Wall clock time and date at job start Mon Mar 30 2020 18:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34238 * 116.99815 * 2 1 4 4 O 1.20827 * 120.00100 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99913 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47310 * 179.97438 * 5 3 2 7 7 C 1.36875 * 120.00101 * 270.00293 * 6 5 3 8 8 H 1.08000 * 120.00097 * 126.14942 * 7 6 5 9 9 C 1.39014 * 119.99334 * 306.14901 * 7 6 5 10 10 N 1.31392 * 119.99578 * 174.44135 * 9 7 6 11 11 Si 1.86795 * 120.00417 * 354.43990 * 9 7 6 12 12 H 1.48492 * 109.47412 * 94.98016 * 11 9 7 13 13 H 1.48503 * 109.47306 * 214.98131 * 11 9 7 14 14 H 1.48508 * 109.46935 * 334.98116 * 11 9 7 15 15 C 1.34777 * 119.99702 * 89.99410 * 6 5 3 16 16 O 1.21732 * 120.00475 * 3.58155 * 15 6 5 17 17 C 1.46556 * 119.99680 * 183.58198 * 15 6 5 18 18 C 1.37990 * 126.24055 * 172.48599 * 17 15 6 19 19 C 1.39809 * 107.08410 * 179.72545 * 18 17 15 20 20 C 1.35481 * 107.87823 * 0.41188 * 19 18 17 21 21 N 1.35592 * 108.88413 * 359.58008 * 20 19 18 22 22 H 0.96993 * 125.68347 * 180.23820 * 21 20 19 23 23 H 1.09004 * 109.47028 * 300.00203 * 1 2 3 24 24 H 1.08994 * 109.47577 * 59.99722 * 1 2 3 25 25 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47287 * 59.99767 * 5 3 2 27 27 H 1.09000 * 109.46822 * 299.99742 * 5 3 2 28 28 H 0.97003 * 120.00209 * 180.02562 * 10 9 7 29 29 H 1.08006 * 126.45832 * 359.96967 * 18 17 15 30 30 H 1.07997 * 126.05725 * 180.25528 * 19 18 17 31 31 H 1.08000 * 125.55827 * 179.84313 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9817 2.6799 -0.0011 7 6 4.1752 3.3359 -1.1867 8 1 3.6630 4.2671 -1.3785 9 6 5.0312 2.8034 -2.1439 10 7 5.1339 3.3735 -3.3232 11 14 6.0356 1.2776 -1.7535 12 1 5.3157 0.0733 -2.2397 13 1 7.3568 1.3693 -2.4252 14 1 6.2327 1.1771 -0.2850 15 6 4.1731 3.3263 1.1659 16 8 4.0644 2.7260 2.2193 17 6 4.5120 4.7522 1.1667 18 6 4.5927 5.5709 2.2745 19 6 4.9488 6.8440 1.8193 20 6 5.0677 6.7854 0.4710 21 7 4.8084 5.5188 0.0622 22 1 4.8280 5.2053 -0.8554 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 3.9557 0.7810 -0.8908 27 1 3.9563 0.7807 0.8892 28 1 5.7309 3.0018 -3.9913 29 1 4.4180 5.2817 3.3004 30 1 5.0995 7.7195 2.4334 31 1 5.3308 7.6117 -0.1727 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120522607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:59 Heat of formation + Delta-G solvation = -73.099158 kcal Electronic energy + Delta-G solvation = -18939.935472 eV Core-core repulsion = 15801.652067 eV Total energy + Delta-G solvation = -3138.283405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.17616 -41.48263 -39.93231 -37.63029 -36.88807 -34.22217 -31.89807 -31.02181 -29.54583 -27.91221 -26.97191 -23.45147 -22.30697 -21.25754 -20.83152 -20.33854 -19.00022 -18.35631 -17.60012 -17.27030 -17.00514 -16.89182 -15.99140 -15.67223 -14.87264 -14.72584 -14.63820 -14.28479 -14.11675 -14.06062 -13.51997 -13.37198 -13.12486 -13.00993 -13.00487 -12.45895 -12.04715 -11.84993 -11.68436 -11.35773 -10.91435 -9.93546 -9.70375 -8.97898 -8.64731 -6.59127 0.66673 1.07870 1.18371 1.31891 1.40446 1.55946 2.03441 2.08250 2.41086 2.48069 2.67032 2.94733 3.82382 3.89726 4.07829 4.26611 4.28895 4.30505 4.46033 4.61594 4.62892 4.75019 5.18924 5.26003 5.30956 5.39503 5.82607 5.90959 6.02969 6.24798 6.67034 6.73065 6.87760 7.11665 7.48974 8.42810 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.017455 B = 0.010386 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.710752 B = 2695.362806 C = 3629.815089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.452 3.548 4 O -0.526 6.526 5 C 0.102 3.898 6 N -0.464 5.464 7 C -0.364 4.364 8 H 0.080 0.920 9 C 0.045 3.955 10 N -0.880 5.880 11 Si 0.919 3.081 12 H -0.244 1.244 13 H -0.273 1.273 14 H -0.259 1.259 15 C 0.565 3.435 16 O -0.602 6.602 17 C -0.062 4.062 18 C -0.146 4.146 19 C -0.220 4.220 20 C 0.005 3.995 21 N -0.519 5.519 22 H 0.433 0.567 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.142 0.858 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.289 0.711 29 H 0.139 0.861 30 H 0.168 0.832 31 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 -2.152 2.611 3.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.294 3.706 4 O -0.414 6.414 5 C -0.022 4.022 6 N -0.186 5.186 7 C -0.492 4.492 8 H 0.097 0.903 9 C -0.164 4.164 10 N -0.514 5.514 11 Si 0.741 3.259 12 H -0.168 1.168 13 H -0.198 1.198 14 H -0.183 1.183 15 C 0.359 3.641 16 O -0.487 6.487 17 C -0.177 4.177 18 C -0.174 4.174 19 C -0.243 4.243 20 C -0.134 4.134 21 N -0.122 5.122 22 H 0.283 0.717 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.160 0.840 26 H 0.131 0.869 27 H 0.144 0.856 28 H 0.099 0.901 29 H 0.157 0.843 30 H 0.186 0.814 31 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.407 -2.288 2.687 3.799 hybrid contribution -0.028 -0.609 -0.667 0.904 sum -1.435 -2.897 2.019 3.812 Atomic orbital electron populations 1.23571 0.74808 1.05953 1.02207 1.86493 1.25179 1.32194 1.84019 1.24629 0.92860 0.81648 0.71470 1.90609 1.67338 1.37648 1.45837 1.21457 0.87290 0.87617 1.05828 1.43186 1.60390 1.09265 1.05758 1.18759 1.27811 1.09101 0.93481 0.90324 1.26108 0.95665 1.00347 0.94260 1.69678 1.35997 1.41247 1.04466 0.86137 0.79422 0.80233 0.80062 1.16799 1.19807 1.18300 1.17826 0.76939 0.86253 0.83099 1.90639 1.57520 1.68306 1.32197 1.20235 1.16968 0.91714 0.88763 1.21425 1.05167 0.93826 0.96936 1.21084 1.11146 0.97839 0.94260 1.22817 1.05503 0.88002 0.97035 1.43767 1.49257 1.08579 1.10562 0.71715 0.92398 0.92375 0.83991 0.86882 0.85603 0.90068 0.84308 0.81434 0.78303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.36 -12.61 10.57 -51.49 -0.54 -13.15 16 3 C 0.45 19.46 8.02 71.23 0.57 20.03 16 4 O -0.53 -26.09 16.18 21.96 0.36 -25.74 16 5 C 0.10 4.44 4.60 85.63 0.39 4.83 16 6 N -0.46 -22.76 1.43 -644.27 -0.92 -23.69 16 7 C -0.36 -18.34 7.04 84.09 0.59 -17.75 16 8 H 0.08 4.31 6.34 -2.91 -0.02 4.30 16 9 C 0.04 2.17 5.46 84.94 0.46 2.63 16 10 N -0.88 -44.04 13.96 21.68 0.30 -43.74 16 11 Si 0.92 37.54 24.90 68.60 1.71 39.25 16 12 H -0.24 -9.07 6.98 99.48 0.69 -8.37 16 13 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 14 H -0.26 -10.87 6.93 99.48 0.69 -10.18 16 15 C 0.57 28.67 7.60 86.41 0.66 29.33 16 16 O -0.60 -31.91 16.45 -4.45 -0.07 -31.98 16 17 C -0.06 -2.85 6.77 40.34 0.27 -2.58 16 18 C -0.15 -5.90 10.66 22.59 0.24 -5.66 16 19 C -0.22 -7.18 10.81 22.01 0.24 -6.95 16 20 C 0.00 0.16 11.89 83.47 0.99 1.16 16 21 N -0.52 -21.68 5.36 -183.56 -0.98 -22.66 16 22 H 0.43 19.21 5.16 -92.71 -0.48 18.73 16 23 H 0.06 1.53 8.13 -2.39 -0.02 1.52 16 24 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 25 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.11 4.57 4.30 -2.39 -0.01 4.56 16 27 H 0.13 5.10 7.37 -2.39 -0.02 5.08 16 28 H 0.29 13.37 8.31 -92.71 -0.77 12.60 16 29 H 0.14 5.34 8.06 -2.91 -0.02 5.32 16 30 H 0.17 4.14 8.06 -2.91 -0.02 4.11 16 31 H 0.20 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -64.77 273.34 6.13 -58.64 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: 0.67 Total: 36.10 kcal Atomic # 6 Polarization: 21.35 SS G_CDS: 5.62 Total: 26.97 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -1.61 Total: -90.08 kcal Atomic # 8 Polarization: -70.62 SS G_CDS: -0.26 Total: -70.88 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 1.71 Total: 39.25 kcal Total: -64.77 6.13 -58.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120522607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.459 kcal (2) G-P(sol) polarization free energy of solvation -64.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds