Wall clock time and date at job start Mon Mar 30 2020 18:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48503 * 109.46891 * 239.99605 * 3 2 1 5 5 H 1.48494 * 109.47166 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47130 * 119.99897 * 3 2 1 7 7 C 1.37879 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00039 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00347 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47551 * 179.97438 * 9 7 2 11 11 C 1.47957 * 111.00340 * 169.99761 * 10 9 7 12 12 C 1.53930 * 86.18036 * 222.41902 * 11 10 9 13 13 O 1.42896 * 113.73799 * 138.08276 * 12 11 10 14 14 C 1.42895 * 114.00463 * 149.99487 * 13 12 11 15 15 C 1.53003 * 109.47102 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47020 * 180.02562 * 15 14 13 17 17 N 1.28604 * 124.61494 * 90.00322 * 16 15 14 18 18 C 1.31387 * 108.71396 * 179.97438 * 17 16 15 19 19 C 1.39667 * 105.89980 * 359.97438 * 18 17 16 20 20 N 1.28598 * 124.62248 * 269.97726 * 16 15 14 21 21 C 1.47957 * 111.00045 * 70.63442 * 10 9 7 22 22 H 0.96996 * 120.00062 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47034 * 59.99294 * 9 7 2 24 24 H 1.09004 * 109.46708 * 299.99654 * 9 7 2 25 25 H 1.09000 * 113.75907 * 108.09753 * 11 10 9 26 26 H 1.09001 * 113.75885 * 336.73289 * 11 10 9 27 27 H 1.09007 * 113.73140 * 269.25479 * 12 11 10 28 28 H 1.09003 * 109.47045 * 60.00033 * 14 13 12 29 29 H 1.08995 * 109.47222 * 300.00063 * 14 13 12 30 30 H 1.08994 * 109.47235 * 60.00237 * 15 14 13 31 31 H 1.09000 * 109.47325 * 299.99732 * 15 14 13 32 32 H 1.07998 * 127.04695 * 179.97438 * 18 17 16 33 33 H 1.08000 * 127.05183 * 180.02562 * 19 18 17 34 34 H 1.09003 * 113.76200 * 23.26911 * 21 10 9 35 35 H 1.09000 * 113.76005 * 251.90247 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5162 -4.9028 0.2404 12 6 2.6928 -5.2412 1.1735 13 8 2.2971 -5.8746 2.3918 14 6 3.2756 -6.7678 2.9271 15 6 2.7479 -7.3845 4.2241 16 7 3.7514 -8.2997 4.7732 17 7 4.6767 -7.9592 5.5989 18 6 5.3974 -9.0198 5.8853 19 6 4.8361 -10.0716 5.1577 20 7 3.8268 -9.5531 4.4956 21 6 2.8983 -3.7212 1.3037 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 1.4576 -5.5406 -0.6415 26 1 0.5618 -4.8001 0.7568 27 1 3.5144 -5.7555 0.6747 28 1 4.1943 -6.2187 3.1337 29 1 3.4795 -7.5584 2.2051 30 1 1.8292 -7.9334 4.0179 31 1 2.5444 -6.5936 4.9460 32 1 6.2492 -9.0683 6.5475 33 1 5.1646 -11.1003 5.1423 34 1 2.3481 -3.2730 2.1311 35 1 3.9439 -3.4150 1.2713 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225041246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:26:07 Heat of formation + Delta-G solvation = 80.038440 kcal Electronic energy + Delta-G solvation = -17680.121863 eV Core-core repulsion = 14716.604848 eV Total energy + Delta-G solvation = -2963.517015 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.49427 -40.96384 -38.27776 -35.25192 -34.80699 -33.40277 -31.28301 -30.05258 -27.31469 -26.74191 -25.06788 -23.80094 -23.44397 -22.22298 -20.87932 -18.82183 -18.51198 -17.89701 -17.47213 -17.01909 -16.83047 -16.28501 -15.86915 -15.49650 -15.21318 -15.16817 -14.38194 -13.99539 -13.74564 -13.57923 -13.32830 -12.85716 -12.66731 -12.58974 -12.54063 -12.20903 -12.14998 -11.78106 -11.53817 -11.37516 -11.23153 -10.67253 -10.60125 -10.34439 -9.67645 -8.26157 -6.37440 0.79695 1.19190 1.38558 1.42097 1.50237 1.60928 2.36694 2.61338 3.06829 3.24363 3.29284 3.45241 3.67454 3.85855 3.99356 4.11122 4.11696 4.28943 4.47918 4.53173 4.55517 4.63167 4.68698 4.74428 4.86838 4.93417 5.07508 5.08980 5.36361 5.47722 5.69402 5.72999 6.05604 6.07139 6.33500 6.76840 7.32510 7.37764 8.85600 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.043815 B = 0.003356 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.893254 B = 8341.315866 C = 8684.825493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.179 3.821 10 N -0.490 5.490 11 C -0.002 4.002 12 C 0.082 3.918 13 O -0.381 6.381 14 C 0.055 3.945 15 C 0.144 3.856 16 N -0.168 5.168 17 N -0.320 5.320 18 C -0.024 4.024 19 C -0.023 4.023 20 N -0.316 5.316 21 C -0.001 4.001 22 H 0.266 0.734 23 H 0.005 0.995 24 H -0.026 1.026 25 H 0.108 0.892 26 H 0.061 0.939 27 H 0.119 0.881 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.232 0.768 33 H 0.234 0.766 34 H 0.054 0.946 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.047 -19.539 10.456 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.079 0.921 9 C 0.052 3.948 10 N -0.215 5.215 11 C -0.131 4.131 12 C 0.024 3.976 13 O -0.298 6.298 14 C -0.023 4.023 15 C 0.024 3.976 16 N -0.069 5.069 17 N -0.160 5.160 18 C -0.207 4.207 19 C -0.206 4.206 20 N -0.157 5.157 21 C -0.130 4.130 22 H 0.075 0.925 23 H 0.023 0.977 24 H -0.008 1.008 25 H 0.126 0.874 26 H 0.079 0.921 27 H 0.136 0.864 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.249 0.751 33 H 0.250 0.750 34 H 0.073 0.927 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.089 -18.385 9.404 22.562 hybrid contribution 0.245 0.483 0.833 0.994 sum 9.334 -17.901 10.237 22.636 Atomic orbital electron populations 1.70073 1.07778 1.28186 1.51257 1.25958 0.95812 1.03390 0.94474 0.85396 0.78178 0.77634 0.79196 1.19217 1.20572 1.19142 1.21379 0.93551 0.91205 1.50943 0.92086 1.19847 0.90940 0.90026 0.94029 1.68429 1.21100 1.02209 1.29718 1.24267 0.96696 0.93106 0.98984 1.24153 0.97826 0.91379 0.84223 1.87876 1.42080 1.59829 1.40014 1.22684 0.91906 0.93059 0.94678 1.21677 0.88212 0.92120 0.95639 1.48026 1.23102 1.05047 1.30768 1.74118 1.02324 1.29793 1.09808 1.25536 1.02984 0.88007 1.04174 1.25535 0.93863 1.03673 0.97511 1.74081 1.22695 0.95082 1.23842 1.24236 1.00807 0.95852 0.92080 0.92489 0.97693 1.00812 0.87423 0.92084 0.86379 0.92499 0.91578 0.85537 0.86194 0.75134 0.74974 0.92736 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.53 -31.00 8.84 25.60 0.23 -30.77 16 8 H 0.06 3.47 7.80 -2.91 -0.02 3.45 16 9 C 0.18 9.82 4.58 85.56 0.39 10.21 16 10 N -0.49 -21.78 6.25 -916.46 -5.73 -27.51 16 11 C 0.00 -0.06 7.81 86.40 0.67 0.61 16 12 C 0.08 2.51 4.50 31.24 0.14 2.65 16 13 O -0.38 -10.72 10.36 -148.98 -1.54 -12.26 16 14 C 0.05 1.21 6.10 71.98 0.44 1.65 16 15 C 0.14 2.86 6.91 86.38 0.60 3.45 16 16 N -0.17 -3.71 3.95 -187.50 -0.74 -4.45 16 17 N -0.32 -7.06 12.05 -56.87 -0.69 -7.75 16 18 C -0.02 -0.36 12.20 85.11 1.04 0.68 16 19 C -0.02 -0.33 12.19 85.11 1.04 0.71 16 20 N -0.32 -6.70 12.05 -56.87 -0.69 -7.39 16 21 C 0.00 -0.02 7.29 86.41 0.63 0.61 16 22 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 23 H 0.00 0.30 8.14 -2.39 -0.02 0.28 16 24 H -0.03 -1.53 7.69 -2.38 -0.02 -1.54 16 25 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 26 H 0.06 2.32 7.79 -2.39 -0.02 2.30 16 27 H 0.12 3.00 7.87 -2.38 -0.02 2.98 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.23 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.23 1.29 8.06 -2.91 -0.02 1.26 16 34 H 0.05 2.34 7.78 -2.39 -0.02 2.32 16 35 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -72.14 305.04 -0.37 -72.51 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 1.07 Total: 6.40 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 5.64 Total: -9.61 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -7.56 Total: -103.82 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -1.54 Total: -12.26 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -72.14 -0.37 -72.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225041246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.545 kcal (2) G-P(sol) polarization free energy of solvation -72.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds