Wall clock time and date at job start Mon Mar 30 2020 18:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 119.99984 * 2 1 4 4 H 1.08005 * 120.00030 * 203.04470 * 3 2 1 5 5 C 1.38809 * 120.00237 * 23.04800 * 3 2 1 6 6 N 1.31620 * 119.99883 * 12.93690 * 5 3 2 7 7 Si 1.86798 * 120.00300 * 192.93446 * 5 3 2 8 8 H 1.48504 * 109.46940 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.47016 * 119.99769 * 7 5 3 10 10 H 1.48498 * 109.47499 * 240.00052 * 7 5 3 11 11 C 1.46504 * 120.00091 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47000 * 90.00050 * 11 2 1 13 13 N 1.46497 * 109.47234 * 180.02562 * 12 11 2 14 14 C 1.34776 * 120.00508 * 179.97438 * 13 12 11 15 15 O 1.21289 * 119.99858 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00520 * 180.02562 * 14 13 12 17 17 C 1.50701 * 109.47317 * 180.02562 * 16 14 13 18 18 C 1.41381 * 126.58122 * 90.00244 * 17 16 14 19 19 C 1.34504 * 106.84128 * 180.26233 * 18 17 16 20 20 O 1.34304 * 108.42176 * 359.63149 * 19 18 17 21 21 C 1.34309 * 109.47510 * 0.37557 * 20 19 18 22 22 H 1.08998 * 109.47034 * 275.12035 * 1 2 3 23 23 H 1.09003 * 109.46638 * 35.12224 * 1 2 3 24 24 H 1.09002 * 109.47369 * 155.11988 * 1 2 3 25 25 H 0.96998 * 120.00382 * 180.02562 * 6 5 3 26 26 H 1.09002 * 109.47089 * 330.00142 * 11 2 1 27 27 H 1.09002 * 109.46762 * 209.99889 * 11 2 1 28 28 H 1.09002 * 109.47124 * 60.00114 * 12 11 2 29 29 H 1.09001 * 109.47308 * 300.00334 * 12 11 2 30 30 H 0.97008 * 119.99911 * 0.02562 * 13 12 11 31 31 H 1.08994 * 109.47067 * 60.00043 * 16 14 13 32 32 H 1.09008 * 109.46860 * 300.00518 * 16 14 13 33 33 H 1.08001 * 126.57892 * 359.97438 * 18 17 16 34 34 H 1.07997 * 125.79338 * 179.77008 * 19 18 17 35 35 H 1.07997 * 125.78954 * 179.79164 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4119 2.2597 1.1460 7 14 2.3158 4.0074 0.1455 8 1 3.5693 3.8265 -0.6301 9 1 1.3714 4.8507 -0.6306 10 1 2.6242 4.6704 1.4379 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 7 3.1845 -2.9787 -1.4439 14 6 3.5209 -3.5622 -2.6113 15 8 3.2180 -3.0363 -3.6615 16 6 4.2734 -4.8679 -2.6120 17 6 4.5246 -5.3022 -4.0330 18 6 5.6488 -4.9782 -4.8268 19 6 5.4635 -5.5650 -6.0228 20 8 4.2972 -6.2303 -5.9930 21 6 3.7220 -6.0719 -4.7896 22 1 -0.3633 0.0917 1.0235 23 1 -0.3633 0.8406 -0.5913 24 1 -0.3634 -0.9323 -0.4324 25 1 -0.0152 3.0662 1.4746 26 1 1.6084 -2.0287 0.5129 27 1 3.1499 -1.1386 0.5133 28 1 3.0416 -0.9498 -1.9567 29 1 1.5001 -1.8398 -1.9572 30 1 3.4264 -3.3995 -0.6040 31 1 3.6837 -5.6272 -2.0985 32 1 5.2259 -4.7385 -2.0980 33 1 6.4921 -4.3716 -4.5312 34 1 6.1391 -5.5123 -6.8637 35 1 2.7758 -6.4917 -4.4818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663166249.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:25:56 Heat of formation + Delta-G solvation = -24.496380 kcal Electronic energy + Delta-G solvation = -17752.745263 eV Core-core repulsion = 14752.402527 eV Total energy + Delta-G solvation = -3000.342736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.41005 -40.57033 -37.86276 -35.68712 -34.89046 -33.30271 -31.44354 -30.03797 -28.34661 -27.88389 -25.00095 -22.48460 -22.40824 -22.07265 -20.87065 -18.81489 -18.41814 -17.95041 -17.09715 -16.68490 -16.58914 -16.49119 -15.62095 -15.46002 -15.15316 -14.75150 -14.49337 -14.14277 -13.79340 -13.63964 -13.32280 -13.06081 -12.80963 -12.66563 -12.50835 -12.38798 -12.15501 -11.97516 -11.78134 -11.09073 -10.69413 -10.50125 -10.02766 -9.40102 -8.84221 -7.86150 -5.36504 0.90738 1.44555 1.46969 1.56869 1.61658 1.72330 2.31745 2.39353 2.56239 3.28035 3.76269 3.83140 3.98626 4.10826 4.19813 4.24230 4.36305 4.59396 4.67008 4.67406 4.80223 4.83454 5.05805 5.13951 5.14516 5.31628 5.33735 5.53309 5.61401 5.62049 5.68545 6.22758 6.30096 6.67778 7.11786 7.37294 7.82529 8.25059 9.17098 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.040797 B = 0.003620 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.167391 B = 7732.334146 C = 8071.075370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.618 5.618 3 C -0.268 4.268 4 H 0.069 0.931 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.968 3.032 8 H -0.269 1.269 9 H -0.292 1.292 10 H -0.287 1.287 11 C 0.147 3.853 12 C 0.116 3.884 13 N -0.712 5.712 14 C 0.504 3.496 15 O -0.591 6.591 16 C -0.059 4.059 17 C -0.183 4.183 18 C -0.224 4.224 19 C -0.048 4.048 20 O -0.192 6.192 21 C -0.041 4.041 22 H 0.012 0.988 23 H 0.012 0.988 24 H 0.031 0.969 25 H 0.249 0.751 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.040 0.960 30 H 0.418 0.582 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.154 0.846 34 H 0.232 0.768 35 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.518 -19.066 -7.022 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.341 5.341 3 C -0.398 4.398 4 H 0.087 0.913 5 C -0.246 4.246 6 N -0.582 5.582 7 Si 0.796 3.204 8 H -0.194 1.194 9 H -0.219 1.219 10 H -0.214 1.214 11 C 0.020 3.980 12 C -0.011 4.011 13 N -0.366 5.366 14 C 0.292 3.708 15 O -0.471 6.471 16 C -0.099 4.099 17 C -0.185 4.185 18 C -0.243 4.243 19 C -0.115 4.115 20 O -0.088 6.088 21 C -0.108 4.108 22 H 0.031 0.969 23 H 0.031 0.969 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.255 0.745 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.171 0.829 34 H 0.249 0.751 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 9.075 -18.720 -7.903 22.254 hybrid contribution 0.191 1.400 0.343 1.454 sum 9.267 -17.320 -7.560 21.048 Atomic orbital electron populations 1.20593 0.82594 0.95945 0.97984 1.44042 1.02263 1.01642 1.86162 1.19533 0.98497 0.86885 1.34893 0.91307 1.25778 0.98570 1.01857 0.98354 1.70222 1.20686 1.27674 1.39624 0.85203 0.77942 0.80032 0.77249 1.19351 1.21878 1.21384 1.20964 0.96883 0.87560 0.92571 1.21803 0.94683 0.84401 1.00245 1.45869 1.57771 1.23639 1.09278 1.21404 0.78993 0.87400 0.82985 1.90703 1.56409 1.66659 1.33326 1.20055 1.02848 0.93361 0.93604 1.20165 0.97007 1.03256 0.98094 1.22003 1.01475 1.05696 0.95172 1.24609 0.87875 0.98052 1.00951 1.84050 1.31228 1.59299 1.34214 1.24330 1.00149 1.03564 0.82744 0.96942 0.96928 0.95017 0.94135 0.91468 0.92208 0.94884 0.94127 0.74507 0.84664 0.85526 0.82863 0.75143 0.76099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.64 8.98 127.77 1.15 9.78 16 2 N -0.62 -30.91 2.92 -726.93 -2.12 -33.03 16 3 C -0.27 -14.83 9.65 84.03 0.81 -14.02 16 4 H 0.07 3.73 7.86 -2.91 -0.02 3.70 16 5 C -0.05 -2.84 5.10 84.86 0.43 -2.40 16 6 N -0.94 -55.45 10.71 21.65 0.23 -55.22 16 7 Si 0.97 45.53 29.57 68.60 2.03 47.56 16 8 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 9 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 C 0.15 5.56 5.76 86.38 0.50 6.06 16 12 C 0.12 4.17 6.00 86.38 0.52 4.69 16 13 N -0.71 -18.52 5.56 -463.06 -2.57 -21.09 16 14 C 0.50 14.04 7.82 87.66 0.69 14.73 16 15 O -0.59 -23.19 16.03 -3.06 -0.05 -23.24 16 16 C -0.06 -1.03 6.22 29.10 0.18 -0.84 16 17 C -0.18 -4.00 4.66 -19.94 -0.09 -4.10 16 18 C -0.22 -4.82 10.87 22.19 0.24 -4.58 16 19 C -0.05 -0.92 12.09 66.96 0.81 -0.11 16 20 O -0.19 -4.25 10.65 -2.55 -0.03 -4.28 16 21 C -0.04 -0.84 12.01 66.97 0.80 -0.03 16 22 H 0.01 0.66 7.34 -2.39 -0.02 0.64 16 23 H 0.01 0.66 7.34 -2.39 -0.02 0.64 16 24 H 0.03 1.33 8.03 -2.39 -0.02 1.31 16 25 H 0.25 14.30 8.31 -92.71 -0.77 13.52 16 26 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 27 H 0.06 2.18 8.04 -2.39 -0.02 2.16 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.42 7.35 8.47 -92.70 -0.79 6.57 16 31 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 34 H 0.23 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.22 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -76.03 306.13 3.82 -72.21 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.30 Total: 7.91 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 6.04 Total: 9.18 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -4.46 Total: -109.34 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.08 Total: -27.52 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -76.03 3.82 -72.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663166249.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.712 kcal (2) G-P(sol) polarization free energy of solvation -76.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds