9.36 16 23 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 24 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.10 2.12 4.30 -51.93 -0.22 1.90 16 27 H 0.11 2.32 7.37 -51.93 -0.38 1.94 16 28 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 29 H 0.14 2.61 8.06 -52.48 -0.42 2.19 16 30 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 31 H 0.16 2.19 8.06 -52.49 -0.42 1.76 16 LS Contribution 273.34 15.07 4.12 4.12 Total: -1.00 -29.60 273.34 -3.60 -33.20 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -2.84 Total: 13.13 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -0.57 Total: 11.76 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.56 Total: -42.48 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.63 Total: -34.15 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.23 Total: 14.42 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.60 -3.60 -33.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120522607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.766 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds