Wall clock time and date at job start Mon Mar 30 2020 18:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 119.99984 * 2 1 4 4 H 1.08005 * 120.00030 * 203.04470 * 3 2 1 5 5 C 1.38809 * 120.00237 * 23.04800 * 3 2 1 6 6 N 1.31620 * 119.99883 * 12.93690 * 5 3 2 7 7 Si 1.86798 * 120.00300 * 192.93446 * 5 3 2 8 8 H 1.48504 * 109.46940 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.47016 * 119.99769 * 7 5 3 10 10 H 1.48498 * 109.47499 * 240.00052 * 7 5 3 11 11 C 1.46504 * 120.00091 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47000 * 90.00050 * 11 2 1 13 13 N 1.46497 * 109.47234 * 180.02562 * 12 11 2 14 14 C 1.34776 * 120.00508 * 179.97438 * 13 12 11 15 15 O 1.21289 * 119.99858 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00520 * 180.02562 * 14 13 12 17 17 C 1.50701 * 109.47317 * 180.02562 * 16 14 13 18 18 C 1.41381 * 126.58122 * 90.00244 * 17 16 14 19 19 C 1.34504 * 106.84128 * 180.26233 * 18 17 16 20 20 O 1.34304 * 108.42176 * 359.63149 * 19 18 17 21 21 C 1.34309 * 109.47510 * 0.37557 * 20 19 18 22 22 H 1.08998 * 109.47034 * 275.12035 * 1 2 3 23 23 H 1.09003 * 109.46638 * 35.12224 * 1 2 3 24 24 H 1.09002 * 109.47369 * 155.11988 * 1 2 3 25 25 H 0.96998 * 120.00382 * 180.02562 * 6 5 3 26 26 H 1.09002 * 109.47089 * 330.00142 * 11 2 1 27 27 H 1.09002 * 109.46762 * 209.99889 * 11 2 1 28 28 H 1.09002 * 109.47124 * 60.00114 * 12 11 2 29 29 H 1.09001 * 109.47308 * 300.00334 * 12 11 2 30 30 H 0.97008 * 119.99911 * 0.02562 * 13 12 11 31 31 H 1.08994 * 109.47067 * 60.00043 * 16 14 13 32 32 H 1.09008 * 109.46860 * 300.00518 * 16 14 13 33 33 H 1.08001 * 126.57892 * 359.97438 * 18 17 16 34 34 H 1.07997 * 125.79338 * 179.77008 * 19 18 17 35 35 H 1.07997 * 125.78954 * 179.79164 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4119 2.2597 1.1460 7 14 2.3158 4.0074 0.1455 8 1 3.5693 3.8265 -0.6301 9 1 1.3714 4.8507 -0.6306 10 1 2.6242 4.6704 1.4379 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 7 3.1845 -2.9787 -1.4439 14 6 3.5209 -3.5622 -2.6113 15 8 3.2180 -3.0363 -3.6615 16 6 4.2734 -4.8679 -2.6120 17 6 4.5246 -5.3022 -4.0330 18 6 5.6488 -4.9782 -4.8268 19 6 5.4635 -5.5650 -6.0228 20 8 4.2972 -6.2303 -5.9930 21 6 3.7220 -6.0719 -4.7896 22 1 -0.3633 0.0917 1.0235 23 1 -0.3633 0.8406 -0.5913 24 1 -0.3634 -0.9323 -0.4324 25 1 -0.0152 3.0662 1.4746 26 1 1.6084 -2.0287 0.5129 27 1 3.1499 -1.1386 0.5133 28 1 3.0416 -0.9498 -1.9567 29 1 1.5001 -1.8398 -1.9572 30 1 3.4264 -3.3995 -0.6040 31 1 3.6837 -5.6272 -2.0985 32 1 5.2259 -4.7385 -2.0980 33 1 6.4921 -4.3716 -4.5312 34 1 6.1391 -5.5123 -6.8637 35 1 2.7758 -6.4917 -4.4818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663166249.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:25:56 Heat of formation + Delta-G solvation = -0.071516 kcal Electronic energy + Delta-G solvation = -17751.686122 eV Core-core repulsion = 14752.402527 eV Total energy + Delta-G solvation = -2999.283594 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.60770 -39.32588 -36.08559 -34.19750 -33.95014 -31.40798 -30.49956 -28.71428 -27.14891 -25.84162 -23.29912 -21.68233 -21.01122 -20.66342 -19.82228 -17.58253 -16.99217 -16.59166 -15.82788 -15.58824 -15.34249 -14.84602 -14.55512 -13.98686 -13.48425 -13.32460 -13.04362 -12.86357 -12.50080 -12.42359 -12.30403 -11.60022 -11.17136 -10.88980 -10.86953 -10.59307 -10.34091 -9.99168 -9.93590 -9.90138 -9.50494 -8.68331 -8.61097 -8.55687 -6.79962 -5.74698 -3.22826 1.70813 2.47685 2.87368 3.07152 3.37715 3.45051 3.47427 3.59130 4.50481 4.64753 4.69077 4.89833 5.10759 5.28698 5.37268 5.39516 5.60208 5.63538 5.81967 5.91733 5.92399 6.07362 6.25803 6.39942 6.61893 6.65975 6.76396 6.90897 7.03014 7.36046 7.70431 7.78800 7.79858 8.36623 8.50315 9.20785 9.83235 10.31273 11.30161 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.040797 B = 0.003620 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.167391 B = 7732.334146 C = 8071.075370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.259 4.259 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.726 5.726 14 C 0.506 3.494 15 O -0.536 6.536 16 C -0.072 4.072 17 C -0.160 4.160 18 C -0.198 4.198 19 C -0.047 4.047 20 O -0.179 6.179 21 C -0.029 4.029 22 H 0.033 0.967 23 H 0.042 0.958 24 H -0.001 1.001 25 H 0.252 0.748 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.396 0.604 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.146 0.854 34 H 0.200 0.800 35 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 -17.579 -7.132 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.321 5.321 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.015 3.985 12 C -0.031 4.031 13 N -0.378 5.378 14 C 0.291 3.709 15 O -0.413 6.413 16 C -0.112 4.112 17 C -0.162 4.162 18 C -0.218 4.218 19 C -0.114 4.114 20 O -0.074 6.074 21 C -0.097 4.097 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.017 0.983 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.230 0.770 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.163 0.837 34 H 0.217 0.783 35 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 7.827 -17.176 -8.041 20.516 hybrid contribution 0.538 1.017 0.421 1.225 sum 8.364 -16.159 -7.620 19.727 Atomic orbital electron populations 1.20836 0.82331 0.95590 0.99602 1.43794 1.01956 1.00354 1.85973 1.19241 0.98373 0.85533 1.35717 0.91298 1.25029 0.97829 0.98624 0.98023 1.70080 1.19402 1.27190 1.38442 0.86171 0.78652 0.84146 0.77501 1.20247 1.21525 1.21666 1.20841 0.96692 0.89133 0.91790 1.22398 0.95592 0.83161 1.01954 1.46102 1.58529 1.25187 1.07980 1.20546 0.79887 0.86404 0.84077 1.90721 1.54229 1.64935 1.31380 1.20020 1.01877 0.95629 0.93677 1.19820 0.96580 1.02732 0.97062 1.21680 1.00829 1.04835 0.94410 1.23925 0.88143 0.99154 1.00188 1.84048 1.30639 1.58931 1.33793 1.23771 0.99409 1.03557 0.82987 0.94854 0.93957 0.98277 0.93740 0.94111 0.92963 0.91701 0.92381 0.77034 0.88228 0.88070 0.83650 0.78296 0.78376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 8.98 59.84 0.54 4.53 16 2 N -0.60 -15.07 2.92 -181.12 -0.53 -15.60 16 3 C -0.26 -7.17 9.65 -15.06 -0.15 -7.32 16 4 H 0.07 1.87 7.86 -52.48 -0.41 1.46 16 5 C 0.00 0.10 5.10 -17.43 -0.09 0.01 16 6 N -0.91 -26.51 10.71 55.49 0.59 -25.92 16 7 Si 0.91 22.03 29.57 -169.99 -5.03 17.00 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 C 0.14 2.84 5.76 -4.04 -0.02 2.82 16 12 C 0.09 1.75 6.00 -4.04 -0.02 1.73 16 13 N -0.73 -10.25 5.56 -60.29 -0.33 -10.59 16 14 C 0.51 7.50 7.82 -10.99 -0.09 7.42 16 15 O -0.54 -10.61 16.03 5.55 0.09 -10.52 16 16 C -0.07 -0.73 6.22 -29.03 -0.18 -0.91 16 17 C -0.16 -1.90 4.66 -104.74 -0.49 -2.39 16 18 C -0.20 -2.26 10.87 -39.71 -0.43 -2.69 16 19 C -0.05 -0.48 12.09 29.41 0.36 -0.12 16 20 O -0.18 -2.09 10.65 5.69 0.06 -2.03 16 21 C -0.03 -0.33 12.01 29.41 0.35 0.02 16 22 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 23 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 24 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 25 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 27 H 0.05 1.00 8.04 -51.93 -0.42 0.59 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.40 4.18 8.47 -40.82 -0.35 3.84 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.83 8.14 -51.92 -0.42 0.40 16 33 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.20 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 306.13 15.07 4.61 4.61 Total: -1.00 -34.60 306.13 -5.62 -40.22 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.87 Total: -0.28 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -0.22 Total: 3.09 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.27 Total: -52.10 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.15 Total: -12.55 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.60 -5.62 -40.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663166249.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.151 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds